Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:23:11 (2572685): wrapper (7.7.26015): starting
16:23:11 (2572685): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 16:23:11] Arguments: --nthreads 12
[2026-01-08 16:23:11] Threads: 12
[2026-01-08 16:23:11] Checking for CVMFS
[2026-01-08 16:23:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 16:23:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 16:23:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 16:23:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 16:23:12] 2.8.1.0 2454843 76 52476 154920 3 56 3983547 4096000 0 130560 0 74964 99.996 2753 524 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-08 16:23:12] CVMFS is ok
[2026-01-08 16:23:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 16:23:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 16:23:12] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-08 16:23:12] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-08 16:23:12] Further information can be found at the LHC@home message board.
[2026-01-08 16:23:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 16:23:12] Checking for apptainer binary...
[2026-01-08 16:23:12] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2026-01-08 16:23:12] apptainer is not installed, using version from CVMFS
[2026-01-08 16:23:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 16:23:12] farmville.blisteringsheep.pec
[2026-01-08 16:23:12] apptainer works
[2026-01-08 16:23:12] Set ATHENA_PROC_NUMBER=12
[2026-01-08 16:23:12] Set ATHENA_CORE_NUMBER=12
[2026-01-08 16:23:12] Starting ATLAS job with PandaID=6963152248
[2026-01-08 16:23:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/41 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 17:32:33]  *** The last 200 lines of the pilot log: ***
[2026-01-08 17:32:33]  mtime=0
[2026-01-08 17:32:33]  protocol_id=None
[2026-01-08 17:32:33]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-08 17:32:33]  replicas=None
[2026-01-08 17:32:33]  scope=mc23_13p6TeV
[2026-01-08 17:32:33]  status=None
[2026-01-08 17:32:33]  status_code=0
[2026-01-08 17:32:33]  storage_token=
[2026-01-08 17:32:33]  surl=/var/lib/boinc/slots/41/PanDA_Pilot-6963152248/log.47898826._029049.job.log.tgz.1
[2026-01-08 17:32:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/31/log.47898826._029049.job.log.tgz.1
[2026-01-08 17:32:33]  workdir=None
[2026-01-08 17:32:33] ]
[2026-01-08 17:32:33] 2026-01-08 22:31:49,686 | INFO     | transferring file log.47898826._029049.job.log.tgz.1 from /var/lib/boinc/slots/41/PanDA_Pilot-6963152248/log.47898826._029049.job.log.tgz.1 to /var/lib/boinc/slots
[2026-01-08 17:32:33] 2026-01-08 22:31:49,686 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/41/PanDA_Pilot-6963152248/log.47898826._029049.job.log.tgz.1 /var/lib/boinc/slots/41/log.47898826._029049.j
[2026-01-08 17:32:33] 2026-01-08 22:31:49,699 | INFO     | adding to output.list: log.47898826._029049.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/31/log.47898826._029049.job.log.tg
[2026-01-08 17:32:33] 2026-01-08 22:31:49,699 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-08 17:32:33] 2026-01-08 22:31:49,700 | INFO     | summary of transferred files:
[2026-01-08 17:32:33] 2026-01-08 22:31:49,700 | INFO     |  -- lfn=log.47898826._029049.job.log.tgz.1, status_code=0, status=transferred
[2026-01-08 17:32:33] 2026-01-08 22:31:49,700 | INFO     | stage-out finished correctly
[2026-01-08 17:32:33] 2026-01-08 22:31:50,367 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-08 17:32:33] 2026-01-08 22:31:50,450 | INFO     | job 6963152248 has state=finished
[2026-01-08 17:32:33] 2026-01-08 22:31:50,450 | INFO     | preparing for final server update for job 6963152248 in state='finished'
[2026-01-08 17:32:33] 2026-01-08 22:31:50,451 | INFO     | this job has now completed (state=finished)
[2026-01-08 17:32:33] 2026-01-08 22:31:50,451 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-08 17:32:33] 2026-01-08 22:31:50,451 | INFO     | log transfer has been attempted: DONE
[2026-01-08 17:32:33] 2026-01-08 22:31:50,451 | INFO     | job 6963152248 has finished - writing final server update
[2026-01-08 17:32:33] 2026-01-08 22:31:50,451 | INFO     | total number of processed events: 400 (read)
[2026-01-08 17:32:33] 2026-01-08 22:31:50,452 | INFO     | executing command: lscpu
[2026-01-08 17:32:33] 2026-01-08 22:31:50,474 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-08 17:32:33] 2026-01-08 22:31:51,137 | INFO     | time since job start (4110s) is within the limit (349056.0s)
[2026-01-08 17:32:33] 2026-01-08 22:31:51,768 | INFO     | monitor loop #307: job 0:6963152248 is in state 'finished'
[2026-01-08 17:32:33] 2026-01-08 22:31:51,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 17:32:33] 2026-01-08 22:31:53,142 | INFO     | time since job start (4112s) is within the limit (349056.0s)
[2026-01-08 17:32:33] 2026-01-08 22:31:54,271 | INFO     | monitor loop #308: job 0:6963152248 is in state 'finished'
[2026-01-08 17:32:33] 2026-01-08 22:31:54,271 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 17:32:33] 2026-01-08 22:31:54,393 | INFO     | PID=2576668 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 17:32:33] 2026-01-08 22:31:55,394 | INFO     | time since job start (4114s) is within the limit (349056.0s)
[2026-01-08 17:32:33] 2026-01-08 22:31:56,759 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 17:32:33] 2026-01-08 22:31:56,764 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2699.657187499999
[2026-01-08 17:32:33] 2026-01-08 22:31:56,772 | INFO     | using path: /var/lib/boinc/slots/41/PanDA_Pilot-6963152248/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 17:32:33] 2026-01-08 22:31:56,773 | INFO     | extracted standard info from prmon json
[2026-01-08 17:32:33] 2026-01-08 22:31:56,773 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 17:32:33] 2026-01-08 22:31:56,773 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 17:32:33] 2026-01-08 22:31:56,773 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 17:32:33] 2026-01-08 22:31:56,773 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 17:32:33] 2026-01-08 22:31:56,775 | INFO     | monitor loop #309: job 0:6963152248 is in state 'finished'
[2026-01-08 17:32:33] 2026-01-08 22:31:56,775 | INFO     | fitting pss+swap vs Time
[2026-01-08 17:32:33] 2026-01-08 22:31:56,775 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 17:32:33] 2026-01-08 22:31:56,775 | INFO     | sum of square deviations: 66959395.0
[2026-01-08 17:32:33] 2026-01-08 22:31:56,776 | INFO     | sum of deviations: -5334747070.0
[2026-01-08 17:32:33] 2026-01-08 22:31:56,776 | INFO     | mean x: 1767909527.5
[2026-01-08 17:32:33] 2026-01-08 22:31:56,776 | INFO     | mean y: 2993360.533333333
[2026-01-08 17:32:33] 2026-01-08 22:31:56,776 | INFO     | intersect: 140854776323.26334
[2026-01-08 17:32:33] 2026-01-08 22:31:56,776 | INFO     | chi2: 0.0264078278664454
[2026-01-08 17:32:33] 2026-01-08 22:31:56,776 | INFO     | current memory leak: -79.67 B/s (using 60 data points, chi2=0.03)
[2026-01-08 17:32:33] 2026-01-08 22:31:56,776 | INFO     | could have reported an average CPU frequency of 2881 MHz (6 samples)
[2026-01-08 17:32:33] 2026-01-08 22:31:56,776 | INFO     | ..............................
[2026-01-08 17:32:33] 2026-01-08 22:31:56,777 | INFO     | . Timing measurements:
[2026-01-08 17:32:33] 2026-01-08 22:31:56,777 | INFO     | . get job = 0 s
[2026-01-08 17:32:33] 2026-01-08 22:31:56,777 | INFO     | . initial setup = 2 s
[2026-01-08 17:32:33] 2026-01-08 22:31:56,777 | INFO     | . payload setup = 3 s
[2026-01-08 17:32:33] 2026-01-08 22:31:56,777 | INFO     | . stage-in = 0 s
[2026-01-08 17:32:33] 2026-01-08 22:31:56,777 | INFO     | . payload execution = 4086 s
[2026-01-08 17:32:33] 2026-01-08 22:31:56,777 | INFO     | . stage-out = 0 s
[2026-01-08 17:32:33] 2026-01-08 22:31:56,777 | INFO     | . log creation = 0 s
[2026-01-08 17:32:33] 2026-01-08 22:31:56,777 | INFO     | ..............................
[2026-01-08 17:32:33] 2026-01-08 22:31:56,833 | INFO     | 
[2026-01-08 17:32:33] 2026-01-08 22:31:56,833 | INFO     | job summary report
[2026-01-08 17:32:33] 2026-01-08 22:31:56,833 | INFO     | --------------------------------------------------
[2026-01-08 17:32:33] 2026-01-08 22:31:56,833 | INFO     | PanDA job id: 6963152248
[2026-01-08 17:32:33] 2026-01-08 22:31:56,833 | INFO     | task id: 47898826
[2026-01-08 17:32:33] 2026-01-08 22:31:56,833 | INFO     | errors: (none)
[2026-01-08 17:32:33] 2026-01-08 22:31:56,834 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 17:32:33] 2026-01-08 22:31:56,834 | INFO     | pilot state: finished 
[2026-01-08 17:32:33] 2026-01-08 22:31:56,834 | INFO     | transexitcode: 0
[2026-01-08 17:32:33] 2026-01-08 22:31:56,834 | INFO     | exeerrorcode: 0
[2026-01-08 17:32:33] 2026-01-08 22:31:56,834 | INFO     | exeerrordiag: 
[2026-01-08 17:32:33] 2026-01-08 22:31:56,834 | INFO     | exitcode: 0
[2026-01-08 17:32:33] 2026-01-08 22:31:56,834 | INFO     | exitmsg: OK
[2026-01-08 17:32:33] 2026-01-08 22:31:56,834 | INFO     | cpuconsumptiontime: 46047 s
[2026-01-08 17:32:33] 2026-01-08 22:31:56,834 | INFO     | nevents: 400
[2026-01-08 17:32:33] 2026-01-08 22:31:56,834 | INFO     | neventsw: 0
[2026-01-08 17:32:33] 2026-01-08 22:31:56,834 | INFO     | pid: 2583817
[2026-01-08 17:32:33] 2026-01-08 22:31:56,834 | INFO     | pgrp: 2583817
[2026-01-08 17:32:33] 2026-01-08 22:31:56,835 | INFO     | corecount: 12
[2026-01-08 17:32:33] 2026-01-08 22:31:56,835 | INFO     | event service: False
[2026-01-08 17:32:33] 2026-01-08 22:31:56,835 | INFO     | sizes: {0: 2283969, 3: 2284231, 11: 2284259, 4093: 2310206, 4094: 2319262, 4101: 2319400}
[2026-01-08 17:32:33] 2026-01-08 22:31:56,835 | INFO     | --------------------------------------------------
[2026-01-08 17:32:33] 2026-01-08 22:31:56,835 | INFO     | 
[2026-01-08 17:32:33] 2026-01-08 22:31:56,835 | INFO     | executing command: ls -lF /var/lib/boinc/slots/41
[2026-01-08 17:32:33] 2026-01-08 22:31:56,852 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,852 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,852 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,852 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,853 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,853 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,853 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,853 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,853 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,853 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,853 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,853 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,853 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,853 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,853 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,854 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,854 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,854 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 17:32:33] 2026-01-08 22:31:56,854 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,854 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 17:32:33] 2026-01-08 22:31:56,854 | INFO     | job 6963152248 has completed (purged errors)
[2026-01-08 17:32:33] 2026-01-08 22:31:56,854 | INFO     | overall cleanup function is called
[2026-01-08 17:32:33] 2026-01-08 22:31:57,862 | INFO     | --- collectZombieJob: --- 10, [2583817]
[2026-01-08 17:32:33] 2026-01-08 22:31:57,862 | INFO     | zombie collector waiting for pid 2583817
[2026-01-08 17:32:33] 2026-01-08 22:31:57,862 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 17:32:33] 2026-01-08 22:31:57,862 | INFO     | collected zombie processes
[2026-01-08 17:32:33] 2026-01-08 22:31:57,862 | INFO     | will attempt to kill all subprocesses of pid=2583817
[2026-01-08 17:32:33] 2026-01-08 22:31:58,029 | INFO     | process IDs to be killed: [2583817] (in reverse order)
[2026-01-08 17:32:33] 2026-01-08 22:31:58,071 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 17:32:33] 2026-01-08 22:31:58,072 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 17:32:33] 2026-01-08 22:31:58,075 | INFO     | did not find any defunct processes belonging to 2583817
[2026-01-08 17:32:33] 2026-01-08 22:31:58,078 | INFO     | did not find any defunct processes belonging to 2583817
[2026-01-08 17:32:33] 2026-01-08 22:31:58,078 | INFO     | ready for new job
[2026-01-08 17:32:33] 2026-01-08 22:31:58,078 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 17:32:33] 2026-01-08 22:31:58,079 | INFO     | ***************************************
[2026-01-08 17:32:33] 2026-01-08 22:31:58,079 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 17:32:33] 2026-01-08 22:31:58,079 | INFO     | ***************************************
[2026-01-08 17:32:33] 2026-01-08 22:31:58,079 | INFO     | 
[2026-01-08 17:32:33] 2026-01-08 22:31:58,081 | INFO     | architecture information:
[2026-01-08 17:32:33] 2026-01-08 22:31:58,081 | INFO     | executing command: cat /etc/os-release
[2026-01-08 17:32:33] 2026-01-08 22:31:58,089 | INFO     | cat /etc/os-release:
[2026-01-08 17:32:33] NAME="CentOS Linux"
[2026-01-08 17:32:33] VERSION="7 (Core)"
[2026-01-08 17:32:33] ID="centos"
[2026-01-08 17:32:33] ID_LIKE="rhel fedora"
[2026-01-08 17:32:33] VERSION_ID="7"
[2026-01-08 17:32:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 17:32:33] ANSI_COLOR="0;31"
[2026-01-08 17:32:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 17:32:33] HOME_URL="https://www.centos.org/"
[2026-01-08 17:32:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 17:32:33] 
[2026-01-08 17:32:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 17:32:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 17:32:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 17:32:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 17:32:33] 
[2026-01-08 17:32:33] 2026-01-08 22:31:58,089 | INFO     | ***************************************
[2026-01-08 17:32:33] 2026-01-08 22:31:58,591 | INFO     | executing command: df -mP /var/lib/boinc/slots/41
[2026-01-08 17:32:33] 2026-01-08 22:31:58,601 | INFO     | sufficient remaining disk space (384501284864 B)
[2026-01-08 17:32:33] 2026-01-08 22:31:58,602 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 17:32:33] 2026-01-08 22:31:58,602 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 17:32:33] 2026-01-08 22:31:58,602 | INFO     | update_server=False
[2026-01-08 17:32:33] 2026-01-08 22:31:58,602 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 17:32:33] 2026-01-08 22:31:58,602 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 17:32:33] 2026-01-08 22:31:58,602 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 17:32:33] 2026-01-08 22:31:58,602 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 17:32:33] 2026-01-08 22:31:58,603 | INFO     | aborting loop
[2026-01-08 17:32:33] 2026-01-08 22:31:59,371 | INFO     | all data control threads have been joined
[2026-01-08 17:32:33] 2026-01-08 22:31:59,607 | INFO     | [job] retrieve thread has finished
[2026-01-08 17:32:33] 2026-01-08 22:31:59,607 | INFO     | [job] job monitor thread has finished
[2026-01-08 17:32:33] 2026-01-08 22:31:59,608 | INFO     | [job] queue monitor thread has finished
[2026-01-08 17:32:33] 2026-01-08 22:31:59,621 | INFO     | all payload control threads have been joined
[2026-01-08 17:32:33] 2026-01-08 22:32:00,181 | INFO     | [payload] failed_post thread has finished
[2026-01-08 17:32:33] 2026-01-08 22:32:00,203 | INFO     | all job control threads have been joined
[2026-01-08 17:32:33] 2026-01-08 22:32:00,376 | INFO     | [data] control thread has finished
[2026-01-08 17:32:33] 2026-01-08 22:32:00,442 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 17:32:33] 2026-01-08 22:32:00,464 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 17:32:33] 2026-01-08 22:32:00,590 | INFO     | [job] validate thread has finished
[2026-01-08 17:32:33] 2026-01-08 22:32:00,608 | INFO     | [data] copytool_out thread has finished
[2026-01-08 17:32:33] 2026-01-08 22:32:00,626 | INFO     | [payload] control thread has finished
[2026-01-08 17:32:33] 2026-01-08 22:32:00,940 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 17:32:33] 2026-01-08 22:32:00,958 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 17:32:33] 2026-01-08 22:32:01,027 | INFO     | [data] copytool_in thread has finished
[2026-01-08 17:32:33] 2026-01-08 22:32:01,057 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 17:32:33] 2026-01-08 22:32:01,179 | INFO     | [payload] validate_post thread has finished
[2026-01-08 17:32:33] 2026-01-08 22:32:01,208 | INFO     | [job] control thread has finished
[2026-01-08 17:32:33] 2026-01-08 22:32:04,958 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 17:32:33] 2026-01-08 22:32:27,696 | INFO     | [monitor] cgroup control has ended
[2026-01-08 17:32:33] 2026-01-08 22:32:28,351 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140543165073216)>', '<ExcThread(monitor, started 140542763575040)>']
[2026-01-08 17:32:33] 2026-01-08 22:32:28,664 | INFO     | PID=2576668 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 17:32:33] 2026-01-08 22:32:28,665 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 17:32:33] 2026-01-08 22:32:28,665 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 17:32:33] 2026-01-08 22:32:28,665 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 17:32:33] 2026-01-08 22:32:28,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 17:32:33] 2026-01-08 22:32:28,665 | INFO     | [monitor] control thread has ended
[2026-01-08 17:32:33] 2026-01-08 22:32:33,360 | INFO     | all workflow threads have been joined
[2026-01-08 17:32:33] 2026-01-08 22:32:33,360 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 17:32:33] 2026-01-08 22:32:33,360 | INFO     | traces error code: 0
[2026-01-08 17:32:33] 2026-01-08 22:32:33,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 17:32:33] 2026-01-08 22:32:33,424 [wrapper] ==== pilot stdout END ====
[2026-01-08 17:32:33] 2026-01-08 22:32:33,426 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 17:32:33] 2026-01-08 22:32:33,427 [wrapper] pilotpid: 2576668
[2026-01-08 17:32:33] 2026-01-08 22:32:33,428 [wrapper] Pilot exit status: 0
[2026-01-08 17:32:33] 2026-01-08 22:32:33,434 [wrapper] pandaids: 6963152248
[2026-01-08 17:32:33] 2026-01-08 22:32:33,458 [wrapper] cleanup supervisor_pilot 2666617 2576669
[2026-01-08 17:32:33] 2026-01-08 22:32:33,460 [wrapper] Test setup, not cleaning
[2026-01-08 17:32:33] 2026-01-08 22:32:33,462 [wrapper] apfmon messages muted
[2026-01-08 17:32:33] 2026-01-08 22:32:33,463 [wrapper] ==== wrapper stdout END ====
[2026-01-08 17:32:33] 2026-01-08 22:32:33,464 [wrapper] ==== wrapper stderr END ====
[2026-01-08 17:32:33]  *** Error codes and diagnostics ***
[2026-01-08 17:32:33]     "exeErrorCode": 0,
[2026-01-08 17:32:33]     "exeErrorDiag": "",
[2026-01-08 17:32:33]     "pilotErrorCode": 0,
[2026-01-08 17:32:33]     "pilotErrorDiag": "",
[2026-01-08 17:32:33]  *** Listing of results directory ***
[2026-01-08 17:32:33] total 441984
[2026-01-08 17:32:33] -rw-r--r-- 1 boinc boinc    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-08 17:32:33] -rwx------ 1 boinc boinc     36322 Jan  8 11:04 runpilot2-wrapper.sh
[2026-01-08 17:32:33] -rw-r--r-- 1 boinc boinc      5112 Jan  8 11:04 queuedata.json
[2026-01-08 17:32:33] -rw-r--r-- 1 boinc boinc       100 Jan  8 16:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 17:32:33] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 16:23 run_atlas
[2026-01-08 17:32:33] -rw-r--r-- 1 boinc boinc       105 Jan  8 16:23 job.xml
[2026-01-08 17:32:33] -rw-r--r-- 2 boinc boinc 227018089 Jan  8 16:23 EVNT.47898824._001138.pool.root.1
[2026-01-08 17:32:33] drwxrwx--x 1 boinc boinc        76 Jan  8 16:23 shared
[2026-01-08 17:32:33] -rw-r--r-- 2 boinc boinc    592396 Jan  8 16:23 input.tar.gz
[2026-01-08 17:32:33] -rw-r--r-- 2 boinc boinc     15847 Jan  8 16:23 start_atlas.sh
[2026-01-08 17:32:33] -rw-r--r-- 1 boinc boinc         0 Jan  8 16:23 boinc_setup_complete
[2026-01-08 17:32:33] -rw-r--r-- 1 boinc boinc      9257 Jan  8 16:23 init_data.xml
[2026-01-08 17:32:33] -rw-r--r-- 1 boinc boinc         0 Jan  8 16:23 boinc_lockfile
[2026-01-08 17:32:33] -rw-r--r-- 1 boinc boinc      2518 Jan  8 16:23 pandaJob.out
[2026-01-08 17:32:33] -rw------- 1 boinc boinc    989845 Jan  8 16:23 agis_schedconf.cvmfs.json
[2026-01-08 17:32:33] -rw------- 1 boinc boinc   1516240 Jan  8 16:23 agis_ddmendpoints.agis.ALL.json
[2026-01-08 17:32:33] drwx------ 1 boinc boinc       414 Jan  8 16:23 pilot3
[2026-01-08 17:32:33] -rw------- 1 boinc boinc 219745213 Jan  8 17:31 HITS.47898826._029049.pool.root.1
[2026-01-08 17:32:33] -rw-r--r-- 1 boinc boinc       529 Jan  8 17:31 boinc_task_state.xml
[2026-01-08 17:32:33] -rw------- 1 boinc boinc      1033 Jan  8 17:31 memory_monitor_summary.json
[2026-01-08 17:32:33] -rw------- 1 boinc boinc    366339 Jan  8 17:31 log.47898826._029049.job.log.tgz.1
[2026-01-08 17:32:33] -rw------- 1 boinc boinc      7832 Jan  8 17:31 heartbeat.json
[2026-01-08 17:32:33] -rw-r--r-- 1 boinc boinc      8192 Jan  8 17:32 boinc_mmap_file
[2026-01-08 17:32:33] -rw-r--r-- 1 boinc boinc        27 Jan  8 17:32 wrapper_checkpoint.txt
[2026-01-08 17:32:33] -rw------- 1 boinc boinc        95 Jan  8 17:32 pilot_heartbeat.json
[2026-01-08 17:32:33] -rw------- 1 boinc boinc      4750 Jan  8 17:32 pilotlog.txt
[2026-01-08 17:32:33] -rw------- 1 boinc boinc    601384 Jan  8 17:32 log.47898826._029049.job.log.1
[2026-01-08 17:32:33] -rw------- 1 boinc boinc       357 Jan  8 17:32 output.list
[2026-01-08 17:32:33] -rw-r--r-- 1 boinc boinc       620 Jan  8 17:32 runtime_log
[2026-01-08 17:32:33] -rw------- 1 boinc boinc    983040 Jan  8 17:32 result.tar.gz
[2026-01-08 17:32:33] -rw-r--r-- 1 boinc boinc      8920 Jan  8 17:32 runtime_log.err
[2026-01-08 17:32:33] -rw------- 1 boinc boinc       672 Jan  8 17:32 gj1NDmff7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhxkKDm92T1Hm.diag
[2026-01-08 17:32:33] -rw-r--r-- 1 boinc boinc     22184 Jan  8 17:32 stderr.txt
[2026-01-08 17:32:33] HITS file was successfully produced:
[2026-01-08 17:32:33] -rw------- 1 boinc boinc 219745213 Jan  8 17:31 shared/HITS.pool.root.1
[2026-01-08 17:32:33]  *** Contents of shared directory: ***
[2026-01-08 17:32:33] total 437852
[2026-01-08 17:32:33] -rw-r--r-- 2 boinc boinc 227018089 Jan  8 16:23 ATLAS.root_0
[2026-01-08 17:32:33] -rw-r--r-- 2 boinc boinc    592396 Jan  8 16:23 input.tar.gz
[2026-01-08 17:32:33] -rw-r--r-- 2 boinc boinc     15847 Jan  8 16:23 start_atlas.sh
[2026-01-08 17:32:33] -rw------- 1 boinc boinc 219745213 Jan  8 17:31 HITS.pool.root.1
[2026-01-08 17:32:33] -rw------- 1 boinc boinc    983040 Jan  8 17:32 result.tar.gz
17:32:35 (2572685): run_atlas exited; CPU time 46159.915132
17:32:35 (2572685): called boinc_finish(0)

</stderr_txt>
]]>

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