Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:25:01 (1048541): wrapper (7.7.26015): starting
06:25:01 (1048541): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 06:25:01] Arguments: --nthreads 4
[2026-01-10 06:25:01] Threads: 4
[2026-01-10 06:25:01] Checking for CVMFS
[2026-01-10 06:25:01] No cvmfs_config command found, will try listing directly
[2026-01-10 06:25:01] CVMFS is ok
[2026-01-10 06:25:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 06:25:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 06:25:01] Further information can be found at the LHC@home message board.
[2026-01-10 06:25:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 06:25:01] Checking for apptainer binary...
[2026-01-10 06:25:01] which: no apptainer in ((null))
[2026-01-10 06:25:01] apptainer is not installed, using version from CVMFS
[2026-01-10 06:25:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 06:25:01] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2026-01-10 06:25:01] apptainer works
[2026-01-10 06:25:01] Set ATHENA_PROC_NUMBER=4
[2026-01-10 06:25:01] Set ATHENA_CORE_NUMBER=4
[2026-01-10 06:25:01] Starting ATLAS job with PandaID=6963151486
[2026-01-10 06:25:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 10:23:11]  *** The last 200 lines of the pilot log: ***
[2026-01-10 10:23:11] 2026-01-10 09:20:36,512 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:23:11] 2026-01-10 09:20:36,877 | INFO     | time since job start (14120s) is within the limit (349056.0s)
[2026-01-10 10:23:11] 2026-01-10 09:20:38,883 | INFO     | time since job start (14122s) is within the limit (349056.0s)
[2026-01-10 10:23:11] 2026-01-10 09:20:39,015 | INFO     | monitor loop #960: job 0:6963151486 is in state 'finished'
[2026-01-10 10:23:11] 2026-01-10 09:20:39,015 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 10:23:11] 2026-01-10 09:20:40,763 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 10:23:11] 2026-01-10 09:20:40,784 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2714.2493671875
[2026-01-10 10:23:11] 2026-01-10 09:20:40,809 | INFO     | using path: /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6963151486/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 10:23:11] 2026-01-10 09:20:40,810 | INFO     | extracted standard info from prmon json
[2026-01-10 10:23:11] 2026-01-10 09:20:40,810 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 10:23:11] 2026-01-10 09:20:40,810 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 10:23:11] 2026-01-10 09:20:40,810 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 10:23:11] 2026-01-10 09:20:40,810 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 10:23:11] 2026-01-10 09:20:40,815 | INFO     | fitting pss+swap vs Time
[2026-01-10 10:23:11] 2026-01-10 09:20:40,815 | INFO     | sum of square deviations: 3822136780.0
[2026-01-10 10:23:11] 2026-01-10 09:20:40,817 | INFO     | sum of deviations: -58076275855.99999
[2026-01-10 10:23:11] 2026-01-10 09:20:40,817 | INFO     | mean x: 1768029766.0
[2026-01-10 10:23:11] 2026-01-10 09:20:40,817 | INFO     | mean y: 2391718.8051948054
[2026-01-10 10:23:11] 2026-01-10 09:20:40,817 | INFO     | intersect: 26867098641.155346
[2026-01-10 10:23:11] 2026-01-10 09:20:40,818 | INFO     | chi2: 1.6524918067976275
[2026-01-10 10:23:11] 2026-01-10 09:20:40,818 | INFO     | sum of square deviations: 3579276412.5
[2026-01-10 10:23:11] 2026-01-10 09:20:40,820 | INFO     | sum of deviations: -56649524469.000015
[2026-01-10 10:23:11] 2026-01-10 09:20:40,820 | INFO     | mean x: 1768029613.5
[2026-01-10 10:23:11] 2026-01-10 09:20:40,820 | INFO     | mean y: 2392615.663716814
[2026-01-10 10:23:11] 2026-01-10 09:20:40,820 | INFO     | intersect: 27985153740.817497
[2026-01-10 10:23:11] 2026-01-10 09:20:40,821 | INFO     | chi2: 1.6452930479057548
[2026-01-10 10:23:11] 2026-01-10 09:20:40,821 | INFO     | current chi2=1.6452930479057548 (change=0.43563053458178574 %)
[2026-01-10 10:23:11] 2026-01-10 09:20:40,821 | INFO     | right removable region: 225
[2026-01-10 10:23:11] 2026-01-10 09:20:40,821 | INFO     | sum of square deviations: 3579276412.5
[2026-01-10 10:23:11] 2026-01-10 09:20:40,823 | INFO     | sum of deviations: -80319776894.0
[2026-01-10 10:23:11] 2026-01-10 09:20:40,823 | INFO     | mean x: 1768029918.5
[2026-01-10 10:23:11] 2026-01-10 09:20:40,823 | INFO     | mean y: 2405452.203539823
[2026-01-10 10:23:11] 2026-01-10 09:20:40,823 | INFO     | intersect: 39677399006.73863
[2026-01-10 10:23:11] 2026-01-10 09:20:40,823 | INFO     | chi2: 0.43598851265729033
[2026-01-10 10:23:11] 2026-01-10 09:20:40,824 | INFO     | current chi2=0.43598851265729033 (change=73.61629807398594 %)
[2026-01-10 10:23:11] 2026-01-10 09:20:40,824 | INFO     | sum of square deviations: 3346927870.0
[2026-01-10 10:23:11] 2026-01-10 09:20:40,826 | INFO     | sum of deviations: -70820623630.00003
[2026-01-10 10:23:11] 2026-01-10 09:20:40,826 | INFO     | mean x: 1768030071.0
[2026-01-10 10:23:11] 2026-01-10 09:20:40,826 | INFO     | mean y: 2399203.669683258
[2026-01-10 10:23:11] 2026-01-10 09:20:40,826 | INFO     | intersect: 37413719999.42177
[2026-01-10 10:23:11] 2026-01-10 09:20:40,826 | INFO     | chi2: 0.42085689890501704
[2026-01-10 10:23:11] 2026-01-10 09:20:40,826 | INFO     | current chi2=0.42085689890501704 (change=3.470645054395624 %)
[2026-01-10 10:23:11] 2026-01-10 09:20:40,826 | INFO     | left removable region: 20
[2026-01-10 10:23:11] 2026-01-10 09:20:40,827 | INFO     | sum of square deviations: 2671343110.0
[2026-01-10 10:23:11] 2026-01-10 09:20:40,828 | INFO     | sum of deviations: -46310415418.00001
[2026-01-10 10:23:11] 2026-01-10 09:20:40,828 | INFO     | mean x: 1768030193.0
[2026-01-10 10:23:11] 2026-01-10 09:20:40,828 | INFO     | mean y: 2383719.580487805
[2026-01-10 10:23:11] 2026-01-10 09:20:40,828 | INFO     | intersect: 30652962599.878918
[2026-01-10 10:23:11] 2026-01-10 09:20:40,829 | INFO     | chi2: 0.3341568840556646
[2026-01-10 10:23:11] 2026-01-10 09:20:40,829 | INFO     | current memory leak: -17.34 B/s (using 205 data points, chi2=0.33)
[2026-01-10 10:23:11] 2026-01-10 09:20:40,829 | INFO     | could have reported an average CPU frequency of 2700 MHz (11 samples)
[2026-01-10 10:23:11] 2026-01-10 09:20:40,829 | INFO     | ..............................
[2026-01-10 10:23:11] 2026-01-10 09:20:40,830 | INFO     | . Timing measurements:
[2026-01-10 10:23:11] 2026-01-10 09:20:40,830 | INFO     | . get job = 0 s
[2026-01-10 10:23:11] 2026-01-10 09:20:40,830 | INFO     | . initial setup = 1 s
[2026-01-10 10:23:11] 2026-01-10 09:20:40,830 | INFO     | . payload setup = 8 s
[2026-01-10 10:23:11] 2026-01-10 09:20:40,830 | INFO     | . stage-in = 0 s
[2026-01-10 10:23:11] 2026-01-10 09:20:40,830 | INFO     | . payload execution = 14078 s
[2026-01-10 10:23:11] 2026-01-10 09:20:40,830 | INFO     | . stage-out = 1 s
[2026-01-10 10:23:11] 2026-01-10 09:20:40,830 | INFO     | . log creation = 0 s
[2026-01-10 10:23:11] 2026-01-10 09:20:40,830 | INFO     | ..............................
[2026-01-10 10:23:11] 2026-01-10 09:20:40,893 | INFO     | time since job start (14124s) is within the limit (349056.0s)
[2026-01-10 10:23:11] 2026-01-10 09:20:40,931 | INFO     | 
[2026-01-10 10:23:11] 2026-01-10 09:20:40,932 | INFO     | job summary report
[2026-01-10 10:23:11] 2026-01-10 09:20:40,932 | INFO     | --------------------------------------------------
[2026-01-10 10:23:11] 2026-01-10 09:20:40,932 | INFO     | PanDA job id: 6963151486
[2026-01-10 10:23:11] 2026-01-10 09:20:40,932 | INFO     | task id: 47898826
[2026-01-10 10:23:11] 2026-01-10 09:20:40,932 | INFO     | errors: (none)
[2026-01-10 10:23:11] 2026-01-10 09:20:40,932 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 10:23:11] 2026-01-10 09:20:40,932 | INFO     | pilot state: finished 
[2026-01-10 10:23:11] 2026-01-10 09:20:40,932 | INFO     | transexitcode: 0
[2026-01-10 10:23:11] 2026-01-10 09:20:40,932 | INFO     | exeerrorcode: 0
[2026-01-10 10:23:11] 2026-01-10 09:20:40,932 | INFO     | exeerrordiag: 
[2026-01-10 10:23:11] 2026-01-10 09:20:40,932 | INFO     | exitcode: 0
[2026-01-10 10:23:11] 2026-01-10 09:20:40,932 | INFO     | exitmsg: OK
[2026-01-10 10:23:11] 2026-01-10 09:20:40,932 | INFO     | cpuconsumptiontime: 54052 s
[2026-01-10 10:23:11] 2026-01-10 09:20:40,933 | INFO     | nevents: 400
[2026-01-10 10:23:11] 2026-01-10 09:20:40,933 | INFO     | neventsw: 0
[2026-01-10 10:23:11] 2026-01-10 09:20:40,933 | INFO     | pid: 1061052
[2026-01-10 10:23:11] 2026-01-10 09:20:40,933 | INFO     | pgrp: 1061052
[2026-01-10 10:23:11] 2026-01-10 09:20:40,933 | INFO     | corecount: 4
[2026-01-10 10:23:11] 2026-01-10 09:20:40,933 | INFO     | event service: False
[2026-01-10 10:23:11] 2026-01-10 09:20:40,933 | INFO     | sizes: {0: 2283141, 1: 2284009, 8: 2284271, 12: 2284299, 14091: 2315438, 14092: 2315437, 14093: 2324643, 14096: 2324699, 14107: 2324893}
[2026-01-10 10:23:11] 2026-01-10 09:20:40,933 | INFO     | --------------------------------------------------
[2026-01-10 10:23:11] 2026-01-10 09:20:40,933 | INFO     | 
[2026-01-10 10:23:11] 2026-01-10 09:20:40,933 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2026-01-10 10:23:11] 2026-01-10 09:20:40,962 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,963 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,963 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,963 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,963 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,963 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,963 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,963 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,963 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,963 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,964 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,964 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,964 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,964 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,964 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,964 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,964 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,964 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 10:23:11] 2026-01-10 09:20:40,964 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,964 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 10:23:11] 2026-01-10 09:20:40,965 | INFO     | job 6963151486 has completed (purged errors)
[2026-01-10 10:23:11] 2026-01-10 09:20:40,965 | INFO     | overall cleanup function is called
[2026-01-10 10:23:11] 2026-01-10 09:20:41,973 | INFO     | --- collectZombieJob: --- 10, [1061052]
[2026-01-10 10:23:11] 2026-01-10 09:20:41,973 | INFO     | zombie collector waiting for pid 1061052
[2026-01-10 10:23:11] 2026-01-10 09:20:41,973 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 10:23:11] 2026-01-10 09:20:41,974 | INFO     | collected zombie processes
[2026-01-10 10:23:11] 2026-01-10 09:20:41,974 | INFO     | will attempt to kill all subprocesses of pid=1061052
[2026-01-10 10:23:11] 2026-01-10 09:20:42,805 | INFO     | process IDs to be killed: [1061052] (in reverse order)
[2026-01-10 10:23:11] 2026-01-10 09:20:43,062 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 10:23:11] 2026-01-10 09:20:43,063 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 10:23:11] 2026-01-10 09:20:43,097 | INFO     | did not find any defunct processes belonging to 1061052
[2026-01-10 10:23:11] 2026-01-10 09:20:43,131 | INFO     | did not find any defunct processes belonging to 1061052
[2026-01-10 10:23:11] 2026-01-10 09:20:43,131 | INFO     | ready for new job
[2026-01-10 10:23:11] 2026-01-10 09:20:43,131 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 10:23:11] 2026-01-10 09:20:43,134 | INFO     | ***************************************
[2026-01-10 10:23:11] 2026-01-10 09:20:43,134 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 10:23:11] 2026-01-10 09:20:43,134 | INFO     | ***************************************
[2026-01-10 10:23:11] 2026-01-10 09:20:43,135 | INFO     | 
[2026-01-10 10:23:11] 2026-01-10 09:20:43,143 | INFO     | architecture information:
[2026-01-10 10:23:11] 2026-01-10 09:20:43,143 | INFO     | executing command: cat /etc/os-release
[2026-01-10 10:23:11] 2026-01-10 09:20:43,167 | INFO     | cat /etc/os-release:
[2026-01-10 10:23:11] NAME="CentOS Linux"
[2026-01-10 10:23:11] VERSION="7 (Core)"
[2026-01-10 10:23:11] ID="centos"
[2026-01-10 10:23:11] ID_LIKE="rhel fedora"
[2026-01-10 10:23:11] VERSION_ID="7"
[2026-01-10 10:23:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 10:23:11] ANSI_COLOR="0;31"
[2026-01-10 10:23:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 10:23:11] HOME_URL="https://www.centos.org/"
[2026-01-10 10:23:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 10:23:11] 
[2026-01-10 10:23:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 10:23:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 10:23:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 10:23:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 10:23:11] 
[2026-01-10 10:23:11] 2026-01-10 09:20:43,168 | INFO     | ***************************************
[2026-01-10 10:23:11] 2026-01-10 09:20:43,670 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2026-01-10 10:23:11] 2026-01-10 09:20:43,696 | INFO     | sufficient remaining disk space (3297977040896 B)
[2026-01-10 10:23:11] 2026-01-10 09:20:43,697 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 10:23:11] 2026-01-10 09:20:43,697 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 10:23:11] 2026-01-10 09:20:43,697 | INFO     | update_server=False
[2026-01-10 10:23:11] 2026-01-10 09:20:43,697 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 10:23:11] 2026-01-10 09:20:43,759 | INFO     | all job control threads have been joined
[2026-01-10 10:23:11] 2026-01-10 09:20:44,025 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 10:23:11] 2026-01-10 09:20:44,026 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 10:23:11] 2026-01-10 09:20:44,026 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:23:11] 2026-01-10 09:20:44,026 | INFO     | will abort loop
[2026-01-10 10:23:11] 2026-01-10 09:20:44,055 | INFO     | all payload control threads have been joined
[2026-01-10 10:23:11] 2026-01-10 09:20:44,569 | INFO     | all data control threads have been joined
[2026-01-10 10:23:11] 2026-01-10 09:20:44,703 | INFO     | [job] retrieve thread has finished
[2026-01-10 10:23:11] 2026-01-10 09:20:44,764 | INFO     | [job] control thread has finished
[2026-01-10 10:23:11] 2026-01-10 09:20:44,855 | INFO     | [data] copytool_in thread has finished
[2026-01-10 10:23:11] 2026-01-10 09:20:44,890 | INFO     | [job] validate thread has finished
[2026-01-10 10:23:11] 2026-01-10 09:20:44,945 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 10:23:11] 2026-01-10 09:20:45,022 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 10:23:11] 2026-01-10 09:20:45,027 | INFO     | [job] job monitor thread has finished
[2026-01-10 10:23:11] 2026-01-10 09:20:45,061 | INFO     | [payload] control thread has finished
[2026-01-10 10:23:11] 2026-01-10 09:20:45,082 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 10:23:11] 2026-01-10 09:20:45,190 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 10:23:11] 2026-01-10 09:20:45,575 | INFO     | [data] control thread has finished
[2026-01-10 10:23:11] 2026-01-10 09:20:45,690 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 10:23:11] 2026-01-10 09:20:45,941 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 10:23:11] 2026-01-10 09:20:46,014 | INFO     | [payload] validate_post thread has finished
[2026-01-10 10:23:11] 2026-01-10 09:20:46,300 | INFO     | [payload] failed_post thread has finished
[2026-01-10 10:23:11] 2026-01-10 09:20:46,946 | INFO     | [job] queue monitor thread has finished
[2026-01-10 10:23:11] 2026-01-10 09:20:46,951 | INFO     | [data] copytool_out thread has finished
[2026-01-10 10:23:11] 2026-01-10 09:20:49,088 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 10:23:11] 2026-01-10 09:20:54,462 | INFO     | job.realtimelogging is not enabled
[2026-01-10 10:23:11] 2026-01-10 09:20:55,467 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 10:23:11] 2026-01-10 09:21:14,954 | INFO     | PID=1053151 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 10:23:11] 2026-01-10 09:21:14,954 | INFO     | .. there are 3 such processes running
[2026-01-10 10:23:11] 2026-01-10 09:21:14,955 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 10:23:11] 2026-01-10 09:21:14,956 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 10:23:11] 2026-01-10 09:21:14,956 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 10:23:11] 2026-01-10 09:21:38,687 | INFO     | [monitor] cgroup control has ended
[2026-01-10 10:23:11] 2026-01-10 09:21:39,200 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23078765299520)>', '<ExcThread(monitor, started 23078455183104)>']
[2026-01-10 10:23:11] 2026-01-10 09:21:40,082 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 10:23:11] 2026-01-10 09:21:40,085 | INFO     | [monitor] control thread has ended
[2026-01-10 10:23:11] 2026-01-10 09:21:44,226 | INFO     | all workflow threads have been joined
[2026-01-10 10:23:11] 2026-01-10 09:21:44,226 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 10:23:11] 2026-01-10 09:21:44,227 | INFO     | traces error code: 0
[2026-01-10 10:23:11] 2026-01-10 09:21:44,227 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 10:23:11] 2026-01-10 09:21:44,399 [wrapper] ==== pilot stdout END ====
[2026-01-10 10:23:11] 2026-01-10 09:21:44,404 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 10:23:11] 2026-01-10 09:21:44,407 [wrapper] pilotpid: 1053151
[2026-01-10 10:23:11] 2026-01-10 09:21:44,411 [wrapper] Pilot exit status: 0
[2026-01-10 10:23:11] 2026-01-10 09:21:44,428 [wrapper] pandaids: 6963151486
[2026-01-10 10:23:11] 2026-01-10 09:21:44,612 [wrapper] cleanup supervisor_pilot 1352318 1053152
[2026-01-10 10:23:11] 2026-01-10 09:21:44,616 [wrapper] Test setup, not cleaning
[2026-01-10 10:23:11] 2026-01-10 09:21:44,620 [wrapper] apfmon messages muted
[2026-01-10 10:23:11] 2026-01-10 09:21:44,623 [wrapper] ==== wrapper stdout END ====
[2026-01-10 10:23:11] 2026-01-10 09:21:44,626 [wrapper] ==== wrapper stderr END ====
[2026-01-10 10:23:11]  *** Error codes and diagnostics ***
[2026-01-10 10:23:11]     "exeErrorCode": 0,
[2026-01-10 10:23:11]     "exeErrorDiag": "",
[2026-01-10 10:23:11]     "pilotErrorCode": 0,
[2026-01-10 10:23:11]     "pilotErrorDiag": "",
[2026-01-10 10:23:11]  *** Listing of results directory ***
[2026-01-10 10:23:11] total 445680
[2026-01-10 10:23:11] -rw-r--r-- 1 boinc boinc      5112 Jan  8 17:02 queuedata.json
[2026-01-10 10:23:11] -rw-r--r-- 1 boinc boinc    579449 Jan  8 17:02 pilot3.tar.gz
[2026-01-10 10:23:11] -rwx------ 1 boinc boinc     36322 Jan  8 17:02 runpilot2-wrapper.sh
[2026-01-10 10:23:11] -rw-r--r-- 1 boinc boinc       100 Jan 10 06:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 10:23:11] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 06:24 run_atlas
[2026-01-10 10:23:11] -rw-r--r-- 1 boinc boinc       105 Jan 10 06:24 job.xml
[2026-01-10 10:23:11] -rw-r--r-- 2 boinc boinc 226519136 Jan 10 06:25 EVNT.47898824._001093.pool.root.1
[2026-01-10 10:23:11] -rw-r--r-- 1 boinc boinc      6692 Jan 10 06:25 init_data.xml
[2026-01-10 10:23:11] -rw-r--r-- 2 boinc boinc     15847 Jan 10 06:25 start_atlas.sh
[2026-01-10 10:23:11] drwxrwx--x 2 boinc boinc      4096 Jan 10 06:25 shared
[2026-01-10 10:23:11] -rw-r--r-- 2 boinc boinc    592394 Jan 10 06:25 input.tar.gz
[2026-01-10 10:23:11] -rw-r--r-- 1 boinc boinc         0 Jan 10 06:25 boinc_lockfile
[2026-01-10 10:23:11] -rw-r--r-- 1 boinc boinc      2519 Jan 10 06:25 pandaJob.out
[2026-01-10 10:23:11] -rw------- 1 boinc boinc    989374 Jan 10 06:25 agis_schedconf.cvmfs.json
[2026-01-10 10:23:11] drwx------ 5 boinc boinc      4096 Jan 10 06:25 pilot3
[2026-01-10 10:23:11] -rw------- 1 boinc boinc 221268602 Jan 10 10:19 HITS.47898826._028524.pool.root.1
[2026-01-10 10:23:11] -rw-r--r-- 1 boinc boinc       528 Jan 10 10:20 boinc_task_state.xml
[2026-01-10 10:23:11] -rw------- 1 boinc boinc      1033 Jan 10 10:20 memory_monitor_summary.json
[2026-01-10 10:23:11] -rw------- 1 boinc boinc   1516240 Jan 10 10:20 agis_ddmendpoints.agis.ALL.json
[2026-01-10 10:23:11] -rw------- 1 boinc boinc    387734 Jan 10 10:20 log.47898826._028524.job.log.tgz.1
[2026-01-10 10:23:11] -rw------- 1 boinc boinc      7809 Jan 10 10:20 heartbeat.json
[2026-01-10 10:23:11] -rw------- 1 boinc boinc        95 Jan 10 10:21 pilot_heartbeat.json
[2026-01-10 10:23:11] -rw------- 1 boinc boinc      5093 Jan 10 10:21 pilotlog.txt
[2026-01-10 10:23:11] -rw------- 1 boinc boinc   1950372 Jan 10 10:21 log.47898826._028524.job.log.1
[2026-01-10 10:23:11] -rw------- 1 boinc boinc       357 Jan 10 10:21 output.list
[2026-01-10 10:23:11] -rw-r--r-- 1 boinc boinc       620 Jan 10 10:21 runtime_log
[2026-01-10 10:23:11] -rw------- 1 boinc boinc   2355200 Jan 10 10:21 result.tar.gz
[2026-01-10 10:23:11] -rw-r--r-- 1 boinc boinc      9223 Jan 10 10:21 runtime_log.err
[2026-01-10 10:23:11] -rw------- 1 boinc boinc       667 Jan 10 10:21 ZD1MDmKe7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnrkKDm9erwVn.diag
[2026-01-10 10:23:11] -rw-r--r-- 1 boinc boinc        26 Jan 10 10:23 wrapper_checkpoint.txt
[2026-01-10 10:23:11] -rw-r--r-- 1 boinc boinc      8192 Jan 10 10:23 boinc_mmap_file
[2026-01-10 10:23:11] -rw-r--r-- 1 boinc boinc     21108 Jan 10 10:23 stderr.txt
[2026-01-10 10:23:11] HITS file was successfully produced:
[2026-01-10 10:23:11] -rw------- 1 boinc boinc 221268602 Jan 10 10:19 shared/HITS.pool.root.1
[2026-01-10 10:23:11]  *** Contents of shared directory: ***
[2026-01-10 10:23:11] total 440200
[2026-01-10 10:23:11] -rw-r--r-- 2 boinc boinc 226519136 Jan 10 06:25 ATLAS.root_0
[2026-01-10 10:23:11] -rw-r--r-- 2 boinc boinc     15847 Jan 10 06:25 start_atlas.sh
[2026-01-10 10:23:11] -rw-r--r-- 2 boinc boinc    592394 Jan 10 06:25 input.tar.gz
[2026-01-10 10:23:11] -rw------- 1 boinc boinc 221268602 Jan 10 10:19 HITS.pool.root.1
[2026-01-10 10:23:11] -rw------- 1 boinc boinc   2355200 Jan 10 10:21 result.tar.gz
10:23:12 (1048541): run_atlas exited; CPU time 55055.708463
10:23:12 (1048541): called boinc_finish(0)

</stderr_txt>
]]>

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