Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:02:41 (17972): wrapper (7.7.26015): starting
04:02:41 (17972): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 04:02:41] Arguments: --nthreads 8
[2026-01-09 04:02:41] Threads: 8
[2026-01-09 04:02:41] Checking for CVMFS
[2026-01-09 04:02:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 04:02:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 04:02:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 04:02:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 04:02:44] 2.11.2.0 24663 34851 93248 154927 3 101 17099345 25165825 1088 130560 0 15854790 99.810 11182386 2785 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 04:02:44] CVMFS is ok
[2026-01-09 04:02:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 04:02:44] Checking for apptainer binary...
[2026-01-09 04:02:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 04:02:44] Running /usr/bin/apptainer --version
[2026-01-09 04:02:44] apptainer version 1.3.2-1.el7
[2026-01-09 04:02:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 04:02:51] cg-vwn475.simple-grid.lan
[2026-01-09 04:02:51] apptainer works
[2026-01-09 04:02:51] Set ATHENA_PROC_NUMBER=8
[2026-01-09 04:02:51] Set ATHENA_CORE_NUMBER=8
[2026-01-09 04:02:51] Starting ATLAS job with PandaID=6963151818
[2026-01-09 04:02:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 06:50:40]  *** The last 200 lines of the pilot log: ***
[2026-01-09 06:50:40] 2026-01-09 05:49:38,648 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 06:50:40] 2026-01-09 05:49:38,652 | INFO     | fitting pss+swap vs Time
[2026-01-09 06:50:40] 2026-01-09 05:49:38,652 | INFO     | sum of square deviations: 1342841922.0
[2026-01-09 06:50:40] 2026-01-09 05:49:38,653 | INFO     | sum of deviations: 32424989810.000004
[2026-01-09 06:50:40] 2026-01-09 05:49:38,653 | INFO     | mean x: 1767932777.0
[2026-01-09 06:50:40] 2026-01-09 05:49:38,653 | INFO     | mean y: 2463367.564417178
[2026-01-09 06:50:40] 2026-01-09 05:49:38,654 | INFO     | intersect: -42687000924.41351
[2026-01-09 06:50:40] 2026-01-09 05:49:38,654 | INFO     | chi2: 1.464974348680633
[2026-01-09 06:50:40] 2026-01-09 05:49:38,654 | INFO     | sum of square deviations: 1223016419.5
[2026-01-09 06:50:40] 2026-01-09 05:49:38,655 | INFO     | sum of deviations: 31237236392.5
[2026-01-09 06:50:40] 2026-01-09 05:49:38,656 | INFO     | mean x: 1767932624.5
[2026-01-09 06:50:40] 2026-01-09 05:49:38,656 | INFO     | mean y: 2461855.474683544
[2026-01-09 06:50:40] 2026-01-09 05:49:38,656 | INFO     | intersect: -45152556864.63125
[2026-01-09 06:50:40] 2026-01-09 05:49:38,656 | INFO     | chi2: 1.465407902859872
[2026-01-09 06:50:40] 2026-01-09 05:49:38,656 | INFO     | current chi2=1.465407902859872 (change=-0.02959466011330047 %)
[2026-01-09 06:50:40] 2026-01-09 05:49:38,656 | INFO     | right removable region: 157
[2026-01-09 06:50:40] 2026-01-09 05:49:38,657 | INFO     | sum of square deviations: 1223016419.5
[2026-01-09 06:50:40] 2026-01-09 05:49:38,658 | INFO     | sum of deviations: 6337645782.500002
[2026-01-09 06:50:40] 2026-01-09 05:49:38,658 | INFO     | mean x: 1767932929.5
[2026-01-09 06:50:40] 2026-01-09 05:49:38,658 | INFO     | mean y: 2496178.3734177216
[2026-01-09 06:50:40] 2026-01-09 05:49:38,658 | INFO     | intersect: -9158895685.007488
[2026-01-09 06:50:40] 2026-01-09 05:49:38,658 | INFO     | chi2: 0.01573549941331918
[2026-01-09 06:50:40] 2026-01-09 05:49:38,659 | INFO     | current chi2=0.01573549941331918 (change=98.92588566977363 %)
[2026-01-09 06:50:40] 2026-01-09 05:49:38,659 | INFO     | sum of square deviations: 1110539892.0
[2026-01-09 06:50:40] 2026-01-09 05:49:38,660 | INFO     | sum of deviations: 4285913862.9999995
[2026-01-09 06:50:40] 2026-01-09 05:49:38,660 | INFO     | mean x: 1767933082.0
[2026-01-09 06:50:40] 2026-01-09 05:49:38,660 | INFO     | mean y: 2498898.895424837
[2026-01-09 06:50:40] 2026-01-09 05:49:38,660 | INFO     | intersect: -6820496798.5883665
[2026-01-09 06:50:40] 2026-01-09 05:49:38,661 | INFO     | chi2: 0.0010105792336027974
[2026-01-09 06:50:40] 2026-01-09 05:49:38,661 | INFO     | current chi2=0.0010105792336027974 (change=93.57771109096544 %)
[2026-01-09 06:50:40] 2026-01-09 05:49:38,661 | INFO     | sum of square deviations: 1005179777.0
[2026-01-09 06:50:40] 2026-01-09 05:49:38,662 | INFO     | sum of deviations: 3708753243.5000114
[2026-01-09 06:50:40] 2026-01-09 05:49:38,662 | INFO     | mean x: 1767933234.5
[2026-01-09 06:50:40] 2026-01-09 05:49:38,662 | INFO     | mean y: 2499742.3175675673
[2026-01-09 06:50:40] 2026-01-09 05:49:38,662 | INFO     | intersect: -6520540481.703315
[2026-01-09 06:50:40] 2026-01-09 05:49:38,663 | INFO     | chi2: 0.00020732634082805385
[2026-01-09 06:50:40] 2026-01-09 05:49:38,663 | INFO     | current chi2=0.00020732634082805385 (change=79.48440518721937 %)
[2026-01-09 06:50:40] 2026-01-09 05:49:38,663 | INFO     | sum of square deviations: 906703512.0
[2026-01-09 06:50:40] 2026-01-09 05:49:38,664 | INFO     | sum of deviations: 3273507904.0
[2026-01-09 06:50:40] 2026-01-09 05:49:38,664 | INFO     | mean x: 1767933387.0
[2026-01-09 06:50:40] 2026-01-09 05:49:38,664 | INFO     | mean y: 2500415.853146853
[2026-01-09 06:50:40] 2026-01-09 05:49:38,664 | INFO     | intersect: -6380340104.22415
[2026-01-09 06:50:40] 2026-01-09 05:49:38,665 | INFO     | chi2: 0.00019744715260627875
[2026-01-09 06:50:40] 2026-01-09 05:49:38,665 | INFO     | current chi2=0.00019744715260627875 (change=4.765042484383788 %)
[2026-01-09 06:50:40] 2026-01-09 05:49:38,665 | INFO     | left removable region: 40
[2026-01-09 06:50:40] 2026-01-09 05:49:38,665 | INFO     | sum of square deviations: 496597218.0
[2026-01-09 06:50:40] 2026-01-09 05:49:38,666 | INFO     | sum of deviations: 1624838882.9999998
[2026-01-09 06:50:40] 2026-01-09 05:49:38,666 | INFO     | mean x: 1767933814.0
[2026-01-09 06:50:40] 2026-01-09 05:49:38,666 | INFO     | mean y: 2502726.435897436
[2026-01-09 06:50:40] 2026-01-09 05:49:38,667 | INFO     | intersect: -5782079827.4633255
[2026-01-09 06:50:40] 2026-01-09 05:49:38,667 | INFO     | chi2: 0.00012554630724972627
[2026-01-09 06:50:40] 2026-01-09 05:49:38,667 | INFO     | current memory leak: 3.27 B/s (using 117 data points, chi2=0.00)
[2026-01-09 06:50:40] 2026-01-09 05:49:38,668 | INFO     | could have reported an average CPU frequency of 2249 MHz (9 samples)
[2026-01-09 06:50:40] 2026-01-09 05:49:38,668 | INFO     | ..............................
[2026-01-09 06:50:40] 2026-01-09 05:49:38,668 | INFO     | . Timing measurements:
[2026-01-09 06:50:40] 2026-01-09 05:49:38,668 | INFO     | . get job = 0 s
[2026-01-09 06:50:40] 2026-01-09 05:49:38,668 | INFO     | . initial setup = 2 s
[2026-01-09 06:50:40] 2026-01-09 05:49:38,669 | INFO     | . payload setup = 9 s
[2026-01-09 06:50:40] 2026-01-09 05:49:38,669 | INFO     | . stage-in = 0 s
[2026-01-09 06:50:40] 2026-01-09 05:49:38,669 | INFO     | . payload execution = 9942 s
[2026-01-09 06:50:40] 2026-01-09 05:49:38,669 | INFO     | . stage-out = 0 s
[2026-01-09 06:50:40] 2026-01-09 05:49:38,669 | INFO     | . log creation = 0 s
[2026-01-09 06:50:40] 2026-01-09 05:49:38,669 | INFO     | ..............................
[2026-01-09 06:50:40] 2026-01-09 05:49:38,782 | INFO     | 
[2026-01-09 06:50:40] 2026-01-09 05:49:38,782 | INFO     | job summary report
[2026-01-09 06:50:40] 2026-01-09 05:49:38,782 | INFO     | --------------------------------------------------
[2026-01-09 06:50:40] 2026-01-09 05:49:38,782 | INFO     | PanDA job id: 6963151818
[2026-01-09 06:50:40] 2026-01-09 05:49:38,782 | INFO     | task id: 47898826
[2026-01-09 06:50:40] 2026-01-09 05:49:38,783 | INFO     | errors: (none)
[2026-01-09 06:50:40] 2026-01-09 05:49:38,783 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 06:50:40] 2026-01-09 05:49:38,783 | INFO     | pilot state: finished 
[2026-01-09 06:50:40] 2026-01-09 05:49:38,783 | INFO     | transexitcode: 0
[2026-01-09 06:50:40] 2026-01-09 05:49:38,783 | INFO     | exeerrorcode: 0
[2026-01-09 06:50:40] 2026-01-09 05:49:38,783 | INFO     | exeerrordiag: 
[2026-01-09 06:50:40] 2026-01-09 05:49:38,783 | INFO     | exitcode: 0
[2026-01-09 06:50:40] 2026-01-09 05:49:38,784 | INFO     | exitmsg: OK
[2026-01-09 06:50:40] 2026-01-09 05:49:38,784 | INFO     | cpuconsumptiontime: 74989 s
[2026-01-09 06:50:40] 2026-01-09 05:49:38,784 | INFO     | nevents: 400
[2026-01-09 06:50:40] 2026-01-09 05:49:38,784 | INFO     | neventsw: 0
[2026-01-09 06:50:40] 2026-01-09 05:49:38,784 | INFO     | pid: 28165
[2026-01-09 06:50:40] 2026-01-09 05:49:38,784 | INFO     | pgrp: 28165
[2026-01-09 06:50:40] 2026-01-09 05:49:38,784 | INFO     | corecount: 8
[2026-01-09 06:50:40] 2026-01-09 05:49:38,784 | INFO     | event service: False
[2026-01-09 06:50:40] 2026-01-09 05:49:38,784 | INFO     | sizes: {0: 2283972, 1: 2283972, 9: 2284262, 12: 2284290, 9955: 2312786, 9957: 2321786, 9958: 2321970, 9962: 2322228}
[2026-01-09 06:50:40] 2026-01-09 05:49:38,784 | INFO     | --------------------------------------------------
[2026-01-09 06:50:40] 2026-01-09 05:49:38,785 | INFO     | 
[2026-01-09 06:50:40] 2026-01-09 05:49:38,785 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2026-01-09 06:50:40] 2026-01-09 05:49:38,817 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,818 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,818 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,818 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,819 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,819 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,819 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,819 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,819 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,819 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,819 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,820 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,820 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,820 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,820 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,820 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,820 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,820 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 06:50:40] 2026-01-09 05:49:38,821 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,821 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 06:50:40] 2026-01-09 05:49:38,821 | INFO     | job 6963151818 has completed (purged errors)
[2026-01-09 06:50:40] 2026-01-09 05:49:38,821 | INFO     | overall cleanup function is called
[2026-01-09 06:50:40] 2026-01-09 05:49:38,870 | INFO     | PID=21684 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 06:50:40] 2026-01-09 05:49:39,831 | INFO     | --- collectZombieJob: --- 10, [28165]
[2026-01-09 06:50:40] 2026-01-09 05:49:39,831 | INFO     | zombie collector waiting for pid 28165
[2026-01-09 06:50:40] 2026-01-09 05:49:39,831 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 06:50:40] 2026-01-09 05:49:39,832 | INFO     | collected zombie processes
[2026-01-09 06:50:40] 2026-01-09 05:49:39,832 | INFO     | will attempt to kill all subprocesses of pid=28165
[2026-01-09 06:50:40] 2026-01-09 05:49:39,894 | INFO     | process IDs to be killed: [28165] (in reverse order)
[2026-01-09 06:50:40] 2026-01-09 05:49:39,938 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 06:50:40] 2026-01-09 05:49:39,939 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 06:50:40] 2026-01-09 05:49:39,941 | INFO     | did not find any defunct processes belonging to 28165
[2026-01-09 06:50:40] 2026-01-09 05:49:39,942 | INFO     | did not find any defunct processes belonging to 28165
[2026-01-09 06:50:40] 2026-01-09 05:49:39,943 | INFO     | ready for new job
[2026-01-09 06:50:40] 2026-01-09 05:49:39,943 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 06:50:40] 2026-01-09 05:49:39,944 | INFO     | ***************************************
[2026-01-09 06:50:40] 2026-01-09 05:49:39,945 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 06:50:40] 2026-01-09 05:49:39,945 | INFO     | ***************************************
[2026-01-09 06:50:40] 2026-01-09 05:49:39,945 | INFO     | 
[2026-01-09 06:50:40] 2026-01-09 05:49:39,945 | INFO     | pilot is running in a VM
[2026-01-09 06:50:40] 2026-01-09 05:49:39,946 | INFO     | architecture information:
[2026-01-09 06:50:40] 2026-01-09 05:49:39,946 | INFO     | executing command: cat /etc/os-release
[2026-01-09 06:50:40] 2026-01-09 05:49:39,963 | INFO     | cat /etc/os-release:
[2026-01-09 06:50:40] NAME="CentOS Linux"
[2026-01-09 06:50:40] VERSION="7 (Core)"
[2026-01-09 06:50:40] ID="centos"
[2026-01-09 06:50:40] ID_LIKE="rhel fedora"
[2026-01-09 06:50:40] VERSION_ID="7"
[2026-01-09 06:50:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 06:50:40] ANSI_COLOR="0;31"
[2026-01-09 06:50:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 06:50:40] HOME_URL="https://www.centos.org/"
[2026-01-09 06:50:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 06:50:40] 
[2026-01-09 06:50:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 06:50:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 06:50:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 06:50:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 06:50:40] 
[2026-01-09 06:50:40] 2026-01-09 05:49:39,964 | INFO     | ***************************************
[2026-01-09 06:50:40] 2026-01-09 05:49:40,467 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2026-01-09 06:50:40] 2026-01-09 05:49:40,493 | INFO     | sufficient remaining disk space (498272829440 B)
[2026-01-09 06:50:40] 2026-01-09 05:49:40,493 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 06:50:40] 2026-01-09 05:49:40,493 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 06:50:40] 2026-01-09 05:49:40,493 | INFO     | update_server=False
[2026-01-09 06:50:40] 2026-01-09 05:49:40,493 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 06:50:40] 2026-01-09 05:49:40,494 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 06:50:40] 2026-01-09 05:49:40,494 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 06:50:40] 2026-01-09 05:49:41,005 | INFO     | all data control threads have been joined
[2026-01-09 06:50:40] 2026-01-09 05:49:41,011 | INFO     | all payload control threads have been joined
[2026-01-09 06:50:40] 2026-01-09 05:49:41,376 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 06:50:40] 2026-01-09 05:49:41,376 | INFO     | aborting loop
[2026-01-09 06:50:40] 2026-01-09 05:49:41,499 | INFO     | [job] retrieve thread has finished
[2026-01-09 06:50:40] 2026-01-09 05:49:41,500 | INFO     | [job] queue monitor thread has finished
[2026-01-09 06:50:40] 2026-01-09 05:49:41,581 | INFO     | [job] validate thread has finished
[2026-01-09 06:50:40] 2026-01-09 05:49:41,725 | INFO     | [data] copytool_in thread has finished
[2026-01-09 06:50:40] 2026-01-09 05:49:41,806 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 06:50:40] 2026-01-09 05:49:41,821 | INFO     | all job control threads have been joined
[2026-01-09 06:50:40] 2026-01-09 05:49:42,010 | INFO     | [data] control thread has finished
[2026-01-09 06:50:40] 2026-01-09 05:49:42,016 | INFO     | [payload] control thread has finished
[2026-01-09 06:50:40] 2026-01-09 05:49:42,216 | INFO     | [payload] validate_post thread has finished
[2026-01-09 06:50:40] 2026-01-09 05:49:42,382 | INFO     | [job] job monitor thread has finished
[2026-01-09 06:50:40] 2026-01-09 05:49:42,448 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 06:50:40] 2026-01-09 05:49:42,476 | INFO     | [payload] failed_post thread has finished
[2026-01-09 06:50:40] 2026-01-09 05:49:42,765 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 06:50:40] 2026-01-09 05:49:42,827 | INFO     | [job] control thread has finished
[2026-01-09 06:50:40] 2026-01-09 05:49:42,907 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 06:50:40] 2026-01-09 05:49:43,812 | INFO     | [data] copytool_out thread has finished
[2026-01-09 06:50:40] 2026-01-09 05:49:44,500 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 06:50:40] 2026-01-09 05:49:50,846 | INFO     | job.realtimelogging is not enabled
[2026-01-09 06:50:40] 2026-01-09 05:49:51,852 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 06:50:40] 2026-01-09 05:50:10,958 | INFO     | PID=21684 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 06:50:40] 2026-01-09 05:50:10,958 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 06:50:40] 2026-01-09 05:50:10,958 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 06:50:40] 2026-01-09 05:50:10,958 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 06:50:40] 2026-01-09 05:50:34,000 | INFO     | [monitor] cgroup control has ended
[2026-01-09 06:50:40] 2026-01-09 05:50:35,448 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140529584449344)>', '<ExcThread(monitor, started 140528838502144)>']
[2026-01-09 06:50:40] 2026-01-09 05:50:36,087 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 06:50:40] 2026-01-09 05:50:36,088 | INFO     | [monitor] control thread has ended
[2026-01-09 06:50:40] 2026-01-09 05:50:40,457 | INFO     | all workflow threads have been joined
[2026-01-09 06:50:40] 2026-01-09 05:50:40,457 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 06:50:40] 2026-01-09 05:50:40,458 | INFO     | traces error code: 0
[2026-01-09 06:50:40] 2026-01-09 05:50:40,458 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 06:50:40] 2026-01-09 05:50:40,605 [wrapper] ==== pilot stdout END ====
[2026-01-09 06:50:40] 2026-01-09 05:50:40,609 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 06:50:40] 2026-01-09 05:50:40,619 [wrapper] pilotpid: 21684
[2026-01-09 06:50:40] 2026-01-09 05:50:40,622 [wrapper] Pilot exit status: 0
[2026-01-09 06:50:40] 2026-01-09 05:50:40,640 [wrapper] pandaids: 6963151818
[2026-01-09 06:50:40] 2026-01-09 05:50:40,674 [wrapper] cleanup supervisor_pilot 15064 21685
[2026-01-09 06:50:40] 2026-01-09 05:50:40,678 [wrapper] Test setup, not cleaning
[2026-01-09 06:50:40] 2026-01-09 05:50:40,691 [wrapper] apfmon messages muted
[2026-01-09 06:50:40] 2026-01-09 05:50:40,695 [wrapper] ==== wrapper stdout END ====
[2026-01-09 06:50:40] 2026-01-09 05:50:40,698 [wrapper] ==== wrapper stderr END ====
[2026-01-09 06:50:40]  *** Error codes and diagnostics ***
[2026-01-09 06:50:40]     "exeErrorCode": 0,
[2026-01-09 06:50:40]     "exeErrorDiag": "",
[2026-01-09 06:50:40]     "pilotErrorCode": 0,
[2026-01-09 06:50:40]     "pilotErrorDiag": "",
[2026-01-09 06:50:40]  *** Listing of results directory ***
[2026-01-09 06:50:40] total 445664
[2026-01-09 06:50:40] -rw-r--r--. 1 boinc boinc      5112 Jan  8 17:02 queuedata.json
[2026-01-09 06:50:40] -rw-r--r--. 1 boinc boinc    579449 Jan  8 17:02 pilot3.tar.gz
[2026-01-09 06:50:40] -rwx------. 1 boinc boinc     36322 Jan  8 17:02 runpilot2-wrapper.sh
[2026-01-09 06:50:40] -rw-r--r--. 1 boinc boinc       100 Jan  9 04:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 06:50:40] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 04:02 run_atlas
[2026-01-09 06:50:40] -rw-r--r--. 1 boinc boinc       105 Jan  9 04:02 job.xml
[2026-01-09 06:50:40] -rw-r--r--. 1 boinc boinc      6390 Jan  9 04:02 init_data.xml
[2026-01-09 06:50:40] -rw-r--r--. 2 boinc boinc 226275280 Jan  9 04:02 EVNT.47898824._001126.pool.root.1
[2026-01-09 06:50:40] -rw-r--r--. 2 boinc boinc     15847 Jan  9 04:02 start_atlas.sh
[2026-01-09 06:50:40] drwxrwx--x. 2 boinc boinc        68 Jan  9 04:02 shared
[2026-01-09 06:50:40] -rw-r--r--. 2 boinc boinc    592395 Jan  9 04:02 input.tar.gz
[2026-01-09 06:50:40] -rw-r--r--. 1 boinc boinc         0 Jan  9 04:02 boinc_lockfile
[2026-01-09 06:50:40] -rw-r--r--. 1 boinc boinc      2520 Jan  9 04:02 pandaJob.out
[2026-01-09 06:50:40] -rw-------. 1 boinc boinc    989763 Jan  9 04:03 agis_schedconf.cvmfs.json
[2026-01-09 06:50:40] -rw-------. 1 boinc boinc   1516240 Jan  9 04:03 agis_ddmendpoints.agis.ALL.json
[2026-01-09 06:50:40] drwx------. 5 boinc boinc      4096 Jan  9 04:03 pilot3
[2026-01-09 06:50:40] -rw-------. 1 boinc boinc 222678906 Jan  9 06:48 HITS.47898826._028769.pool.root.1
[2026-01-09 06:50:40] -rw-r--r--. 1 boinc boinc       529 Jan  9 06:49 boinc_task_state.xml
[2026-01-09 06:50:40] -rw-------. 1 boinc boinc        95 Jan  9 06:49 pilot_heartbeat.json
[2026-01-09 06:50:40] -rw-------. 1 boinc boinc      1022 Jan  9 06:49 memory_monitor_summary.json
[2026-01-09 06:50:40] -rw-------. 1 boinc boinc    407409 Jan  9 06:49 log.47898826._028769.job.log.tgz.1
[2026-01-09 06:50:40] -rw-------. 1 boinc boinc      7775 Jan  9 06:49 heartbeat.json
[2026-01-09 06:50:40] -rw-r--r--. 1 boinc boinc      8192 Jan  9 06:50 boinc_mmap_file
[2026-01-09 06:50:40] -rw-r--r--. 1 boinc boinc        28 Jan  9 06:50 wrapper_checkpoint.txt
[2026-01-09 06:50:40] -rw-------. 1 boinc boinc      4882 Jan  9 06:50 pilotlog.txt
[2026-01-09 06:50:40] -rw-------. 1 boinc boinc   1348641 Jan  9 06:50 log.47898826._028769.job.log.1
[2026-01-09 06:50:40] -rw-------. 1 boinc boinc       357 Jan  9 06:50 output.list
[2026-01-09 06:50:40] -rw-r--r--. 1 boinc boinc       620 Jan  9 06:50 runtime_log
[2026-01-09 06:50:40] -rw-------. 1 boinc boinc   1771520 Jan  9 06:50 result.tar.gz
[2026-01-09 06:50:40] -rw-r--r--. 1 boinc boinc      8833 Jan  9 06:50 runtime_log.err
[2026-01-09 06:50:40] -rw-------. 1 boinc boinc       656 Jan  9 06:50 GsJKDmNe7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4skKDmjIgYVm.diag
[2026-01-09 06:50:40] -rw-r--r--. 1 boinc boinc     20715 Jan  9 06:50 stderr.txt
[2026-01-09 06:50:40] HITS file was successfully produced:
[2026-01-09 06:50:40] -rw-------. 1 boinc boinc 222678906 Jan  9 06:48 shared/HITS.pool.root.1
[2026-01-09 06:50:40]  *** Contents of shared directory: ***
[2026-01-09 06:50:40] total 440760
[2026-01-09 06:50:40] -rw-r--r--. 2 boinc boinc 226275280 Jan  9 04:02 ATLAS.root_0
[2026-01-09 06:50:40] -rw-r--r--. 2 boinc boinc     15847 Jan  9 04:02 start_atlas.sh
[2026-01-09 06:50:40] -rw-r--r--. 2 boinc boinc    592395 Jan  9 04:02 input.tar.gz
[2026-01-09 06:50:40] -rw-------. 1 boinc boinc 222678906 Jan  9 06:48 HITS.pool.root.1
[2026-01-09 06:50:40] -rw-------. 1 boinc boinc   1771520 Jan  9 06:50 result.tar.gz
06:50:42 (17972): run_atlas exited; CPU time 75050.378551
06:50:42 (17972): called boinc_finish(0)

</stderr_txt>
]]>

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