Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:21:59 (4961): wrapper (7.7.26015): starting
16:21:59 (4961): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 16:21:59] Arguments: --nthreads 12
[2026-01-08 16:21:59] Threads: 12
[2026-01-08 16:21:59] Checking for CVMFS
[2026-01-08 16:22:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 16:22:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 16:22:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 16:22:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 16:22:00] 2.11.2.0 3009 135402 98588 154920 3 56 17335056 20275200 1 130560 0 48656488 99.878 8062324 39459 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 16:22:00] CVMFS is ok
[2026-01-08 16:22:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 16:22:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 16:22:00] Further information can be found at the LHC@home message board.
[2026-01-08 16:22:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 16:22:00] Checking for apptainer binary...
[2026-01-08 16:22:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 16:22:00] Running /usr/bin/apptainer --version
[2026-01-08 16:22:00] apptainer version 1.3.2-1.el7
[2026-01-08 16:22:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 16:22:01] c-115-42.aglt2.org
[2026-01-08 16:22:01] apptainer works
[2026-01-08 16:22:01] Set ATHENA_PROC_NUMBER=12
[2026-01-08 16:22:01] Set ATHENA_CORE_NUMBER=12
[2026-01-08 16:22:01] Starting ATLAS job with PandaID=6963151783
[2026-01-08 16:22:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 17:59:30]  *** The last 200 lines of the pilot log: ***
[2026-01-08 17:59:30]  scope=mc23_13p6TeV
[2026-01-08 17:59:30]  status=None
[2026-01-08 17:59:30]  status_code=0
[2026-01-08 17:59:30]  storage_token=
[2026-01-08 17:59:30]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6963151783/log.47898826._028734.job.log.tgz.1
[2026-01-08 17:59:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/85/1c/log.47898826._028734.job.log.tgz.1
[2026-01-08 17:59:30]  workdir=None
[2026-01-08 17:59:30] ]
[2026-01-08 17:59:30] 2026-01-08 22:58:33,348 | INFO     | transferring file log.47898826._028734.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963151783/log.47898826._028734.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-08 17:59:30] 2026-01-08 22:58:33,349 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963151783/log.47898826._028734.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._028734.job
[2026-01-08 17:59:30] 2026-01-08 22:58:33,370 | INFO     | adding to output.list: log.47898826._028734.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/85/1c/log.47898826._028734.job.log.tg
[2026-01-08 17:59:30] 2026-01-08 22:58:33,371 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-08 17:59:30] 2026-01-08 22:58:33,371 | INFO     | summary of transferred files:
[2026-01-08 17:59:30] 2026-01-08 22:58:33,371 | INFO     |  -- lfn=log.47898826._028734.job.log.tgz.1, status_code=0, status=transferred
[2026-01-08 17:59:30] 2026-01-08 22:58:33,371 | INFO     | stage-out finished correctly
[2026-01-08 17:59:30] 2026-01-08 22:58:34,554 | INFO     | time since job start (5778s) is within the limit (349056.0s)
[2026-01-08 17:59:30] 2026-01-08 22:58:35,562 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-08 17:59:30] 2026-01-08 22:58:36,063 | WARNING  | process 15130 can no longer be monitored (due to stat problems) - aborting
[2026-01-08 17:59:30] 2026-01-08 22:58:36,063 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963151783/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 17:59:30] 2026-01-08 22:58:36,144 | INFO     | number of running child processes to parent process 15130: 1
[2026-01-08 17:59:30] 2026-01-08 22:58:36,144 | INFO     | maximum number of monitored processes: 6
[2026-01-08 17:59:30] 2026-01-08 22:58:36,560 | INFO     | time since job start (5780s) is within the limit (349056.0s)
[2026-01-08 17:59:30] 2026-01-08 22:58:38,181 | INFO     | job 6963151783 has state=finished
[2026-01-08 17:59:30] 2026-01-08 22:58:38,181 | INFO     | preparing for final server update for job 6963151783 in state='finished'
[2026-01-08 17:59:30] 2026-01-08 22:58:38,182 | INFO     | this job has now completed (state=finished)
[2026-01-08 17:59:30] 2026-01-08 22:58:38,182 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-08 17:59:30] 2026-01-08 22:58:38,182 | INFO     | log transfer has been attempted: DONE
[2026-01-08 17:59:30] 2026-01-08 22:58:38,182 | INFO     | job 6963151783 has finished - writing final server update
[2026-01-08 17:59:30] 2026-01-08 22:58:38,183 | INFO     | total number of processed events: 400 (read)
[2026-01-08 17:59:30] 2026-01-08 22:58:38,184 | INFO     | executing command: lscpu
[2026-01-08 17:59:30] 2026-01-08 22:58:38,208 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-08 17:59:30] 2026-01-08 22:58:38,566 | INFO     | time since job start (5782s) is within the limit (349056.0s)
[2026-01-08 17:59:30] 2026-01-08 22:58:38,647 | INFO     | monitor loop #427: job 0:6963151783 is in state 'finished'
[2026-01-08 17:59:30] 2026-01-08 22:58:38,647 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 17:59:30] 2026-01-08 22:58:40,571 | INFO     | time since job start (5784s) is within the limit (349056.0s)
[2026-01-08 17:59:30] 2026-01-08 22:58:41,148 | INFO     | monitor loop #428: job 0:6963151783 is in state 'finished'
[2026-01-08 17:59:30] 2026-01-08 22:58:41,149 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 17:59:30] 2026-01-08 22:58:42,577 | INFO     | time since job start (5786s) is within the limit (349056.0s)
[2026-01-08 17:59:30] 2026-01-08 22:58:42,667 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-08 17:59:30] 2026-01-08 22:58:42,670 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2026-01-08 17:59:30] 2026-01-08 22:58:42,673 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963151783/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 17:59:30] 2026-01-08 22:58:42,674 | INFO     | extracted standard info from prmon json
[2026-01-08 17:59:30] 2026-01-08 22:58:42,674 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 17:59:30] 2026-01-08 22:58:42,674 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 17:59:30] 2026-01-08 22:58:42,675 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 17:59:30] 2026-01-08 22:58:42,675 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 17:59:30] 2026-01-08 22:58:42,677 | INFO     | fitting pss+swap vs Time
[2026-01-08 17:59:30] 2026-01-08 22:58:42,677 | INFO     | sum of square deviations: 211285822.0
[2026-01-08 17:59:30] 2026-01-08 22:58:42,678 | INFO     | sum of deviations: -9200301484.499998
[2026-01-08 17:59:30] 2026-01-08 22:58:42,678 | INFO     | mean x: 1767910322.5
[2026-01-08 17:59:30] 2026-01-08 22:58:42,678 | INFO     | mean y: 2825041.0113636362
[2026-01-08 17:59:30] 2026-01-08 22:58:42,678 | INFO     | intersect: 76985311658.40315
[2026-01-08 17:59:30] 2026-01-08 22:58:42,678 | INFO     | chi2: 0.21184819107723835
[2026-01-08 17:59:30] 2026-01-08 22:58:42,678 | INFO     | current memory leak: -43.54 B/s (using 88 data points, chi2=0.21)
[2026-01-08 17:59:30] 2026-01-08 22:58:42,679 | INFO     | could have reported an average CPU frequency of 2256 MHz (7 samples)
[2026-01-08 17:59:30] 2026-01-08 22:58:42,679 | INFO     | ..............................
[2026-01-08 17:59:30] 2026-01-08 22:58:42,679 | INFO     | . Timing measurements:
[2026-01-08 17:59:30] 2026-01-08 22:58:42,679 | INFO     | . get job = 0 s
[2026-01-08 17:59:30] 2026-01-08 22:58:42,679 | INFO     | . initial setup = 2 s
[2026-01-08 17:59:30] 2026-01-08 22:58:42,679 | INFO     | . payload setup = 6 s
[2026-01-08 17:59:30] 2026-01-08 22:58:42,679 | INFO     | . stage-in = 0 s
[2026-01-08 17:59:30] 2026-01-08 22:58:42,679 | INFO     | . payload execution = 5749 s
[2026-01-08 17:59:30] 2026-01-08 22:58:42,680 | INFO     | . stage-out = 0 s
[2026-01-08 17:59:30] 2026-01-08 22:58:42,680 | INFO     | . log creation = 0 s
[2026-01-08 17:59:30] 2026-01-08 22:58:42,680 | INFO     | ..............................
[2026-01-08 17:59:30] 2026-01-08 22:58:43,174 | INFO     | 
[2026-01-08 17:59:30] 2026-01-08 22:58:43,175 | INFO     | job summary report
[2026-01-08 17:59:30] 2026-01-08 22:58:43,175 | INFO     | --------------------------------------------------
[2026-01-08 17:59:30] 2026-01-08 22:58:43,175 | INFO     | PanDA job id: 6963151783
[2026-01-08 17:59:30] 2026-01-08 22:58:43,175 | INFO     | task id: 47898826
[2026-01-08 17:59:30] 2026-01-08 22:58:43,175 | INFO     | errors: (none)
[2026-01-08 17:59:30] 2026-01-08 22:58:43,175 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 17:59:30] 2026-01-08 22:58:43,176 | INFO     | pilot state: finished 
[2026-01-08 17:59:30] 2026-01-08 22:58:43,176 | INFO     | transexitcode: 0
[2026-01-08 17:59:30] 2026-01-08 22:58:43,176 | INFO     | exeerrorcode: 0
[2026-01-08 17:59:30] 2026-01-08 22:58:43,176 | INFO     | exeerrordiag: 
[2026-01-08 17:59:30] 2026-01-08 22:58:43,176 | INFO     | exitcode: 0
[2026-01-08 17:59:30] 2026-01-08 22:58:43,176 | INFO     | exitmsg: OK
[2026-01-08 17:59:30] 2026-01-08 22:58:43,177 | INFO     | cpuconsumptiontime: 61967 s
[2026-01-08 17:59:30] 2026-01-08 22:58:43,177 | INFO     | nevents: 400
[2026-01-08 17:59:30] 2026-01-08 22:58:43,177 | INFO     | neventsw: 0
[2026-01-08 17:59:30] 2026-01-08 22:58:43,177 | INFO     | pid: 15130
[2026-01-08 17:59:30] 2026-01-08 22:58:43,177 | INFO     | pgrp: 15130
[2026-01-08 17:59:30] 2026-01-08 22:58:43,177 | INFO     | corecount: 12
[2026-01-08 17:59:30] 2026-01-08 22:58:43,178 | INFO     | event service: False
[2026-01-08 17:59:30] 2026-01-08 22:58:43,178 | INFO     | sizes: {0: 2283970, 5: 2284232, 11: 2284288, 5760: 2310928, 5762: 2319926, 5764: 2319982, 5771: 2320304}
[2026-01-08 17:59:30] 2026-01-08 22:58:43,178 | INFO     | --------------------------------------------------
[2026-01-08 17:59:30] 2026-01-08 22:58:43,178 | INFO     | 
[2026-01-08 17:59:30] 2026-01-08 22:58:43,178 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 17:59:30] 2026-01-08 22:58:43,238 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,238 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,238 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,238 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,239 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,239 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,239 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,239 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,239 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,239 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,239 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,239 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,239 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,240 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,240 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,240 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,240 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,240 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 17:59:30] 2026-01-08 22:58:43,240 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,240 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 17:59:30] 2026-01-08 22:58:43,240 | INFO     | job 6963151783 has completed (purged errors)
[2026-01-08 17:59:30] 2026-01-08 22:58:43,241 | INFO     | overall cleanup function is called
[2026-01-08 17:59:30] 2026-01-08 22:58:44,248 | INFO     | --- collectZombieJob: --- 10, [15130]
[2026-01-08 17:59:30] 2026-01-08 22:58:44,248 | INFO     | zombie collector waiting for pid 15130
[2026-01-08 17:59:30] 2026-01-08 22:58:44,248 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 17:59:30] 2026-01-08 22:58:44,249 | INFO     | collected zombie processes
[2026-01-08 17:59:30] 2026-01-08 22:58:44,249 | INFO     | will attempt to kill all subprocesses of pid=15130
[2026-01-08 17:59:30] 2026-01-08 22:58:44,336 | INFO     | process IDs to be killed: [15130] (in reverse order)
[2026-01-08 17:59:30] 2026-01-08 22:58:44,389 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 17:59:30] 2026-01-08 22:58:44,389 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 17:59:30] 2026-01-08 22:58:44,393 | INFO     | did not find any defunct processes belonging to 15130
[2026-01-08 17:59:30] 2026-01-08 22:58:44,396 | INFO     | did not find any defunct processes belonging to 15130
[2026-01-08 17:59:30] 2026-01-08 22:58:44,396 | INFO     | ready for new job
[2026-01-08 17:59:30] 2026-01-08 22:58:44,396 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 17:59:30] 2026-01-08 22:58:44,397 | INFO     | ***************************************
[2026-01-08 17:59:30] 2026-01-08 22:58:44,397 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 17:59:30] 2026-01-08 22:58:44,397 | INFO     | ***************************************
[2026-01-08 17:59:30] 2026-01-08 22:58:44,397 | INFO     | 
[2026-01-08 17:59:30] 2026-01-08 22:58:44,398 | INFO     | architecture information:
[2026-01-08 17:59:30] 2026-01-08 22:58:44,398 | INFO     | executing command: cat /etc/os-release
[2026-01-08 17:59:30] 2026-01-08 22:58:44,412 | INFO     | cat /etc/os-release:
[2026-01-08 17:59:30] NAME="CentOS Linux"
[2026-01-08 17:59:30] VERSION="7 (Core)"
[2026-01-08 17:59:30] ID="centos"
[2026-01-08 17:59:30] ID_LIKE="rhel fedora"
[2026-01-08 17:59:30] VERSION_ID="7"
[2026-01-08 17:59:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 17:59:30] ANSI_COLOR="0;31"
[2026-01-08 17:59:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 17:59:30] HOME_URL="https://www.centos.org/"
[2026-01-08 17:59:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 17:59:30] 
[2026-01-08 17:59:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 17:59:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 17:59:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 17:59:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 17:59:30] 
[2026-01-08 17:59:30] 2026-01-08 22:58:44,413 | INFO     | ***************************************
[2026-01-08 17:59:30] 2026-01-08 22:58:44,916 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 17:59:30] 2026-01-08 22:58:44,934 | INFO     | sufficient remaining disk space (18536726528 B)
[2026-01-08 17:59:30] 2026-01-08 22:58:44,934 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 17:59:30] 2026-01-08 22:58:44,934 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 17:59:30] 2026-01-08 22:58:44,934 | INFO     | update_server=False
[2026-01-08 17:59:30] 2026-01-08 22:58:44,934 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 17:59:30] 2026-01-08 22:58:44,935 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 17:59:30] 2026-01-08 22:58:44,935 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 17:59:30] 2026-01-08 22:58:44,935 | INFO     | aborting loop
[2026-01-08 17:59:30] 2026-01-08 22:58:45,065 | INFO     | all data control threads have been joined
[2026-01-08 17:59:30] 2026-01-08 22:58:45,862 | INFO     | all job control threads have been joined
[2026-01-08 17:59:30] 2026-01-08 22:58:45,940 | INFO     | [job] retrieve thread has finished
[2026-01-08 17:59:30] 2026-01-08 22:58:45,941 | INFO     | [job] job monitor thread has finished
[2026-01-08 17:59:30] 2026-01-08 22:58:45,952 | INFO     | [payload] validate_post thread has finished
[2026-01-08 17:59:30] 2026-01-08 22:58:46,070 | INFO     | [data] control thread has finished
[2026-01-08 17:59:30] 2026-01-08 22:58:46,143 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 17:59:30] 2026-01-08 22:58:46,184 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 17:59:30] 2026-01-08 22:58:46,198 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 17:59:30] 2026-01-08 22:58:46,315 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 17:59:30] 2026-01-08 22:58:46,325 | INFO     | all payload control threads have been joined
[2026-01-08 17:59:30] 2026-01-08 22:58:46,700 | INFO     | [data] copytool_in thread has finished
[2026-01-08 17:59:30] 2026-01-08 22:58:46,867 | INFO     | [job] control thread has finished
[2026-01-08 17:59:30] 2026-01-08 22:58:46,941 | INFO     | [data] copytool_out thread has finished
[2026-01-08 17:59:30] 2026-01-08 22:58:46,989 | INFO     | [payload] failed_post thread has finished
[2026-01-08 17:59:30] 2026-01-08 22:58:47,330 | INFO     | [payload] control thread has finished
[2026-01-08 17:59:30] 2026-01-08 22:58:47,440 | INFO     | [job] validate thread has finished
[2026-01-08 17:59:30] 2026-01-08 22:58:47,765 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 17:59:30] 2026-01-08 22:58:48,770 | INFO     | [job] queue monitor thread has finished
[2026-01-08 17:59:30] 2026-01-08 22:58:50,148 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 17:59:30] 2026-01-08 22:58:55,612 | INFO     | job.realtimelogging is not enabled
[2026-01-08 17:59:30] 2026-01-08 22:58:56,617 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 17:59:30] 2026-01-08 22:59:15,772 | INFO     | PID=8741 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 17:59:30] 2026-01-08 22:59:15,772 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 17:59:30] 2026-01-08 22:59:15,772 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 17:59:30] 2026-01-08 22:59:15,772 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 17:59:30] 2026-01-08 22:59:24,868 | INFO     | [monitor] cgroup control has ended
[2026-01-08 17:59:30] 2026-01-08 22:59:25,009 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140124762535744)>', '<ExcThread(monitor, started 140124113336064)>']
[2026-01-08 17:59:30] 2026-01-08 22:59:25,816 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 17:59:30] 2026-01-08 22:59:25,816 | INFO     | [monitor] control thread has ended
[2026-01-08 17:59:30] 2026-01-08 22:59:30,034 | INFO     | all workflow threads have been joined
[2026-01-08 17:59:30] 2026-01-08 22:59:30,035 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 17:59:30] 2026-01-08 22:59:30,042 | INFO     | traces error code: 0
[2026-01-08 17:59:30] 2026-01-08 22:59:30,043 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 17:59:30] 2026-01-08 22:59:30,152 [wrapper] ==== pilot stdout END ====
[2026-01-08 17:59:30] 2026-01-08 22:59:30,156 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 17:59:30] 2026-01-08 22:59:30,160 [wrapper] pilotpid: 8741
[2026-01-08 17:59:30] 2026-01-08 22:59:30,163 [wrapper] Pilot exit status: 0
[2026-01-08 17:59:30] 2026-01-08 22:59:30,178 [wrapper] pandaids: 6963151783
[2026-01-08 17:59:30] 2026-01-08 22:59:30,222 [wrapper] cleanup supervisor_pilot 26492 8742
[2026-01-08 17:59:30] 2026-01-08 22:59:30,225 [wrapper] Test setup, not cleaning
[2026-01-08 17:59:30] 2026-01-08 22:59:30,229 [wrapper] apfmon messages muted
[2026-01-08 17:59:30] 2026-01-08 22:59:30,233 [wrapper] ==== wrapper stdout END ====
[2026-01-08 17:59:30] 2026-01-08 22:59:30,236 [wrapper] ==== wrapper stderr END ====
[2026-01-08 17:59:30]  *** Error codes and diagnostics ***
[2026-01-08 17:59:30]     "exeErrorCode": 0,
[2026-01-08 17:59:30]     "exeErrorDiag": "",
[2026-01-08 17:59:30]     "pilotErrorCode": 0,
[2026-01-08 17:59:30]     "pilotErrorDiag": "",
[2026-01-08 17:59:30]  *** Listing of results directory ***
[2026-01-08 17:59:30] total 440128
[2026-01-08 17:59:30] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-08 17:59:30] -rwx------ 1 boincer umatlas     36322 Jan  8 11:03 runpilot2-wrapper.sh
[2026-01-08 17:59:30] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 11:04 queuedata.json
[2026-01-08 17:59:30] -rw-r--r-- 1 boincer umatlas       100 Jan  8 16:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 17:59:30] -rwxr-xr-x 1 boincer umatlas      7986 Jan  8 16:21 run_atlas
[2026-01-08 17:59:30] -rw-r--r-- 1 boincer umatlas       105 Jan  8 16:21 job.xml
[2026-01-08 17:59:30] -rw-r--r-- 2 boincer umatlas 225454622 Jan  8 16:21 EVNT.47898824._001125.pool.root.1
[2026-01-08 17:59:30] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 16:21 start_atlas.sh
[2026-01-08 17:59:30] drwxrwx--x 2 boincer umatlas      4096 Jan  8 16:21 shared
[2026-01-08 17:59:30] -rw-r--r-- 2 boincer umatlas    592394 Jan  8 16:21 input.tar.gz
[2026-01-08 17:59:30] -rw-r--r-- 1 boincer umatlas         0 Jan  8 16:21 boinc_lockfile
[2026-01-08 17:59:30] -rw-r--r-- 1 boincer umatlas      2519 Jan  8 16:22 pandaJob.out
[2026-01-08 17:59:30] -rw------- 1 boincer umatlas        57 Jan  8 16:22 setup.sh.local
[2026-01-08 17:59:30] -rw------- 1 boincer umatlas    989845 Jan  8 16:22 agis_schedconf.cvmfs.json
[2026-01-08 17:59:30] -rw------- 1 boincer umatlas   1516240 Jan  8 16:22 agis_ddmendpoints.agis.ALL.json
[2026-01-08 17:59:30] drwx------ 5 boincer umatlas      4096 Jan  8 16:22 pilot3
[2026-01-08 17:59:30] -rw-r--r-- 1 boincer umatlas      5954 Jan  8 17:54 init_data.xml
[2026-01-08 17:59:30] -rw-r--r-- 1 boincer umatlas       529 Jan  8 17:57 boinc_task_state.xml
[2026-01-08 17:59:30] -rw------- 1 boincer umatlas 218860359 Jan  8 17:58 HITS.47898826._028734.pool.root.1
[2026-01-08 17:59:30] -rw------- 1 boincer umatlas      1048 Jan  8 17:58 memory_monitor_summary.json
[2026-01-08 17:59:30] -rw------- 1 boincer umatlas        95 Jan  8 17:58 pilot_heartbeat.json
[2026-01-08 17:59:30] -rw------- 1 boincer umatlas    403624 Jan  8 17:58 log.47898826._028734.job.log.tgz.1
[2026-01-08 17:59:30] -rw------- 1 boincer umatlas      7854 Jan  8 17:58 heartbeat.json
[2026-01-08 17:59:30] -rw-r--r-- 1 boincer umatlas      8192 Jan  8 17:59 boinc_mmap_file
[2026-01-08 17:59:30] -rw-r--r-- 1 boincer umatlas        27 Jan  8 17:59 wrapper_checkpoint.txt
[2026-01-08 17:59:30] -rw------- 1 boincer umatlas      4817 Jan  8 17:59 pilotlog.txt
[2026-01-08 17:59:30] -rw------- 1 boincer umatlas    824063 Jan  8 17:59 log.47898826._028734.job.log.1
[2026-01-08 17:59:30] -rw------- 1 boincer umatlas       357 Jan  8 17:59 output.list
[2026-01-08 17:59:30] -rw-r--r-- 1 boincer umatlas       620 Jan  8 17:59 runtime_log
[2026-01-08 17:59:30] -rw------- 1 boincer umatlas   1249280 Jan  8 17:59 result.tar.gz
[2026-01-08 17:59:30] -rw------- 1 boincer umatlas       659 Jan  8 17:59 ZNaKDmTf7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEwkKDmOmH1Vn.diag
[2026-01-08 17:59:30] -rw-r--r-- 1 boincer umatlas      9344 Jan  8 17:59 runtime_log.err
[2026-01-08 17:59:30] -rw-r--r-- 1 boincer umatlas     21974 Jan  8 17:59 stderr.txt
[2026-01-08 17:59:30] HITS file was successfully produced:
[2026-01-08 17:59:30] -rw------- 1 boincer umatlas 218860359 Jan  8 17:58 shared/HITS.pool.root.1
[2026-01-08 17:59:30]  *** Contents of shared directory: ***
[2026-01-08 17:59:30] total 435728
[2026-01-08 17:59:30] -rw-r--r-- 2 boincer umatlas 225454622 Jan  8 16:21 ATLAS.root_0
[2026-01-08 17:59:30] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 16:21 start_atlas.sh
[2026-01-08 17:59:30] -rw-r--r-- 2 boincer umatlas    592394 Jan  8 16:21 input.tar.gz
[2026-01-08 17:59:30] -rw------- 1 boincer umatlas 218860359 Jan  8 17:58 HITS.pool.root.1
[2026-01-08 17:59:30] -rw------- 1 boincer umatlas   1249280 Jan  8 17:59 result.tar.gz
17:59:31 (4961): run_atlas exited; CPU time 61946.428663
17:59:31 (4961): called boinc_finish(0)

</stderr_txt>
]]>

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