Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:07:02 (9173): wrapper (7.7.26015): starting
06:07:02 (9173): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 06:07:02] Arguments: --nthreads 8
[2026-01-09 06:07:02] Threads: 8
[2026-01-09 06:07:02] Checking for CVMFS
[2026-01-09 06:07:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 06:07:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 06:07:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 06:07:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 06:07:03] 2.11.2.0 12981 34972 99644 154931 0 61 15308886 25165824 0 130560 0 15261989 99.809 10955552 3908 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 06:07:03] CVMFS is ok
[2026-01-09 06:07:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 06:07:03] Checking for apptainer binary...
[2026-01-09 06:07:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 06:07:03] Running /usr/bin/apptainer --version
[2026-01-09 06:07:03] apptainer version 1.3.2-1.el7
[2026-01-09 06:07:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 06:07:04] cg-vwn366.simple-grid.lan
[2026-01-09 06:07:04] apptainer works
[2026-01-09 06:07:04] Set ATHENA_PROC_NUMBER=8
[2026-01-09 06:07:04] Set ATHENA_CORE_NUMBER=8
[2026-01-09 06:07:04] Starting ATLAS job with PandaID=6963151830
[2026-01-09 06:07:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 08:54:50]  *** The last 200 lines of the pilot log: ***
[2026-01-09 08:54:51] 2026-01-09 07:54:31,430 | INFO     | sum of square deviations: 1246386160.0
[2026-01-09 08:54:51] 2026-01-09 07:54:31,432 | INFO     | sum of deviations: 30734539936.999996
[2026-01-09 08:54:51] 2026-01-09 07:54:31,432 | INFO     | mean x: 1767940088.0
[2026-01-09 08:54:51] 2026-01-09 07:54:31,432 | INFO     | mean y: 2466193.4716981133
[2026-01-09 08:54:51] 2026-01-09 07:54:31,432 | INFO     | intersect: -43593031722.56686
[2026-01-09 08:54:51] 2026-01-09 07:54:31,432 | INFO     | chi2: 1.437081617031732
[2026-01-09 08:54:51] 2026-01-09 07:54:31,432 | INFO     | current chi2=1.437081617031732 (change=-0.02476870351640186 %)
[2026-01-09 08:54:51] 2026-01-09 07:54:31,433 | INFO     | right removable region: 158
[2026-01-09 08:54:51] 2026-01-09 07:54:31,433 | INFO     | sum of square deviations: 1246386160.0
[2026-01-09 08:54:51] 2026-01-09 07:54:31,434 | INFO     | sum of deviations: 6814062157.0
[2026-01-09 08:54:51] 2026-01-09 07:54:31,434 | INFO     | mean x: 1767940393.0
[2026-01-09 08:54:51] 2026-01-09 07:54:31,434 | INFO     | mean y: 2498689.459119497
[2026-01-09 08:54:51] 2026-01-09 07:54:31,434 | INFO     | intersect: -9662929341.10647
[2026-01-09 08:54:51] 2026-01-09 07:54:31,435 | INFO     | chi2: 0.018897706588451108
[2026-01-09 08:54:51] 2026-01-09 07:54:31,435 | INFO     | current chi2=0.018897706588451108 (change=98.68466849193925 %)
[2026-01-09 08:54:51] 2026-01-09 07:54:31,435 | INFO     | sum of square deviations: 1132458442.5
[2026-01-09 08:54:51] 2026-01-09 07:54:31,436 | INFO     | sum of deviations: 4065214155.000001
[2026-01-09 08:54:51] 2026-01-09 07:54:31,436 | INFO     | mean x: 1767940545.5
[2026-01-09 08:54:51] 2026-01-09 07:54:31,437 | INFO     | mean y: 2502330.25974026
[2026-01-09 08:54:51] 2026-01-09 07:54:31,437 | INFO     | intersect: -6343917689.267841
[2026-01-09 08:54:51] 2026-01-09 07:54:31,437 | INFO     | chi2: 0.001062042558771617
[2026-01-09 08:54:51] 2026-01-09 07:54:31,437 | INFO     | current chi2=0.001062042558771617 (change=94.38004525151923 %)
[2026-01-09 08:54:51] 2026-01-09 07:54:31,438 | INFO     | sum of square deviations: 1025693650.0
[2026-01-09 08:54:51] 2026-01-09 07:54:31,438 | INFO     | sum of deviations: 3063671381.0000005
[2026-01-09 08:54:51] 2026-01-09 07:54:31,439 | INFO     | mean x: 1767940698.0
[2026-01-09 08:54:51] 2026-01-09 07:54:31,439 | INFO     | mean y: 2503758.2281879196
[2026-01-09 08:54:51] 2026-01-09 07:54:31,439 | INFO     | intersect: -5278204881.98594
[2026-01-09 08:54:51] 2026-01-09 07:54:31,439 | INFO     | chi2: 0.0004059659154521516
[2026-01-09 08:54:51] 2026-01-09 07:54:31,439 | INFO     | current chi2=0.0004059659154521516 (change=61.77498612468967 %)
[2026-01-09 08:54:51] 2026-01-09 07:54:31,440 | INFO     | sum of square deviations: 925859220.0
[2026-01-09 08:54:51] 2026-01-09 07:54:31,440 | INFO     | sum of deviations: 2419409389.0
[2026-01-09 08:54:51] 2026-01-09 07:54:31,441 | INFO     | mean x: 1767940850.5
[2026-01-09 08:54:51] 2026-01-09 07:54:31,441 | INFO     | mean y: 2504740.777777778
[2026-01-09 08:54:51] 2026-01-09 07:54:31,441 | INFO     | intersect: -4617390595.898079
[2026-01-09 08:54:51] 2026-01-09 07:54:31,441 | INFO     | chi2: 0.0001822045691800456
[2026-01-09 08:54:51] 2026-01-09 07:54:31,441 | INFO     | current chi2=0.0001822045691800456 (change=55.118259379703815 %)
[2026-01-09 08:54:51] 2026-01-09 07:54:31,442 | INFO     | sum of square deviations: 832722590.0
[2026-01-09 08:54:51] 2026-01-09 07:54:31,442 | INFO     | sum of deviations: 2095414232.9999998
[2026-01-09 08:54:51] 2026-01-09 07:54:31,443 | INFO     | mean x: 1767941003.0
[2026-01-09 08:54:51] 2026-01-09 07:54:31,443 | INFO     | mean y: 2505271.021582734
[2026-01-09 08:54:51] 2026-01-09 07:54:31,443 | INFO     | intersect: -4446237666.035638
[2026-01-09 08:54:51] 2026-01-09 07:54:31,443 | INFO     | chi2: 0.00016963877838072332
[2026-01-09 08:54:51] 2026-01-09 07:54:31,443 | INFO     | current chi2=0.00016963877838072332 (change=6.896528915751486 %)
[2026-01-09 08:54:51] 2026-01-09 07:54:31,443 | INFO     | left removable region: 50
[2026-01-09 08:54:51] 2026-01-09 07:54:31,443 | INFO     | sum of square deviations: 390582207.0
[2026-01-09 08:54:51] 2026-01-09 07:54:31,444 | INFO     | sum of deviations: 741596215.0000001
[2026-01-09 08:54:51] 2026-01-09 07:54:31,444 | INFO     | mean x: 1767941582.5
[2026-01-09 08:54:51] 2026-01-09 07:54:31,444 | INFO     | mean y: 2507515.314814815
[2026-01-09 08:54:51] 2026-01-09 07:54:31,444 | INFO     | intersect: -3354273112.234638
[2026-01-09 08:54:51] 2026-01-09 07:54:31,445 | INFO     | chi2: 5.2101425897578524e-05
[2026-01-09 08:54:51] 2026-01-09 07:54:31,445 | INFO     | current memory leak: 1.90 B/s (using 108 data points, chi2=0.00)
[2026-01-09 08:54:51] 2026-01-09 07:54:31,445 | INFO     | could have reported an average CPU frequency of 1999 MHz (9 samples)
[2026-01-09 08:54:51] 2026-01-09 07:54:31,446 | INFO     | ..............................
[2026-01-09 08:54:51] 2026-01-09 07:54:31,446 | INFO     | . Timing measurements:
[2026-01-09 08:54:51] 2026-01-09 07:54:31,446 | INFO     | . get job = 0 s
[2026-01-09 08:54:51] 2026-01-09 07:54:31,446 | INFO     | . initial setup = 1 s
[2026-01-09 08:54:51] 2026-01-09 07:54:31,446 | INFO     | . payload setup = 7 s
[2026-01-09 08:54:51] 2026-01-09 07:54:31,446 | INFO     | . stage-in = 0 s
[2026-01-09 08:54:51] 2026-01-09 07:54:31,446 | INFO     | . payload execution = 9996 s
[2026-01-09 08:54:51] 2026-01-09 07:54:31,446 | INFO     | . stage-out = 1 s
[2026-01-09 08:54:51] 2026-01-09 07:54:31,446 | INFO     | . log creation = 0 s
[2026-01-09 08:54:51] 2026-01-09 07:54:31,447 | INFO     | ..............................
[2026-01-09 08:54:51] 2026-01-09 07:54:31,560 | INFO     | 
[2026-01-09 08:54:51] 2026-01-09 07:54:31,561 | INFO     | job summary report
[2026-01-09 08:54:51] 2026-01-09 07:54:31,561 | INFO     | --------------------------------------------------
[2026-01-09 08:54:51] 2026-01-09 07:54:31,561 | INFO     | PanDA job id: 6963151830
[2026-01-09 08:54:51] 2026-01-09 07:54:31,561 | INFO     | task id: 47898826
[2026-01-09 08:54:51] 2026-01-09 07:54:31,561 | INFO     | errors: (none)
[2026-01-09 08:54:51] 2026-01-09 07:54:31,561 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 08:54:51] 2026-01-09 07:54:31,561 | INFO     | pilot state: finished 
[2026-01-09 08:54:51] 2026-01-09 07:54:31,562 | INFO     | transexitcode: 0
[2026-01-09 08:54:51] 2026-01-09 07:54:31,562 | INFO     | exeerrorcode: 0
[2026-01-09 08:54:51] 2026-01-09 07:54:31,562 | INFO     | exeerrordiag: 
[2026-01-09 08:54:51] 2026-01-09 07:54:31,562 | INFO     | exitcode: 0
[2026-01-09 08:54:51] 2026-01-09 07:54:31,562 | INFO     | exitmsg: OK
[2026-01-09 08:54:51] 2026-01-09 07:54:31,562 | INFO     | cpuconsumptiontime: 75748 s
[2026-01-09 08:54:51] 2026-01-09 07:54:31,562 | INFO     | nevents: 400
[2026-01-09 08:54:51] 2026-01-09 07:54:31,562 | INFO     | neventsw: 0
[2026-01-09 08:54:51] 2026-01-09 07:54:31,562 | INFO     | pid: 19373
[2026-01-09 08:54:51] 2026-01-09 07:54:31,563 | INFO     | pgrp: 19373
[2026-01-09 08:54:51] 2026-01-09 07:54:31,563 | INFO     | corecount: 8
[2026-01-09 08:54:51] 2026-01-09 07:54:31,563 | INFO     | event service: False
[2026-01-09 08:54:51] 2026-01-09 07:54:31,563 | INFO     | sizes: {0: 2283970, 5: 2284232, 11: 2284288, 10007: 2312663, 10008: 2321661, 10011: 2321717, 10016: 2322103}
[2026-01-09 08:54:51] 2026-01-09 07:54:31,563 | INFO     | --------------------------------------------------
[2026-01-09 08:54:51] 2026-01-09 07:54:31,563 | INFO     | 
[2026-01-09 08:54:51] 2026-01-09 07:54:31,563 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-01-09 08:54:51] 2026-01-09 07:54:31,590 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,591 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,591 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,591 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,591 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,591 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,591 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,591 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,592 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,592 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,592 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,592 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,592 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,592 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,592 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,593 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,593 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,593 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 08:54:51] 2026-01-09 07:54:31,593 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,593 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 08:54:51] 2026-01-09 07:54:31,593 | INFO     | job 6963151830 has completed (purged errors)
[2026-01-09 08:54:51] 2026-01-09 07:54:31,594 | INFO     | overall cleanup function is called
[2026-01-09 08:54:51] 2026-01-09 07:54:32,602 | INFO     | --- collectZombieJob: --- 10, [19373]
[2026-01-09 08:54:51] 2026-01-09 07:54:32,602 | INFO     | zombie collector waiting for pid 19373
[2026-01-09 08:54:51] 2026-01-09 07:54:32,602 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 08:54:51] 2026-01-09 07:54:32,602 | INFO     | collected zombie processes
[2026-01-09 08:54:51] 2026-01-09 07:54:32,603 | INFO     | will attempt to kill all subprocesses of pid=19373
[2026-01-09 08:54:51] 2026-01-09 07:54:32,666 | INFO     | process IDs to be killed: [19373] (in reverse order)
[2026-01-09 08:54:51] 2026-01-09 07:54:32,720 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 08:54:51] 2026-01-09 07:54:32,720 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 08:54:51] 2026-01-09 07:54:32,722 | INFO     | did not find any defunct processes belonging to 19373
[2026-01-09 08:54:51] 2026-01-09 07:54:32,724 | INFO     | did not find any defunct processes belonging to 19373
[2026-01-09 08:54:51] 2026-01-09 07:54:32,724 | INFO     | ready for new job
[2026-01-09 08:54:51] 2026-01-09 07:54:32,724 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 08:54:51] 2026-01-09 07:54:32,726 | INFO     | ***************************************
[2026-01-09 08:54:51] 2026-01-09 07:54:32,726 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 08:54:51] 2026-01-09 07:54:32,726 | INFO     | ***************************************
[2026-01-09 08:54:51] 2026-01-09 07:54:32,726 | INFO     | 
[2026-01-09 08:54:51] 2026-01-09 07:54:32,727 | INFO     | pilot is running in a VM
[2026-01-09 08:54:51] 2026-01-09 07:54:32,727 | INFO     | architecture information:
[2026-01-09 08:54:51] 2026-01-09 07:54:32,728 | INFO     | executing command: cat /etc/os-release
[2026-01-09 08:54:51] 2026-01-09 07:54:32,757 | INFO     | cat /etc/os-release:
[2026-01-09 08:54:51] NAME="CentOS Linux"
[2026-01-09 08:54:51] VERSION="7 (Core)"
[2026-01-09 08:54:51] ID="centos"
[2026-01-09 08:54:51] ID_LIKE="rhel fedora"
[2026-01-09 08:54:51] VERSION_ID="7"
[2026-01-09 08:54:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 08:54:51] ANSI_COLOR="0;31"
[2026-01-09 08:54:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 08:54:51] HOME_URL="https://www.centos.org/"
[2026-01-09 08:54:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 08:54:51] 
[2026-01-09 08:54:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 08:54:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 08:54:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 08:54:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 08:54:51] 
[2026-01-09 08:54:51] 2026-01-09 07:54:32,758 | INFO     | ***************************************
[2026-01-09 08:54:51] 2026-01-09 07:54:33,261 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-01-09 08:54:51] 2026-01-09 07:54:33,294 | INFO     | sufficient remaining disk space (498122883072 B)
[2026-01-09 08:54:51] 2026-01-09 07:54:33,294 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 08:54:51] 2026-01-09 07:54:33,294 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 08:54:51] 2026-01-09 07:54:33,295 | INFO     | update_server=False
[2026-01-09 08:54:51] 2026-01-09 07:54:33,295 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 08:54:51] 2026-01-09 07:54:33,295 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-09 08:54:51] 2026-01-09 07:54:33,296 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 08:54:51] 2026-01-09 07:54:33,296 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 08:54:51] 2026-01-09 07:54:33,296 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 08:54:51] 2026-01-09 07:54:33,296 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:54:51] 2026-01-09 07:54:33,297 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 08:54:51] 2026-01-09 07:54:33,414 | INFO     | all data control threads have been joined
[2026-01-09 08:54:51] 2026-01-09 07:54:33,726 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 08:54:51] 2026-01-09 07:54:33,727 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 08:54:51] 2026-01-09 07:54:33,727 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:54:51] 2026-01-09 07:54:33,727 | INFO     | will abort loop
[2026-01-09 08:54:51] 2026-01-09 07:54:34,156 | INFO     | all payload control threads have been joined
[2026-01-09 08:54:51] 2026-01-09 07:54:34,170 | INFO     | all job control threads have been joined
[2026-01-09 08:54:51] 2026-01-09 07:54:34,207 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 08:54:51] 2026-01-09 07:54:34,300 | INFO     | [job] retrieve thread has finished
[2026-01-09 08:54:51] 2026-01-09 07:54:34,302 | INFO     | [job] queue monitor thread has finished
[2026-01-09 08:54:51] 2026-01-09 07:54:34,399 | INFO     | [job] validate thread has finished
[2026-01-09 08:54:51] 2026-01-09 07:54:34,420 | INFO     | [data] control thread has finished
[2026-01-09 08:54:51] 2026-01-09 07:54:34,733 | INFO     | [job] job monitor thread has finished
[2026-01-09 08:54:51] 2026-01-09 07:54:34,803 | INFO     | [payload] validate_post thread has finished
[2026-01-09 08:54:51] 2026-01-09 07:54:35,140 | INFO     | [payload] failed_post thread has finished
[2026-01-09 08:54:51] 2026-01-09 07:54:35,161 | INFO     | [payload] control thread has finished
[2026-01-09 08:54:51] 2026-01-09 07:54:35,176 | INFO     | [job] control thread has finished
[2026-01-09 08:54:51] 2026-01-09 07:54:35,221 | INFO     | [monitor] cgroup control has ended
[2026-01-09 08:54:51] 2026-01-09 07:54:35,398 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 08:54:51] 2026-01-09 07:54:35,438 | INFO     | [data] copytool_in thread has finished
[2026-01-09 08:54:51] 2026-01-09 07:54:35,499 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 08:54:51] 2026-01-09 07:54:35,604 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 08:54:51] 2026-01-09 07:54:36,213 | INFO     | [data] copytool_out thread has finished
[2026-01-09 08:54:51] 2026-01-09 07:54:37,303 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 08:54:51] 2026-01-09 07:54:43,924 | INFO     | job.realtimelogging is not enabled
[2026-01-09 08:54:51] 2026-01-09 07:54:44,930 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 08:54:51] 2026-01-09 07:54:45,634 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140068694705984)>', '<ExcThread(monitor, started 140067800606464)>']
[2026-01-09 08:54:51] 2026-01-09 07:54:46,363 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 08:54:51] 2026-01-09 07:54:46,363 | INFO     | [monitor] control thread has ended
[2026-01-09 08:54:51] 2026-01-09 07:54:50,660 | INFO     | all workflow threads have been joined
[2026-01-09 08:54:51] 2026-01-09 07:54:50,661 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 08:54:51] 2026-01-09 07:54:50,661 | INFO     | traces error code: 0
[2026-01-09 08:54:51] 2026-01-09 07:54:50,661 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 08:54:51] 2026-01-09 07:54:50,793 [wrapper] ==== pilot stdout END ====
[2026-01-09 08:54:51] 2026-01-09 07:54:50,797 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 08:54:51] 2026-01-09 07:54:50,801 [wrapper] pilotpid: 12936
[2026-01-09 08:54:51] 2026-01-09 07:54:50,804 [wrapper] Pilot exit status: 0
[2026-01-09 08:54:51] 2026-01-09 07:54:50,820 [wrapper] pandaids: 6963151830
[2026-01-09 08:54:51] 2026-01-09 07:54:50,851 [wrapper] cleanup supervisor_pilot  6139 12937
[2026-01-09 08:54:51] 2026-01-09 07:54:50,856 [wrapper] Test setup, not cleaning
[2026-01-09 08:54:51] 2026-01-09 07:54:50,860 [wrapper] apfmon messages muted
[2026-01-09 08:54:51] 2026-01-09 07:54:50,864 [wrapper] ==== wrapper stdout END ====
[2026-01-09 08:54:51] 2026-01-09 07:54:50,868 [wrapper] ==== wrapper stderr END ====
[2026-01-09 08:54:51]  *** Error codes and diagnostics ***
[2026-01-09 08:54:51]     "exeErrorCode": 0,
[2026-01-09 08:54:51]     "exeErrorDiag": "",
[2026-01-09 08:54:51]     "pilotErrorCode": 0,
[2026-01-09 08:54:51]     "pilotErrorDiag": "",
[2026-01-09 08:54:51]  *** Listing of results directory ***
[2026-01-09 08:54:51] total 434156
[2026-01-09 08:54:51] -rw-r--r--. 1 boinc boinc    579449 Jan  8 17:02 pilot3.tar.gz
[2026-01-09 08:54:51] -rwx------. 1 boinc boinc     36322 Jan  8 17:03 runpilot2-wrapper.sh
[2026-01-09 08:54:51] -rw-r--r--. 1 boinc boinc      5112 Jan  8 17:04 queuedata.json
[2026-01-09 08:54:51] -rw-r--r--. 1 boinc boinc       100 Jan  9 06:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 08:54:51] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 06:07 run_atlas
[2026-01-09 08:54:51] -rw-r--r--. 1 boinc boinc       105 Jan  9 06:07 job.xml
[2026-01-09 08:54:51] -rw-r--r--. 2 boinc boinc 222933054 Jan  9 06:07 EVNT.47898824._001127.pool.root.1
[2026-01-09 08:54:51] -rw-r--r--. 2 boinc boinc    592395 Jan  9 06:07 input.tar.gz
[2026-01-09 08:54:51] -rw-r--r--. 1 boinc boinc      6389 Jan  9 06:07 init_data.xml
[2026-01-09 08:54:51] -rw-r--r--. 2 boinc boinc     15847 Jan  9 06:07 start_atlas.sh
[2026-01-09 08:54:51] drwxrwx--x. 2 boinc boinc        68 Jan  9 06:07 shared
[2026-01-09 08:54:51] -rw-r--r--. 1 boinc boinc         0 Jan  9 06:07 boinc_lockfile
[2026-01-09 08:54:51] -rw-r--r--. 1 boinc boinc      2519 Jan  9 06:07 pandaJob.out
[2026-01-09 08:54:51] -rw-------. 1 boinc boinc    989771 Jan  9 06:07 agis_schedconf.cvmfs.json
[2026-01-09 08:54:51] -rw-------. 1 boinc boinc   1516240 Jan  9 06:07 agis_ddmendpoints.agis.ALL.json
[2026-01-09 08:54:51] drwx------. 5 boinc boinc      4096 Jan  9 06:07 pilot3
[2026-01-09 08:54:51] -rw-------. 1 boinc boinc 214256307 Jan  9 08:53 HITS.47898826._028781.pool.root.1
[2026-01-09 08:54:51] -rw-r--r--. 1 boinc boinc       531 Jan  9 08:54 boinc_task_state.xml
[2026-01-09 08:54:51] -rw-------. 1 boinc boinc      1017 Jan  9 08:54 memory_monitor_summary.json
[2026-01-09 08:54:51] -rw-------. 1 boinc boinc    392389 Jan  9 08:54 log.47898826._028781.job.log.tgz.1
[2026-01-09 08:54:51] -rw-------. 1 boinc boinc        95 Jan  9 08:54 pilot_heartbeat.json
[2026-01-09 08:54:51] -rw-------. 1 boinc boinc      7772 Jan  9 08:54 heartbeat.json
[2026-01-09 08:54:51] -rw-r--r--. 1 boinc boinc        28 Jan  9 08:54 wrapper_checkpoint.txt
[2026-01-09 08:54:51] -rw-r--r--. 1 boinc boinc      8192 Jan  9 08:54 boinc_mmap_file
[2026-01-09 08:54:51] -rw-------. 1 boinc boinc      4873 Jan  9 08:54 pilotlog.txt
[2026-01-09 08:54:51] -rw-------. 1 boinc boinc   1353109 Jan  9 08:54 log.47898826._028781.job.log.1
[2026-01-09 08:54:51] -rw-------. 1 boinc boinc       357 Jan  9 08:54 output.list
[2026-01-09 08:54:51] -rw-r--r--. 1 boinc boinc       620 Jan  9 08:54 runtime_log
[2026-01-09 08:54:51] -rw-------. 1 boinc boinc   1761280 Jan  9 08:54 result.tar.gz
[2026-01-09 08:54:51] -rw-------. 1 boinc boinc       656 Jan  9 08:54 WF7KDmTf7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdwkKDmY8U4Bn.diag
[2026-01-09 08:54:51] -rw-r--r--. 1 boinc boinc      8817 Jan  9 08:54 runtime_log.err
[2026-01-09 08:54:51] -rw-r--r--. 1 boinc boinc     20561 Jan  9 08:54 stderr.txt
[2026-01-09 08:54:51] HITS file was successfully produced:
[2026-01-09 08:54:51] -rw-------. 1 boinc boinc 214256307 Jan  9 08:53 shared/HITS.pool.root.1
[2026-01-09 08:54:51]  *** Contents of shared directory: ***
[2026-01-09 08:54:51] total 429264
[2026-01-09 08:54:51] -rw-r--r--. 2 boinc boinc 222933054 Jan  9 06:07 ATLAS.root_0
[2026-01-09 08:54:51] -rw-r--r--. 2 boinc boinc    592395 Jan  9 06:07 input.tar.gz
[2026-01-09 08:54:51] -rw-r--r--. 2 boinc boinc     15847 Jan  9 06:07 start_atlas.sh
[2026-01-09 08:54:51] -rw-------. 1 boinc boinc 214256307 Jan  9 08:53 HITS.pool.root.1
[2026-01-09 08:54:51] -rw-------. 1 boinc boinc   1761280 Jan  9 08:54 result.tar.gz
08:54:52 (9173): run_atlas exited; CPU time 75815.070305
08:54:52 (9173): called boinc_finish(0)

</stderr_txt>
]]>

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