Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:31:07 (8939): wrapper (7.7.26015): starting
16:31:07 (8939): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 16:31:07] Arguments: --nthreads 8
[2026-01-08 16:31:07] Threads: 8
[2026-01-08 16:31:07] Checking for CVMFS
[2026-01-08 16:31:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 16:31:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 16:31:08] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 16:31:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 16:31:08] 2.11.2.0 1632 28609 97568 154920 4 188 14403745 18432000 1273 130560 0 5166262 99.982 896377 44678 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 16:31:08] CVMFS is ok
[2026-01-08 16:31:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 16:31:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 16:31:08] Further information can be found at the LHC@home message board.
[2026-01-08 16:31:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 16:31:08] Checking for apptainer binary...
[2026-01-08 16:31:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 16:31:08] Running /usr/bin/apptainer --version
[2026-01-08 16:31:08] apptainer version 1.3.2-1.el7
[2026-01-08 16:31:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 16:31:09] c-206-1.aglt2.org
[2026-01-08 16:31:09] apptainer works
[2026-01-08 16:31:09] Set ATHENA_PROC_NUMBER=8
[2026-01-08 16:31:09] Set ATHENA_CORE_NUMBER=8
[2026-01-08 16:31:09] Starting ATLAS job with PandaID=6963152256
[2026-01-08 16:31:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:30:47 (21172): wrapper (7.7.26015): starting
19:30:47 (21172): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 19:30:47] Arguments: --nthreads 8
[2026-01-08 19:30:47] Threads: 8
[2026-01-08 19:30:47] This job has been restarted, cleaning up previous attempt
[2026-01-08 19:30:47] Checking for CVMFS
[2026-01-08 19:30:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 19:30:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 19:30:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 19:30:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 19:30:48] 2.11.2.0 1632 28788 96484 154925 0 11 14429858 18432001 1 130560 0 5378256 99.983 903177 44568 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 19:30:48] CVMFS is ok
[2026-01-08 19:30:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 19:30:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 19:30:48] Further information can be found at the LHC@home message board.
[2026-01-08 19:30:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 19:30:48] Checking for apptainer binary...
[2026-01-08 19:30:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 19:30:48] Running /usr/bin/apptainer --version
[2026-01-08 19:30:48] apptainer version 1.3.2-1.el7
[2026-01-08 19:30:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 19:30:49] c-206-1.aglt2.org
[2026-01-08 19:30:49] apptainer works
[2026-01-08 19:30:49] Set ATHENA_PROC_NUMBER=8
[2026-01-08 19:30:49] Set ATHENA_CORE_NUMBER=8
[2026-01-08 19:30:49] Starting ATLAS job with PandaID=6963152256
[2026-01-08 19:30:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 23:53:34]  *** The last 200 lines of the pilot log: ***
[2026-01-08 23:53:34] 2026-01-09 04:52:42,586 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-08 23:53:34] 2026-01-09 04:52:42,589 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2095.2083333333335
[2026-01-08 23:53:34] 2026-01-09 04:52:42,592 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963152256/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 23:53:34] 2026-01-09 04:52:42,592 | INFO     | extracted standard info from prmon json
[2026-01-08 23:53:34] 2026-01-09 04:52:42,592 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 23:53:34] 2026-01-09 04:52:42,593 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 23:53:34] 2026-01-09 04:52:42,593 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 23:53:34] 2026-01-09 04:52:42,593 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 23:53:34] 2026-01-09 04:52:42,597 | INFO     | fitting pss+swap vs Time
[2026-01-08 23:53:34] 2026-01-09 04:52:42,597 | INFO     | sum of square deviations: 5263458688.0
[2026-01-08 23:53:34] 2026-01-09 04:52:42,599 | INFO     | sum of deviations: 27584808902.0
[2026-01-08 23:53:34] 2026-01-09 04:52:42,599 | INFO     | mean x: 1767926497.0
[2026-01-08 23:53:34] 2026-01-09 04:52:42,599 | INFO     | mean y: 2486794.653696498
[2026-01-08 23:53:34] 2026-01-09 04:52:42,599 | INFO     | intersect: -9262887451.31726
[2026-01-08 23:53:34] 2026-01-09 04:52:42,599 | INFO     | chi2: 1.307695501116138
[2026-01-08 23:53:34] 2026-01-09 04:52:42,600 | INFO     | sum of square deviations: 4962187923.0
[2026-01-08 23:53:34] 2026-01-09 04:52:42,601 | INFO     | sum of deviations: 26922627549.999996
[2026-01-08 23:53:34] 2026-01-09 04:52:42,601 | INFO     | mean x: 1767926344.5
[2026-01-08 23:53:34] 2026-01-09 04:52:42,601 | INFO     | mean y: 2486459.476190476
[2026-01-08 23:53:34] 2026-01-09 04:52:42,601 | INFO     | intersect: -9589496602.711132
[2026-01-08 23:53:34] 2026-01-09 04:52:42,602 | INFO     | chi2: 1.3081739022072838
[2026-01-08 23:53:34] 2026-01-09 04:52:42,602 | INFO     | current chi2=1.3081739022072838 (change=-0.03658352351426672 %)
[2026-01-08 23:53:34] 2026-01-09 04:52:42,602 | INFO     | right removable region: 251
[2026-01-08 23:53:34] 2026-01-09 04:52:42,602 | INFO     | sum of square deviations: 4962187923.0
[2026-01-08 23:53:34] 2026-01-09 04:52:42,604 | INFO     | sum of deviations: -8854446704.0
[2026-01-08 23:53:34] 2026-01-09 04:52:42,604 | INFO     | mean x: 1767926649.5
[2026-01-08 23:53:34] 2026-01-09 04:52:42,604 | INFO     | mean y: 2505084.4444444445
[2026-01-08 23:53:34] 2026-01-09 04:52:42,604 | INFO     | intersect: 3157164387.4550934
[2026-01-08 23:53:34] 2026-01-09 04:52:42,604 | INFO     | chi2: 0.03777844187805158
[2026-01-08 23:53:34] 2026-01-09 04:52:42,604 | INFO     | current chi2=0.03777844187805158 (change=97.11106738183261 %)
[2026-01-08 23:53:34] 2026-01-09 04:52:42,605 | INFO     | sum of square deviations: 4672638308.0
[2026-01-08 23:53:34] 2026-01-09 04:52:42,606 | INFO     | sum of deviations: -11382652826.0
[2026-01-08 23:53:34] 2026-01-09 04:52:42,606 | INFO     | mean x: 1767926802.0
[2026-01-08 23:53:34] 2026-01-09 04:52:42,606 | INFO     | mean y: 2506395.902834008
[2026-01-08 23:53:34] 2026-01-09 04:52:42,606 | INFO     | intersect: 4309216156.530521
[2026-01-08 23:53:34] 2026-01-09 04:52:42,607 | INFO     | chi2: 0.02191995230395033
[2026-01-08 23:53:34] 2026-01-09 04:52:42,607 | INFO     | current chi2=0.02191995230395033 (change=41.97761682520494 %)
[2026-01-08 23:53:34] 2026-01-09 04:52:42,607 | INFO     | sum of square deviations: 4394577280.5
[2026-01-08 23:53:34] 2026-01-09 04:52:42,609 | INFO     | sum of deviations: -10701842958.499996
[2026-01-08 23:53:34] 2026-01-09 04:52:42,609 | INFO     | mean x: 1767926954.5
[2026-01-08 23:53:34] 2026-01-09 04:52:42,609 | INFO     | mean y: 2506021.9132231404
[2026-01-08 23:53:34] 2026-01-09 04:52:42,609 | INFO     | intersect: 4307829474.3217125
[2026-01-08 23:53:34] 2026-01-09 04:52:42,609 | INFO     | chi2: 0.02191456196616918
[2026-01-08 23:53:34] 2026-01-09 04:52:42,609 | INFO     | current chi2=0.02191456196616918 (change=0.02459101053874007 %)
[2026-01-08 23:53:34] 2026-01-09 04:52:42,609 | INFO     | left removable region: 30
[2026-01-08 23:53:34] 2026-01-09 04:52:42,610 | INFO     | sum of square deviations: 3346927870.0
[2026-01-08 23:53:34] 2026-01-09 04:52:42,611 | INFO     | sum of deviations: -4897980604.000001
[2026-01-08 23:53:34] 2026-01-09 04:52:42,611 | INFO     | mean x: 1767927229.0
[2026-01-08 23:53:34] 2026-01-09 04:52:42,611 | INFO     | mean y: 2502453.484162896
[2026-01-08 23:53:34] 2026-01-09 04:52:42,611 | INFO     | intersect: 2589732777.31109
[2026-01-08 23:53:34] 2026-01-09 04:52:42,611 | INFO     | chi2: 0.01711753556553771
[2026-01-08 23:53:34] 2026-01-09 04:52:42,612 | INFO     | current memory leak: -1.46 B/s (using 221 data points, chi2=0.02)
[2026-01-08 23:53:34] 2026-01-09 04:52:42,612 | INFO     | could have reported an average CPU frequency of 2385 MHz (12 samples)
[2026-01-08 23:53:34] 2026-01-09 04:52:42,612 | INFO     | ..............................
[2026-01-08 23:53:34] 2026-01-09 04:52:42,612 | INFO     | . Timing measurements:
[2026-01-08 23:53:34] 2026-01-09 04:52:42,612 | INFO     | . get job = 0 s
[2026-01-08 23:53:34] 2026-01-09 04:52:42,612 | INFO     | . initial setup = 1 s
[2026-01-08 23:53:34] 2026-01-09 04:52:42,613 | INFO     | . payload setup = 6 s
[2026-01-08 23:53:34] 2026-01-09 04:52:42,613 | INFO     | . stage-in = 0 s
[2026-01-08 23:53:34] 2026-01-09 04:52:42,613 | INFO     | . payload execution = 15665 s
[2026-01-08 23:53:34] 2026-01-09 04:52:42,613 | INFO     | . stage-out = 1 s
[2026-01-08 23:53:34] 2026-01-09 04:52:42,613 | INFO     | . log creation = 0 s
[2026-01-08 23:53:34] 2026-01-09 04:52:42,613 | INFO     | ..............................
[2026-01-08 23:53:34] 2026-01-09 04:52:42,905 | INFO     | 
[2026-01-08 23:53:34] 2026-01-09 04:52:42,905 | INFO     | job summary report
[2026-01-08 23:53:34] 2026-01-09 04:52:42,905 | INFO     | --------------------------------------------------
[2026-01-08 23:53:34] 2026-01-09 04:52:42,905 | INFO     | PanDA job id: 6963152256
[2026-01-08 23:53:34] 2026-01-09 04:52:42,905 | INFO     | task id: 47898826
[2026-01-08 23:53:34] 2026-01-09 04:52:42,905 | INFO     | errors: (none)
[2026-01-08 23:53:34] 2026-01-09 04:52:42,905 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 23:53:34] 2026-01-09 04:52:42,906 | INFO     | pilot state: finished 
[2026-01-08 23:53:34] 2026-01-09 04:52:42,906 | INFO     | transexitcode: 0
[2026-01-08 23:53:34] 2026-01-09 04:52:42,906 | INFO     | exeerrorcode: 0
[2026-01-08 23:53:34] 2026-01-09 04:52:42,906 | INFO     | exeerrordiag: 
[2026-01-08 23:53:34] 2026-01-09 04:52:42,906 | INFO     | exitcode: 0
[2026-01-08 23:53:34] 2026-01-09 04:52:42,906 | INFO     | exitmsg: OK
[2026-01-08 23:53:34] 2026-01-09 04:52:42,906 | INFO     | cpuconsumptiontime: 120637 s
[2026-01-08 23:53:34] 2026-01-09 04:52:42,906 | INFO     | nevents: 400
[2026-01-08 23:53:34] 2026-01-09 04:52:42,906 | INFO     | neventsw: 0
[2026-01-08 23:53:34] 2026-01-09 04:52:42,906 | INFO     | pid: 19276
[2026-01-08 23:53:34] 2026-01-09 04:52:42,907 | INFO     | pgrp: 19276
[2026-01-08 23:53:34] 2026-01-09 04:52:42,907 | INFO     | corecount: 8
[2026-01-08 23:53:34] 2026-01-09 04:52:42,907 | INFO     | event service: False
[2026-01-08 23:53:34] 2026-01-09 04:52:42,907 | INFO     | sizes: {0: 2283799, 1: 2283998, 5: 2284260, 11: 2284316, 15676: 2315584, 15678: 2324582, 15681: 2324766, 15685: 2324960}
[2026-01-08 23:53:34] 2026-01-09 04:52:42,907 | INFO     | --------------------------------------------------
[2026-01-08 23:53:34] 2026-01-09 04:52:42,907 | INFO     | 
[2026-01-08 23:53:34] 2026-01-09 04:52:42,907 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-08 23:53:34] 2026-01-09 04:52:42,915 | INFO     | time since job start (15700s) is within the limit (349056.0s)
[2026-01-08 23:53:34] 2026-01-09 04:52:42,922 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,922 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,922 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,922 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,922 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,922 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,923 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,923 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,923 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,923 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,923 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,923 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,923 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,923 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,923 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,924 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,924 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,924 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 23:53:34] 2026-01-09 04:52:42,924 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,924 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 23:53:34] 2026-01-09 04:52:42,924 | INFO     | job 6963152256 has completed (purged errors)
[2026-01-08 23:53:34] 2026-01-09 04:52:42,924 | INFO     | overall cleanup function is called
[2026-01-08 23:53:34] 2026-01-09 04:52:43,931 | INFO     | --- collectZombieJob: --- 10, [19276]
[2026-01-08 23:53:34] 2026-01-09 04:52:43,932 | INFO     | zombie collector waiting for pid 19276
[2026-01-08 23:53:34] 2026-01-09 04:52:43,932 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 23:53:34] 2026-01-09 04:52:43,932 | INFO     | collected zombie processes
[2026-01-08 23:53:34] 2026-01-09 04:52:43,932 | INFO     | will attempt to kill all subprocesses of pid=19276
[2026-01-08 23:53:34] 2026-01-09 04:52:44,028 | INFO     | process IDs to be killed: [19276] (in reverse order)
[2026-01-08 23:53:34] 2026-01-09 04:52:44,168 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 23:53:34] 2026-01-09 04:52:44,168 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 23:53:34] 2026-01-09 04:52:44,171 | INFO     | did not find any defunct processes belonging to 19276
[2026-01-08 23:53:34] 2026-01-09 04:52:44,173 | INFO     | did not find any defunct processes belonging to 19276
[2026-01-08 23:53:34] 2026-01-09 04:52:44,173 | INFO     | ready for new job
[2026-01-08 23:53:34] 2026-01-09 04:52:44,173 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 23:53:34] 2026-01-09 04:52:44,175 | INFO     | ***************************************
[2026-01-08 23:53:34] 2026-01-09 04:52:44,175 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 23:53:34] 2026-01-09 04:52:44,175 | INFO     | ***************************************
[2026-01-08 23:53:34] 2026-01-09 04:52:44,175 | INFO     | 
[2026-01-08 23:53:34] 2026-01-09 04:52:44,176 | INFO     | architecture information:
[2026-01-08 23:53:34] 2026-01-09 04:52:44,177 | INFO     | executing command: cat /etc/os-release
[2026-01-08 23:53:34] 2026-01-09 04:52:44,188 | INFO     | cat /etc/os-release:
[2026-01-08 23:53:34] NAME="CentOS Linux"
[2026-01-08 23:53:34] VERSION="7 (Core)"
[2026-01-08 23:53:34] ID="centos"
[2026-01-08 23:53:34] ID_LIKE="rhel fedora"
[2026-01-08 23:53:34] VERSION_ID="7"
[2026-01-08 23:53:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 23:53:34] ANSI_COLOR="0;31"
[2026-01-08 23:53:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 23:53:34] HOME_URL="https://www.centos.org/"
[2026-01-08 23:53:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 23:53:34] 
[2026-01-08 23:53:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 23:53:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 23:53:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 23:53:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 23:53:34] 
[2026-01-08 23:53:34] 2026-01-09 04:52:44,188 | INFO     | ***************************************
[2026-01-08 23:53:34] 2026-01-09 04:52:44,691 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-08 23:53:34] 2026-01-09 04:52:44,702 | INFO     | sufficient remaining disk space (28987883520 B)
[2026-01-08 23:53:34] 2026-01-09 04:52:44,702 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 23:53:34] 2026-01-09 04:52:44,702 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 23:53:34] 2026-01-09 04:52:44,702 | INFO     | update_server=False
[2026-01-08 23:53:34] 2026-01-09 04:52:44,702 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 23:53:34] 2026-01-09 04:52:44,703 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 23:53:34] 2026-01-09 04:52:44,703 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-08 23:53:34] 2026-01-09 04:52:44,703 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 23:53:34] 2026-01-09 04:52:44,703 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 23:53:34] 2026-01-09 04:52:44,703 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 23:53:34] 2026-01-09 04:52:44,747 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 23:53:34] 2026-01-09 04:52:44,747 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 23:53:34] 2026-01-09 04:52:44,748 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 23:53:34] 2026-01-09 04:52:44,748 | INFO     | will abort loop
[2026-01-08 23:53:34] 2026-01-09 04:52:44,906 | INFO     | all data control threads have been joined
[2026-01-08 23:53:34] 2026-01-09 04:52:45,462 | INFO     | all job control threads have been joined
[2026-01-08 23:53:34] 2026-01-09 04:52:45,701 | INFO     | all payload control threads have been joined
[2026-01-08 23:53:34] 2026-01-09 04:52:45,707 | INFO     | [job] retrieve thread has finished
[2026-01-08 23:53:34] 2026-01-09 04:52:45,753 | INFO     | [job] job monitor thread has finished
[2026-01-08 23:53:34] 2026-01-09 04:52:45,792 | INFO     | [payload] validate_post thread has finished
[2026-01-08 23:53:34] 2026-01-09 04:52:45,883 | INFO     | [payload] failed_post thread has finished
[2026-01-08 23:53:34] 2026-01-09 04:52:45,912 | INFO     | [data] control thread has finished
[2026-01-08 23:53:34] 2026-01-09 04:52:45,981 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 23:53:34] 2026-01-09 04:52:46,057 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 23:53:34] 2026-01-09 04:52:46,467 | INFO     | [job] control thread has finished
[2026-01-08 23:53:34] 2026-01-09 04:52:46,512 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 23:53:34] 2026-01-09 04:52:46,706 | INFO     | [payload] control thread has finished
[2026-01-08 23:53:34] 2026-01-09 04:52:46,952 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 23:53:34] 2026-01-09 04:52:47,171 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 23:53:34] 2026-01-09 04:52:47,177 | INFO     | [data] copytool_in thread has finished
[2026-01-08 23:53:34] 2026-01-09 04:52:47,177 | INFO     | [job] validate thread has finished
[2026-01-08 23:53:34] 2026-01-09 04:52:47,696 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 23:53:34] 2026-01-09 04:52:48,062 | INFO     | [data] copytool_out thread has finished
[2026-01-08 23:53:34] 2026-01-09 04:52:48,701 | INFO     | [job] queue monitor thread has finished
[2026-01-08 23:53:34] 2026-01-09 04:52:48,708 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 23:53:34] 2026-01-09 04:53:28,129 | INFO     | [monitor] cgroup control has ended
[2026-01-08 23:53:34] 2026-01-09 04:53:28,894 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139810865321792)>', '<ExcThread(monitor, started 139810278717184)>']
[2026-01-08 23:53:34] 2026-01-09 04:53:29,899 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 23:53:34] 2026-01-09 04:53:29,899 | INFO     | [monitor] control thread has ended
[2026-01-08 23:53:34] 2026-01-09 04:53:33,902 | INFO     | all workflow threads have been joined
[2026-01-08 23:53:34] 2026-01-09 04:53:33,902 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 23:53:34] 2026-01-09 04:53:33,902 | INFO     | traces error code: 0
[2026-01-08 23:53:34] 2026-01-09 04:53:33,903 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 23:53:34] 2026-01-09 04:53:33,983 [wrapper] ==== pilot stdout END ====
[2026-01-08 23:53:34] 2026-01-09 04:53:33,985 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 23:53:34] 2026-01-09 04:53:33,987 [wrapper] pilotpid: 32558
[2026-01-08 23:53:34] 2026-01-09 04:53:33,989 [wrapper] Pilot exit status: 0
[2026-01-08 23:53:34] 2026-01-09 04:53:33,996 [wrapper] pandaids: 6963152256 6963152256
[2026-01-08 23:53:34] 2026-01-09 04:53:34,024 [wrapper] cleanup supervisor_pilot  5061 32560
[2026-01-08 23:53:34] 2026-01-09 04:53:34,027 [wrapper] Test setup, not cleaning
[2026-01-08 23:53:34] 2026-01-09 04:53:34,029 [wrapper] apfmon messages muted
[2026-01-08 23:53:34] 2026-01-09 04:53:34,031 [wrapper] ==== wrapper stdout END ====
[2026-01-08 23:53:34] 2026-01-09 04:53:34,033 [wrapper] ==== wrapper stderr END ====
[2026-01-08 23:53:34]  *** Error codes and diagnostics ***
[2026-01-08 23:53:34]     "exeErrorCode": 0,
[2026-01-08 23:53:34]     "exeErrorDiag": "",
[2026-01-08 23:53:34]     "pilotErrorCode": 0,
[2026-01-08 23:53:34]     "pilotErrorDiag": "",
[2026-01-08 23:53:34]  *** Listing of results directory ***
[2026-01-08 23:53:34] total 670512
[2026-01-08 23:53:34] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-08 23:53:34] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-08 23:53:34] -rwx------ 1 boincer umatlas     36322 Jan  8 11:04 runpilot2-wrapper.sh
[2026-01-08 23:53:34] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 11:04 queuedata.json
[2026-01-08 23:53:34] -rw-r--r-- 1 boincer umatlas       100 Jan  8 16:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 23:53:34] -rwxr-xr-x 1 boincer umatlas      7986 Jan  8 16:31 run_atlas
[2026-01-08 23:53:34] -rw-r--r-- 1 boincer umatlas       105 Jan  8 16:31 job.xml
[2026-01-08 23:53:34] -rw-r--r-- 3 boincer umatlas 227018089 Jan  8 16:31 EVNT.47898824._001138.pool.root.1
[2026-01-08 23:53:34] -rw-r--r-- 3 boincer umatlas 227018089 Jan  8 16:31 ATLAS.root_0
[2026-01-08 23:53:34] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 16:31 start_atlas.sh
[2026-01-08 23:53:34] drwxrwx--x 2 boincer umatlas      4096 Jan  8 16:31 shared
[2026-01-08 23:53:34] -rw-r--r-- 2 boincer umatlas    592396 Jan  8 16:31 input.tar.gz
[2026-01-08 23:53:34] -rw-r--r-- 1 boincer umatlas         0 Jan  8 16:31 boinc_lockfile
[2026-01-08 23:53:34] -rw-r--r-- 1 boincer umatlas      2519 Jan  8 19:30 pandaJob.out
[2026-01-08 23:53:34] -rw------- 1 boincer umatlas        57 Jan  8 19:30 setup.sh.local
[2026-01-08 23:53:34] -rw------- 1 boincer umatlas    989837 Jan  8 19:31 agis_schedconf.cvmfs.json
[2026-01-08 23:53:34] -rw-r--r-- 1 boincer umatlas      5952 Jan  8 23:47 init_data.xml
[2026-01-08 23:53:34] -rw------- 1 boincer umatlas 223326693 Jan  8 23:52 HITS.47898826._029057.pool.root.1
[2026-01-08 23:53:34] -rw-r--r-- 1 boincer umatlas       532 Jan  8 23:52 boinc_task_state.xml
[2026-01-08 23:53:34] -rw------- 1 boincer umatlas      1054 Jan  8 23:52 memory_monitor_summary.json
[2026-01-08 23:53:34] -rw------- 1 boincer umatlas   1516240 Jan  8 23:52 agis_ddmendpoints.agis.ALL.json
[2026-01-08 23:53:34] -rw------- 1 boincer umatlas    482196 Jan  8 23:52 log.47898826._029057.job.log.tgz.1
[2026-01-08 23:53:34] -rw------- 1 boincer umatlas      7857 Jan  8 23:52 heartbeat.json
[2026-01-08 23:53:34] -rw------- 1 boincer umatlas        96 Jan  8 23:52 pilot_heartbeat.json
[2026-01-08 23:53:34] -rw-r--r-- 1 boincer umatlas      8192 Jan  8 23:53 boinc_mmap_file
[2026-01-08 23:53:34] -rw-r--r-- 1 boincer umatlas        29 Jan  8 23:53 wrapper_checkpoint.txt
[2026-01-08 23:53:34] -rw------- 1 boincer umatlas      4738 Jan  8 23:53 pilotlog.txt
[2026-01-08 23:53:34] -rw------- 1 boincer umatlas   2178714 Jan  8 23:53 log.47898826._029057.job.log.1
[2026-01-08 23:53:34] -rw------- 1 boincer umatlas       357 Jan  8 23:53 output.list
[2026-01-08 23:53:34] -rw-r--r-- 1 boincer umatlas       620 Jan  8 23:53 runtime_log
[2026-01-08 23:53:34] -rw------- 1 boincer umatlas   2682880 Jan  8 23:53 result.tar.gz
[2026-01-08 23:53:34] -rw-r--r-- 1 boincer umatlas      9423 Jan  8 23:53 runtime_log.err
[2026-01-08 23:53:34] -rw------- 1 boincer umatlas       787 Jan  8 23:53 A77NDmff7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmxkKDmX3h0un.diag
[2026-01-08 23:53:34] -rw-r--r-- 1 boincer umatlas     23156 Jan  8 23:53 stderr.txt
[2026-01-08 23:53:34] HITS file was successfully produced:
[2026-01-08 23:53:34] -rw------- 1 boincer umatlas 223326693 Jan  8 23:52 shared/HITS.pool.root.1
[2026-01-08 23:53:34]  *** Contents of shared directory: ***
[2026-01-08 23:53:34] total 443016
[2026-01-08 23:53:34] -rw-r--r-- 3 boincer umatlas 227018089 Jan  8 16:31 ATLAS.root_0
[2026-01-08 23:53:34] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 16:31 start_atlas.sh
[2026-01-08 23:53:34] -rw-r--r-- 2 boincer umatlas    592396 Jan  8 16:31 input.tar.gz
[2026-01-08 23:53:34] -rw------- 1 boincer umatlas 223326693 Jan  8 23:52 HITS.pool.root.1
[2026-01-08 23:53:34] -rw------- 1 boincer umatlas   2682880 Jan  8 23:53 result.tar.gz
23:53:36 (21172): run_atlas exited; CPU time 120821.885316
23:53:36 (21172): called boinc_finish(0)

</stderr_txt>
]]>

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