Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:29:06 (3893174): wrapper (7.7.26015): starting
12:29:06 (3893174): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 12:29:06] Arguments: --nthreads 3
[2026-01-09 12:29:06] Threads: 3
[2026-01-09 12:29:06] Checking for CVMFS
[2026-01-09 12:29:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 12:29:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 12:29:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 12:29:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 12:29:06] 2.9.2.0 3347489 2197 82120 154942 0 57 15396862 36864001 0 130560 0 1380091 99.988 85093 5053 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 12:29:06] CVMFS is ok
[2026-01-09 12:29:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 12:29:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 12:29:06] Further information can be found at the LHC@home message board.
[2026-01-09 12:29:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 12:29:06] Checking for apptainer binary...
[2026-01-09 12:29:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 12:29:06] Running /usr/bin/apptainer --version
[2026-01-09 12:29:06] apptainer version 1.4.1-1.1
[2026-01-09 12:29:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 12:29:06] thA325a
[2026-01-09 12:29:06] apptainer works
[2026-01-09 12:29:06] Set ATHENA_PROC_NUMBER=3
[2026-01-09 12:29:06] Set ATHENA_CORE_NUMBER=3
[2026-01-09 12:29:06] Starting ATLAS job with PandaID=6963152320
[2026-01-09 12:29:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 14:25:27]  *** The last 200 lines of the pilot log: ***
[2026-01-09 14:25:27] 2026-01-09 13:24:55,592 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 14:25:27] 2026-01-09 13:24:55,592 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 14:25:27] 2026-01-09 13:24:55,592 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 14:25:27] 2026-01-09 13:24:55,592 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 14:25:27] 2026-01-09 13:24:55,592 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 14:25:27] 2026-01-09 13:24:55,592 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 14:25:27] 2026-01-09 13:24:55,592 | INFO     | job 6963152320 has completed (purged errors)
[2026-01-09 14:25:27] 2026-01-09 13:24:55,592 | INFO     | overall cleanup function is called
[2026-01-09 14:25:27] 2026-01-09 13:24:56,599 | INFO     | --- collectZombieJob: --- 10, [3903365]
[2026-01-09 14:25:27] 2026-01-09 13:24:56,599 | INFO     | zombie collector waiting for pid 3903365
[2026-01-09 14:25:27] 2026-01-09 13:24:56,599 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 14:25:27] 2026-01-09 13:24:56,599 | INFO     | collected zombie processes
[2026-01-09 14:25:27] 2026-01-09 13:24:56,599 | INFO     | will attempt to kill all subprocesses of pid=3903365
[2026-01-09 14:25:27] 2026-01-09 13:24:56,648 | INFO     | process IDs to be killed: [3903365] (in reverse order)
[2026-01-09 14:25:27] 2026-01-09 13:24:56,674 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 14:25:27] 2026-01-09 13:24:56,675 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 14:25:27] 2026-01-09 13:24:56,676 | INFO     | did not find any defunct processes belonging to 3903365
[2026-01-09 14:25:27] 2026-01-09 13:24:56,677 | INFO     | did not find any defunct processes belonging to 3903365
[2026-01-09 14:25:27] 2026-01-09 13:24:56,677 | INFO     | ready for new job
[2026-01-09 14:25:27] 2026-01-09 13:24:56,677 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 14:25:27] 2026-01-09 13:24:56,678 | INFO     | ***************************************
[2026-01-09 14:25:27] 2026-01-09 13:24:56,678 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 14:25:27] 2026-01-09 13:24:56,678 | INFO     | ***************************************
[2026-01-09 14:25:27] 2026-01-09 13:24:56,678 | INFO     | 
[2026-01-09 14:25:27] 2026-01-09 13:24:56,679 | INFO     | architecture information:
[2026-01-09 14:25:27] 2026-01-09 13:24:56,679 | INFO     | executing command: cat /etc/os-release
[2026-01-09 14:25:27] 2026-01-09 13:24:56,688 | INFO     | cat /etc/os-release:
[2026-01-09 14:25:27] NAME="CentOS Linux"
[2026-01-09 14:25:27] VERSION="7 (Core)"
[2026-01-09 14:25:27] ID="centos"
[2026-01-09 14:25:27] ID_LIKE="rhel fedora"
[2026-01-09 14:25:27] VERSION_ID="7"
[2026-01-09 14:25:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 14:25:27] ANSI_COLOR="0;31"
[2026-01-09 14:25:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 14:25:27] HOME_URL="https://www.centos.org/"
[2026-01-09 14:25:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 14:25:27] 
[2026-01-09 14:25:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 14:25:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 14:25:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 14:25:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 14:25:27] 
[2026-01-09 14:25:27] 2026-01-09 13:24:56,689 | INFO     | ***************************************
[2026-01-09 14:25:27] 2026-01-09 13:24:57,192 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 14:25:27] 2026-01-09 13:24:57,205 | INFO     | sufficient remaining disk space (244358053888 B)
[2026-01-09 14:25:27] 2026-01-09 13:24:57,205 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 14:25:27] 2026-01-09 13:24:57,206 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 14:25:27] 2026-01-09 13:24:57,206 | INFO     | update_server=False
[2026-01-09 14:25:27] 2026-01-09 13:24:57,206 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 14:25:27] 2026-01-09 13:24:57,206 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 14:25:27] 2026-01-09 13:24:57,206 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:25:27] 2026-01-09 13:24:57,206 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:25:27] 2026-01-09 13:24:57,206 | INFO     | aborting loop
[2026-01-09 14:25:27] 2026-01-09 13:24:57,891 | INFO     | all data control threads have been joined
[2026-01-09 14:25:27] 2026-01-09 13:24:57,907 | INFO     | all job control threads have been joined
[2026-01-09 14:25:27] 2026-01-09 13:24:58,211 | INFO     | [job] retrieve thread has finished
[2026-01-09 14:25:27] 2026-01-09 13:24:58,212 | INFO     | [job] queue monitor thread has finished
[2026-01-09 14:25:27] 2026-01-09 13:24:58,212 | INFO     | [job] job monitor thread has finished
[2026-01-09 14:25:27] 2026-01-09 13:24:58,563 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 14:25:27] 2026-01-09 13:24:58,595 | INFO     | all payload control threads have been joined
[2026-01-09 14:25:27] 2026-01-09 13:24:58,714 | INFO     | [payload] failed_post thread has finished
[2026-01-09 14:25:27] 2026-01-09 13:24:58,897 | INFO     | [data] control thread has finished
[2026-01-09 14:25:27] 2026-01-09 13:24:58,913 | INFO     | [job] control thread has finished
[2026-01-09 14:25:27] 2026-01-09 13:24:59,021 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 14:25:27] 2026-01-09 13:24:59,064 | INFO     | [data] copytool_in thread has finished
[2026-01-09 14:25:27] 2026-01-09 13:24:59,212 | INFO     | [data] copytool_out thread has finished
[2026-01-09 14:25:27] 2026-01-09 13:24:59,294 | INFO     | [payload] validate_post thread has finished
[2026-01-09 14:25:27] 2026-01-09 13:24:59,556 | INFO     | [job] validate thread has finished
[2026-01-09 14:25:27] 2026-01-09 13:24:59,601 | INFO     | [payload] control thread has finished
[2026-01-09 14:25:27] 2026-01-09 13:24:59,664 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 14:25:27] 2026-01-09 13:24:59,667 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 14:25:27] 2026-01-09 13:25:03,028 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 14:25:27] 2026-01-09 13:25:08,227 | INFO     | job.realtimelogging is not enabled
[2026-01-09 14:25:27] 2026-01-09 13:25:09,233 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 14:25:27] 2026-01-09 13:25:19,357 | INFO     | [monitor] cgroup control has ended
[2026-01-09 14:25:27] 2026-01-09 13:25:20,948 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140492030936896)>', '<ExcThread(monitor, started 140491750344448)>']
[2026-01-09 14:25:27] 2026-01-09 13:25:25,974 | INFO     | all workflow threads have been joined
[2026-01-09 14:25:27] 2026-01-09 13:25:25,974 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 14:25:27] 2026-01-09 13:25:25,974 | INFO     | traces error code: 0
[2026-01-09 14:25:27] 2026-01-09 13:25:25,974 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 14:25:27] 2026-01-09 13:25:27,103 | INFO     | PID=3896901 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 14:25:27] 2026-01-09 13:25:27,103 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 14:25:27] 2026-01-09 13:25:27,103 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 14:25:27] 2026-01-09 13:25:27,103 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 14:25:27] 2026-01-09 13:25:27,103 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 14:25:27] 2026-01-09 13:25:27,103 | INFO     | [monitor] control thread has ended
[2026-01-09 14:25:27] 2026-01-09 13:25:27,155 [wrapper] ==== pilot stdout END ====
[2026-01-09 14:25:27] 2026-01-09 13:25:27,158 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 14:25:27] 2026-01-09 13:25:27,160 [wrapper] pilotpid: 3896901
[2026-01-09 14:25:27] 2026-01-09 13:25:27,162 [wrapper] Pilot exit status: 0
[2026-01-09 14:25:27] 2026-01-09 13:25:27,169 [wrapper] pandaids: 6963152320
[2026-01-09 14:25:27] 2026-01-09 13:25:27,186 [wrapper] cleanup supervisor_pilot 3919947 3896902
[2026-01-09 14:25:27] 2026-01-09 13:25:27,189 [wrapper] Test setup, not cleaning
[2026-01-09 14:25:27] 2026-01-09 13:25:27,191 [wrapper] apfmon messages muted
[2026-01-09 14:25:27] 2026-01-09 13:25:27,193 [wrapper] ==== wrapper stdout END ====
[2026-01-09 14:25:27] 2026-01-09 13:25:27,195 [wrapper] ==== wrapper stderr END ====
[2026-01-09 14:25:27]  *** Error codes and diagnostics ***
[2026-01-09 14:25:27]     "exeErrorCode": 0,
[2026-01-09 14:25:27]     "exeErrorDiag": "",
[2026-01-09 14:25:27]     "pilotErrorCode": 0,
[2026-01-09 14:25:27]     "pilotErrorDiag": "",
[2026-01-09 14:25:27]  *** Listing of results directory ***
[2026-01-09 14:25:27] total 449660
[2026-01-09 14:25:27] -rw-r--r-- 1 boinc boinc    579449 Jan  8 17:02 pilot3.tar.gz
[2026-01-09 14:25:27] -rwx------ 1 boinc boinc     36322 Jan  8 17:04 runpilot2-wrapper.sh
[2026-01-09 14:25:27] -rw-r--r-- 1 boinc boinc      5112 Jan  8 17:04 queuedata.json
[2026-01-09 14:25:27] -rw-r--r-- 1 boinc boinc       100 Jan  9 12:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 14:25:27] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 12:29 run_atlas
[2026-01-09 14:25:27] -rw-r--r-- 1 boinc boinc       105 Jan  9 12:29 job.xml
[2026-01-09 14:25:27] -rw-r--r-- 2 boinc boinc 227267666 Jan  9 12:29 EVNT.47898824._001140.pool.root.1
[2026-01-09 14:25:27] -rw-r--r-- 2 boinc boinc    592396 Jan  9 12:29 input.tar.gz
[2026-01-09 14:25:27] -rw-r--r-- 2 boinc boinc     15847 Jan  9 12:29 start_atlas.sh
[2026-01-09 14:25:27] drwxrwx--x 2 boinc boinc      4096 Jan  9 12:29 shared
[2026-01-09 14:25:27] -rw-r--r-- 1 boinc boinc         0 Jan  9 12:29 boinc_setup_complete
[2026-01-09 14:25:27] -rw-r--r-- 1 boinc boinc      6440 Jan  9 12:29 init_data.xml
[2026-01-09 14:25:27] -rw-r--r-- 1 boinc boinc         0 Jan  9 12:29 boinc_lockfile
[2026-01-09 14:25:27] -rw-r--r-- 1 boinc boinc      2519 Jan  9 12:29 pandaJob.out
[2026-01-09 14:25:27] -rw------- 1 boinc boinc    989377 Jan  9 12:29 agis_schedconf.cvmfs.json
[2026-01-09 14:25:27] -rw------- 1 boinc boinc   1516240 Jan  9 12:29 agis_ddmendpoints.agis.ALL.json
[2026-01-09 14:25:27] drwx------ 5 boinc boinc      4096 Jan  9 12:29 pilot3
[2026-01-09 14:25:27] -rw------- 1 boinc boinc 226697992 Jan  9 14:24 HITS.47898826._029121.pool.root.1
[2026-01-09 14:25:27] -rw-r--r-- 1 boinc boinc       529 Jan  9 14:24 boinc_task_state.xml
[2026-01-09 14:25:27] -rw------- 1 boinc boinc      1032 Jan  9 14:24 memory_monitor_summary.json
[2026-01-09 14:25:27] -rw------- 1 boinc boinc    296392 Jan  9 14:24 log.47898826._029121.job.log.tgz.1
[2026-01-09 14:25:27] -rw------- 1 boinc boinc        95 Jan  9 14:24 pilot_heartbeat.json
[2026-01-09 14:25:27] -rw------- 1 boinc boinc      7768 Jan  9 14:24 heartbeat.json
[2026-01-09 14:25:27] -rw-r--r-- 1 boinc boinc      8192 Jan  9 14:25 boinc_mmap_file
[2026-01-09 14:25:27] -rw-r--r-- 1 boinc boinc        27 Jan  9 14:25 wrapper_checkpoint.txt
[2026-01-09 14:25:27] -rw------- 1 boinc boinc       747 Jan  9 14:25 pilotlog.txt
[2026-01-09 14:25:27] -rw------- 1 boinc boinc    998762 Jan  9 14:25 log.47898826._029121.job.log.1
[2026-01-09 14:25:27] -rw------- 1 boinc boinc       357 Jan  9 14:25 output.list
[2026-01-09 14:25:27] -rw-r--r-- 1 boinc boinc       620 Jan  9 14:25 runtime_log
[2026-01-09 14:25:27] -rw------- 1 boinc boinc   1310720 Jan  9 14:25 result.tar.gz
[2026-01-09 14:25:27] -rw-r--r-- 1 boinc boinc      8902 Jan  9 14:25 runtime_log.err
[2026-01-09 14:25:27] -rw------- 1 boinc boinc       660 Jan  9 14:25 eMvKDmgf7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPykKDmIWCYDm.diag
[2026-01-09 14:25:27] -rw-r--r-- 1 boinc boinc     11512 Jan  9 14:25 stderr.txt
[2026-01-09 14:25:27] HITS file was successfully produced:
[2026-01-09 14:25:27] -rw------- 1 boinc boinc 226697992 Jan  9 14:24 shared/HITS.pool.root.1
[2026-01-09 14:25:27]  *** Contents of shared directory: ***
[2026-01-09 14:25:27] total 445216
[2026-01-09 14:25:27] -rw-r--r-- 2 boinc boinc 227267666 Jan  9 12:29 ATLAS.root_0
[2026-01-09 14:25:27] -rw-r--r-- 2 boinc boinc    592396 Jan  9 12:29 input.tar.gz
[2026-01-09 14:25:27] -rw-r--r-- 2 boinc boinc     15847 Jan  9 12:29 start_atlas.sh
[2026-01-09 14:25:27] -rw------- 1 boinc boinc 226697992 Jan  9 14:24 HITS.pool.root.1
[2026-01-09 14:25:27] -rw------- 1 boinc boinc   1310720 Jan  9 14:25 result.tar.gz
14:25:28 (3893174): run_atlas exited; CPU time 20145.577431
14:25:28 (3893174): called boinc_finish(0)

</stderr_txt>
]]>

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