Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:04:18 (3398813): wrapper (7.7.26015): starting
11:04:18 (3398813): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 11:04:18] Arguments: --nthreads 3
[2026-01-09 11:04:18] Threads: 3
[2026-01-09 11:04:18] Checking for CVMFS
[2026-01-09 11:04:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 11:04:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 11:04:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 11:04:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 11:04:18] 2.9.2.0 2900183 2089 81476 154938 3 57 21026645 36864000 0 130560 0 1272047 99.988 75494 4642 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 11:04:18] CVMFS is ok
[2026-01-09 11:04:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 11:04:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 11:04:18] Further information can be found at the LHC@home message board.
[2026-01-09 11:04:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 11:04:18] Checking for apptainer binary...
[2026-01-09 11:04:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 11:04:18] Running /usr/bin/apptainer --version
[2026-01-09 11:04:18] apptainer version 1.4.1-1.1
[2026-01-09 11:04:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 11:04:18] thA312a
[2026-01-09 11:04:18] apptainer works
[2026-01-09 11:04:18] Set ATHENA_PROC_NUMBER=3
[2026-01-09 11:04:18] Set ATHENA_CORE_NUMBER=3
[2026-01-09 11:04:18] Starting ATLAS job with PandaID=6963151442
[2026-01-09 11:04:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 12:59:38]  *** The last 200 lines of the pilot log: ***
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | job 6963151442 has completed (purged errors)
[2026-01-09 12:59:38] 2026-01-09 11:58:49,058 | INFO     | overall cleanup function is called
[2026-01-09 12:59:38] 2026-01-09 11:58:50,065 | INFO     | --- collectZombieJob: --- 10, [3409003]
[2026-01-09 12:59:38] 2026-01-09 11:58:50,065 | INFO     | zombie collector waiting for pid 3409003
[2026-01-09 12:59:38] 2026-01-09 11:58:50,065 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 12:59:38] 2026-01-09 11:58:50,065 | INFO     | collected zombie processes
[2026-01-09 12:59:38] 2026-01-09 11:58:50,065 | INFO     | will attempt to kill all subprocesses of pid=3409003
[2026-01-09 12:59:38] 2026-01-09 11:58:50,118 | INFO     | process IDs to be killed: [3409003] (in reverse order)
[2026-01-09 12:59:38] 2026-01-09 11:58:50,146 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 12:59:38] 2026-01-09 11:58:50,146 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 12:59:38] 2026-01-09 11:58:50,148 | INFO     | did not find any defunct processes belonging to 3409003
[2026-01-09 12:59:38] 2026-01-09 11:58:50,149 | INFO     | did not find any defunct processes belonging to 3409003
[2026-01-09 12:59:38] 2026-01-09 11:58:50,149 | INFO     | ready for new job
[2026-01-09 12:59:38] 2026-01-09 11:58:50,149 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 12:59:38] 2026-01-09 11:58:50,150 | INFO     | ***************************************
[2026-01-09 12:59:38] 2026-01-09 11:58:50,150 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 12:59:38] 2026-01-09 11:58:50,150 | INFO     | ***************************************
[2026-01-09 12:59:38] 2026-01-09 11:58:50,150 | INFO     | 
[2026-01-09 12:59:38] 2026-01-09 11:58:50,151 | INFO     | architecture information:
[2026-01-09 12:59:38] 2026-01-09 11:58:50,151 | INFO     | executing command: cat /etc/os-release
[2026-01-09 12:59:38] 2026-01-09 11:58:50,160 | INFO     | cat /etc/os-release:
[2026-01-09 12:59:38] NAME="CentOS Linux"
[2026-01-09 12:59:38] VERSION="7 (Core)"
[2026-01-09 12:59:38] ID="centos"
[2026-01-09 12:59:38] ID_LIKE="rhel fedora"
[2026-01-09 12:59:38] VERSION_ID="7"
[2026-01-09 12:59:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 12:59:38] ANSI_COLOR="0;31"
[2026-01-09 12:59:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 12:59:38] HOME_URL="https://www.centos.org/"
[2026-01-09 12:59:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 12:59:38] 
[2026-01-09 12:59:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 12:59:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 12:59:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 12:59:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 12:59:38] 
[2026-01-09 12:59:38] 2026-01-09 11:58:50,160 | INFO     | ***************************************
[2026-01-09 12:59:38] 2026-01-09 11:58:50,664 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 12:59:38] 2026-01-09 11:58:50,678 | INFO     | sufficient remaining disk space (283421704192 B)
[2026-01-09 12:59:38] 2026-01-09 11:58:50,678 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 12:59:38] 2026-01-09 11:58:50,678 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 12:59:38] 2026-01-09 11:58:50,678 | INFO     | update_server=False
[2026-01-09 12:59:38] 2026-01-09 11:58:50,678 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 12:59:38] 2026-01-09 11:58:50,678 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:59:38] 2026-01-09 11:58:50,679 | INFO     | aborting loop
[2026-01-09 12:59:38] 2026-01-09 11:58:50,679 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:59:38] 2026-01-09 11:58:50,679 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 12:59:38] 2026-01-09 11:58:50,679 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-09 12:59:38] 2026-01-09 11:58:50,679 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 12:59:38] 2026-01-09 11:58:50,679 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 12:59:38] 2026-01-09 11:58:50,679 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 12:59:38] 2026-01-09 11:58:50,785 | INFO     | all job control threads have been joined
[2026-01-09 12:59:38] 2026-01-09 11:58:51,484 | INFO     | all data control threads have been joined
[2026-01-09 12:59:38] 2026-01-09 11:58:51,681 | INFO     | [job] retrieve thread has finished
[2026-01-09 12:59:38] 2026-01-09 11:58:51,683 | INFO     | [job] queue monitor thread has finished
[2026-01-09 12:59:38] 2026-01-09 11:58:51,684 | INFO     | [job] job monitor thread has finished
[2026-01-09 12:59:38] 2026-01-09 11:58:51,791 | INFO     | [job] control thread has finished
[2026-01-09 12:59:38] 2026-01-09 11:58:51,792 | INFO     | [payload] validate_post thread has finished
[2026-01-09 12:59:38] 2026-01-09 11:58:51,876 | INFO     | all payload control threads have been joined
[2026-01-09 12:59:38] 2026-01-09 11:58:51,997 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 12:59:38] 2026-01-09 11:58:52,227 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 12:59:38] 2026-01-09 11:58:52,327 | INFO     | [data] copytool_in thread has finished
[2026-01-09 12:59:38] 2026-01-09 11:58:52,490 | INFO     | [data] control thread has finished
[2026-01-09 12:59:38] 2026-01-09 11:58:52,542 | INFO     | [job] validate thread has finished
[2026-01-09 12:59:38] 2026-01-09 11:58:52,612 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 12:59:38] 2026-01-09 11:58:52,612 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 12:59:38] 2026-01-09 11:58:52,815 | INFO     | [payload] failed_post thread has finished
[2026-01-09 12:59:38] 2026-01-09 11:58:52,881 | INFO     | [payload] control thread has finished
[2026-01-09 12:59:38] 2026-01-09 11:58:54,003 | INFO     | [data] copytool_out thread has finished
[2026-01-09 12:59:38] 2026-01-09 11:58:54,686 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 12:59:38] 2026-01-09 11:59:01,176 | INFO     | job.realtimelogging is not enabled
[2026-01-09 12:59:38] 2026-01-09 11:59:02,182 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 12:59:38] 2026-01-09 11:59:32,609 | INFO     | [monitor] cgroup control has ended
[2026-01-09 12:59:38] 2026-01-09 11:59:33,501 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140503158232896)>', '<ExcThread(monitor, started 140501860738816)>']
[2026-01-09 12:59:38] 2026-01-09 11:59:33,904 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 12:59:38] 2026-01-09 11:59:33,905 | INFO     | [monitor] control thread has ended
[2026-01-09 12:59:38] 2026-01-09 11:59:38,527 | INFO     | all workflow threads have been joined
[2026-01-09 12:59:38] 2026-01-09 11:59:38,527 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 12:59:38] 2026-01-09 11:59:38,528 | INFO     | traces error code: 0
[2026-01-09 12:59:38] 2026-01-09 11:59:38,528 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 12:59:38] 2026-01-09 11:59:38,582 [wrapper] ==== pilot stdout END ====
[2026-01-09 12:59:38] 2026-01-09 11:59:38,584 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 12:59:38] 2026-01-09 11:59:38,587 [wrapper] pilotpid: 3402541
[2026-01-09 12:59:38] 2026-01-09 11:59:38,589 [wrapper] Pilot exit status: 0
[2026-01-09 12:59:38] 2026-01-09 11:59:38,597 [wrapper] pandaids: 6963151442
[2026-01-09 12:59:38] 2026-01-09 11:59:38,617 [wrapper] cleanup supervisor_pilot 3428875 3402542
[2026-01-09 12:59:38] 2026-01-09 11:59:38,619 [wrapper] Test setup, not cleaning
[2026-01-09 12:59:38] 2026-01-09 11:59:38,622 [wrapper] apfmon messages muted
[2026-01-09 12:59:38] 2026-01-09 11:59:38,624 [wrapper] ==== wrapper stdout END ====
[2026-01-09 12:59:38] 2026-01-09 11:59:38,627 [wrapper] ==== wrapper stderr END ====
[2026-01-09 12:59:38]  *** Error codes and diagnostics ***
[2026-01-09 12:59:38]     "exeErrorCode": 0,
[2026-01-09 12:59:38]     "exeErrorDiag": "",
[2026-01-09 12:59:38]     "pilotErrorCode": 0,
[2026-01-09 12:59:38]     "pilotErrorDiag": "",
[2026-01-09 12:59:38]  *** Listing of results directory ***
[2026-01-09 12:59:38] total 443364
[2026-01-09 12:59:38] -rw-r--r-- 1 boinc boinc      5112 Jan  8 17:02 queuedata.json
[2026-01-09 12:59:38] -rw-r--r-- 1 boinc boinc    579449 Jan  8 17:02 pilot3.tar.gz
[2026-01-09 12:59:38] -rwx------ 1 boinc boinc     36322 Jan  8 17:02 runpilot2-wrapper.sh
[2026-01-09 12:59:38] -rw-r--r-- 1 boinc boinc       100 Jan  9 11:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 12:59:38] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 11:04 run_atlas
[2026-01-09 12:59:38] -rw-r--r-- 1 boinc boinc       105 Jan  9 11:04 job.xml
[2026-01-09 12:59:38] -rw-r--r-- 2 boinc boinc 224577572 Jan  9 11:04 EVNT.47898824._001091.pool.root.1
[2026-01-09 12:59:38] drwxrwx--x 2 boinc boinc      4096 Jan  9 11:04 shared
[2026-01-09 12:59:38] -rw-r--r-- 2 boinc boinc    592394 Jan  9 11:04 input.tar.gz
[2026-01-09 12:59:38] -rw-r--r-- 2 boinc boinc     15847 Jan  9 11:04 start_atlas.sh
[2026-01-09 12:59:38] -rw-r--r-- 1 boinc boinc         0 Jan  9 11:04 boinc_setup_complete
[2026-01-09 12:59:38] -rw-r--r-- 1 boinc boinc      6447 Jan  9 11:04 init_data.xml
[2026-01-09 12:59:38] -rw-r--r-- 1 boinc boinc         0 Jan  9 11:04 boinc_lockfile
[2026-01-09 12:59:38] -rw-r--r-- 1 boinc boinc      2520 Jan  9 11:04 pandaJob.out
[2026-01-09 12:59:38] -rw------- 1 boinc boinc    989751 Jan  9 11:04 agis_schedconf.cvmfs.json
[2026-01-09 12:59:38] -rw------- 1 boinc boinc   1516240 Jan  9 11:04 agis_ddmendpoints.agis.ALL.json
[2026-01-09 12:59:38] drwx------ 5 boinc boinc      4096 Jan  9 11:04 pilot3
[2026-01-09 12:59:38] -rw------- 1 boinc boinc        95 Jan  9 12:58 pilot_heartbeat.json
[2026-01-09 12:59:38] -rw------- 1 boinc boinc 222990498 Jan  9 12:58 HITS.47898826._028480.pool.root.1
[2026-01-09 12:59:38] -rw-r--r-- 1 boinc boinc       529 Jan  9 12:58 boinc_task_state.xml
[2026-01-09 12:59:38] -rw------- 1 boinc boinc      1014 Jan  9 12:58 memory_monitor_summary.json
[2026-01-09 12:59:38] -rw------- 1 boinc boinc    275425 Jan  9 12:58 log.47898826._028480.job.log.tgz.1
[2026-01-09 12:59:38] -rw------- 1 boinc boinc      7746 Jan  9 12:58 heartbeat.json
[2026-01-09 12:59:38] -rw-r--r-- 1 boinc boinc        27 Jan  9 12:59 wrapper_checkpoint.txt
[2026-01-09 12:59:38] -rw-r--r-- 1 boinc boinc      8192 Jan  9 12:59 boinc_mmap_file
[2026-01-09 12:59:38] -rw------- 1 boinc boinc      4628 Jan  9 12:59 pilotlog.txt
[2026-01-09 12:59:38] -rw------- 1 boinc boinc    989335 Jan  9 12:59 log.47898826._028480.job.log.1
[2026-01-09 12:59:38] -rw------- 1 boinc boinc       357 Jan  9 12:59 output.list
[2026-01-09 12:59:38] -rw-r--r-- 1 boinc boinc       620 Jan  9 12:59 runtime_log
[2026-01-09 12:59:38] -rw------- 1 boinc boinc   1280000 Jan  9 12:59 result.tar.gz
[2026-01-09 12:59:38] -rw-r--r-- 1 boinc boinc      8902 Jan  9 12:59 runtime_log.err
[2026-01-09 12:59:38] -rw------- 1 boinc boinc       660 Jan  9 12:59 jbKKDm6d7x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUefKDm1PgRUn.diag
[2026-01-09 12:59:38] -rw-r--r-- 1 boinc boinc     12755 Jan  9 12:59 stderr.txt
[2026-01-09 12:59:38] HITS file was successfully produced:
[2026-01-09 12:59:38] -rw------- 1 boinc boinc 222990498 Jan  9 12:58 shared/HITS.pool.root.1
[2026-01-09 12:59:38]  *** Contents of shared directory: ***
[2026-01-09 12:59:38] total 438940
[2026-01-09 12:59:38] -rw-r--r-- 2 boinc boinc 224577572 Jan  9 11:04 ATLAS.root_0
[2026-01-09 12:59:38] -rw-r--r-- 2 boinc boinc    592394 Jan  9 11:04 input.tar.gz
[2026-01-09 12:59:38] -rw-r--r-- 2 boinc boinc     15847 Jan  9 11:04 start_atlas.sh
[2026-01-09 12:59:38] -rw------- 1 boinc boinc 222990498 Jan  9 12:58 HITS.pool.root.1
[2026-01-09 12:59:38] -rw------- 1 boinc boinc   1280000 Jan  9 12:59 result.tar.gz
12:59:40 (3398813): run_atlas exited; CPU time 19771.822555
12:59:40 (3398813): called boinc_finish(0)

</stderr_txt>
]]>

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