Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:24:23 (522): wrapper (7.7.26015): starting
15:24:23 (522): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 15:24:23] Arguments: --nthreads 12
[2026-01-08 15:24:23] Threads: 12
[2026-01-08 15:24:23] Checking for CVMFS
[2026-01-08 15:24:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 15:24:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 15:24:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 15:24:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 15:24:24] 2.11.2.0 2933 350078 95448 154919 3 56 12218749 20275200 1 130560 2 147577898 99.943 21707318 17057 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 15:24:24] CVMFS is ok
[2026-01-08 15:24:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 15:24:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 15:24:24] Further information can be found at the LHC@home message board.
[2026-01-08 15:24:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 15:24:24] Checking for apptainer binary...
[2026-01-08 15:24:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 15:24:24] Running /usr/bin/apptainer --version
[2026-01-08 15:24:24] apptainer version 1.3.2-1.el7
[2026-01-08 15:24:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 15:24:25] c-205-15.aglt2.org
[2026-01-08 15:24:25] apptainer works
[2026-01-08 15:24:25] Set ATHENA_PROC_NUMBER=12
[2026-01-08 15:24:25] Set ATHENA_CORE_NUMBER=12
[2026-01-08 15:24:25] Starting ATLAS job with PandaID=6963078437
[2026-01-08 15:24:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:27:44 (1480): wrapper (7.7.26015): starting
16:27:44 (1480): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 16:27:44] Arguments: --nthreads 12
[2026-01-08 16:27:44] Threads: 12
[2026-01-08 16:27:44] This job has been restarted, cleaning up previous attempt
[2026-01-08 16:27:44] Checking for CVMFS
[2026-01-08 16:27:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 16:27:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 16:27:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 16:27:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 16:27:44] 2.11.2.0 2933 350141 96984 154920 0 11 12296210 20275201 1 130560 2 147644482 99.944 21708732 17057 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 16:27:44] CVMFS is ok
[2026-01-08 16:27:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 16:27:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 16:27:44] Further information can be found at the LHC@home message board.
[2026-01-08 16:27:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 16:27:44] Checking for apptainer binary...
[2026-01-08 16:27:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 16:27:44] Running /usr/bin/apptainer --version
[2026-01-08 16:27:44] apptainer version 1.3.2-1.el7
[2026-01-08 16:27:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 16:27:46] c-205-15.aglt2.org
[2026-01-08 16:27:46] apptainer works
[2026-01-08 16:27:46] Set ATHENA_PROC_NUMBER=12
[2026-01-08 16:27:46] Set ATHENA_CORE_NUMBER=12
[2026-01-08 16:27:46] Starting ATLAS job with PandaID=6963078437
[2026-01-08 16:27:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 18:09:15]  *** The last 200 lines of the pilot log: ***
[2026-01-08 18:09:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-08 18:09:15]  replicas=None
[2026-01-08 18:09:15]  scope=mc23_13p6TeV
[2026-01-08 18:09:15]  status=None
[2026-01-08 18:09:15]  status_code=0
[2026-01-08 18:09:15]  storage_token=
[2026-01-08 18:09:15]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6963078437/log.47898826._024596.job.log.tgz.1
[2026-01-08 18:09:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/5f/log.47898826._024596.job.log.tgz.1
[2026-01-08 18:09:15]  workdir=None
[2026-01-08 18:09:15] ]
[2026-01-08 18:09:15] 2026-01-08 23:08:24,058 | INFO     | transferring file log.47898826._024596.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963078437/log.47898826._024596.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-08 18:09:15] 2026-01-08 23:08:24,058 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963078437/log.47898826._024596.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._024596.job
[2026-01-08 18:09:15] 2026-01-08 23:08:24,079 | INFO     | adding to output.list: log.47898826._024596.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a3/5f/log.47898826._024596.job.log.tg
[2026-01-08 18:09:15] 2026-01-08 23:08:24,080 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-08 18:09:15] 2026-01-08 23:08:24,080 | INFO     | summary of transferred files:
[2026-01-08 18:09:15] 2026-01-08 23:08:24,081 | INFO     |  -- lfn=log.47898826._024596.job.log.tgz.1, status_code=0, status=transferred
[2026-01-08 18:09:15] 2026-01-08 23:08:24,081 | INFO     | stage-out finished correctly
[2026-01-08 18:09:15] 2026-01-08 23:08:24,163 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-08 18:09:15] 2026-01-08 23:08:25,785 | INFO     | time since job start (6025s) is within the limit (174528.0s)
[2026-01-08 18:09:15] 2026-01-08 23:08:26,340 | INFO     | monitor loop #445: job 0:6963078437 is in state 'finished'
[2026-01-08 18:09:15] 2026-01-08 23:08:26,340 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 18:09:15] 2026-01-08 23:08:27,076 | INFO     | job 6963078437 has state=finished
[2026-01-08 18:09:15] 2026-01-08 23:08:27,076 | INFO     | preparing for final server update for job 6963078437 in state='finished'
[2026-01-08 18:09:15] 2026-01-08 23:08:27,076 | INFO     | this job has now completed (state=finished)
[2026-01-08 18:09:15] 2026-01-08 23:08:27,077 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-08 18:09:15] 2026-01-08 23:08:27,077 | INFO     | log transfer has been attempted: DONE
[2026-01-08 18:09:15] 2026-01-08 23:08:27,077 | INFO     | job 6963078437 has finished - writing final server update
[2026-01-08 18:09:15] 2026-01-08 23:08:27,077 | INFO     | total number of processed events: 400 (read)
[2026-01-08 18:09:15] 2026-01-08 23:08:27,078 | INFO     | executing command: lscpu
[2026-01-08 18:09:15] 2026-01-08 23:08:27,104 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-08 18:09:15] 2026-01-08 23:08:27,789 | INFO     | time since job start (6027s) is within the limit (174528.0s)
[2026-01-08 18:09:15] 2026-01-08 23:08:28,855 | INFO     | monitor loop #446: job 0:6963078437 is in state 'finished'
[2026-01-08 18:09:15] 2026-01-08 23:08:28,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 18:09:15] 2026-01-08 23:08:29,794 | INFO     | time since job start (6029s) is within the limit (174528.0s)
[2026-01-08 18:09:15] 2026-01-08 23:08:31,357 | INFO     | monitor loop #447: job 0:6963078437 is in state 'finished'
[2026-01-08 18:09:15] 2026-01-08 23:08:31,357 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 18:09:15] 2026-01-08 23:08:31,799 | INFO     | time since job start (6031s) is within the limit (174528.0s)
[2026-01-08 18:09:15] 2026-01-08 23:08:31,974 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-08 18:09:15] 2026-01-08 23:08:31,978 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2026-01-08 18:09:15] 2026-01-08 23:08:31,981 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963078437/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 18:09:15] 2026-01-08 23:08:31,982 | INFO     | extracted standard info from prmon json
[2026-01-08 18:09:15] 2026-01-08 23:08:31,982 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 18:09:15] 2026-01-08 23:08:31,982 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 18:09:15] 2026-01-08 23:08:31,982 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 18:09:15] 2026-01-08 23:08:31,982 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 18:09:15] 2026-01-08 23:08:31,985 | INFO     | fitting pss+swap vs Time
[2026-01-08 18:09:15] 2026-01-08 23:08:31,985 | INFO     | sum of square deviations: 241429643.0
[2026-01-08 18:09:15] 2026-01-08 23:08:31,985 | INFO     | sum of deviations: -13526678813.000002
[2026-01-08 18:09:15] 2026-01-08 23:08:31,985 | INFO     | mean x: 1767910789.5
[2026-01-08 18:09:15] 2026-01-08 23:08:31,986 | INFO     | mean y: 2793683.717391304
[2026-01-08 18:09:15] 2026-01-08 23:08:31,986 | INFO     | intersect: 99054265253.02985
[2026-01-08 18:09:15] 2026-01-08 23:08:31,986 | INFO     | chi2: 0.1414571047866547
[2026-01-08 18:09:15] 2026-01-08 23:08:31,986 | INFO     | current memory leak: -56.03 B/s (using 92 data points, chi2=0.14)
[2026-01-08 18:09:15] 2026-01-08 23:08:31,986 | INFO     | could have reported an average CPU frequency of 2125 MHz (7 samples)
[2026-01-08 18:09:15] 2026-01-08 23:08:31,987 | INFO     | ..............................
[2026-01-08 18:09:15] 2026-01-08 23:08:31,987 | INFO     | . Timing measurements:
[2026-01-08 18:09:15] 2026-01-08 23:08:31,987 | INFO     | . get job = 0 s
[2026-01-08 18:09:15] 2026-01-08 23:08:31,987 | INFO     | . initial setup = 1 s
[2026-01-08 18:09:15] 2026-01-08 23:08:31,987 | INFO     | . payload setup = 7 s
[2026-01-08 18:09:15] 2026-01-08 23:08:31,987 | INFO     | . stage-in = 0 s
[2026-01-08 18:09:15] 2026-01-08 23:08:31,987 | INFO     | . payload execution = 5996 s
[2026-01-08 18:09:15] 2026-01-08 23:08:31,987 | INFO     | . stage-out = 0 s
[2026-01-08 18:09:15] 2026-01-08 23:08:31,987 | INFO     | . log creation = 0 s
[2026-01-08 18:09:15] 2026-01-08 23:08:31,987 | INFO     | ..............................
[2026-01-08 18:09:15] 2026-01-08 23:08:32,067 | INFO     | 
[2026-01-08 18:09:15] 2026-01-08 23:08:32,067 | INFO     | job summary report
[2026-01-08 18:09:15] 2026-01-08 23:08:32,067 | INFO     | --------------------------------------------------
[2026-01-08 18:09:15] 2026-01-08 23:08:32,067 | INFO     | PanDA job id: 6963078437
[2026-01-08 18:09:15] 2026-01-08 23:08:32,068 | INFO     | task id: 47898826
[2026-01-08 18:09:15] 2026-01-08 23:08:32,068 | INFO     | errors: (none)
[2026-01-08 18:09:15] 2026-01-08 23:08:32,068 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 18:09:15] 2026-01-08 23:08:32,068 | INFO     | pilot state: finished 
[2026-01-08 18:09:15] 2026-01-08 23:08:32,068 | INFO     | transexitcode: 0
[2026-01-08 18:09:15] 2026-01-08 23:08:32,068 | INFO     | exeerrorcode: 0
[2026-01-08 18:09:15] 2026-01-08 23:08:32,069 | INFO     | exeerrordiag: 
[2026-01-08 18:09:15] 2026-01-08 23:08:32,069 | INFO     | exitcode: 0
[2026-01-08 18:09:15] 2026-01-08 23:08:32,069 | INFO     | exitmsg: OK
[2026-01-08 18:09:15] 2026-01-08 23:08:32,069 | INFO     | cpuconsumptiontime: 64483 s
[2026-01-08 18:09:15] 2026-01-08 23:08:32,069 | INFO     | nevents: 400
[2026-01-08 18:09:15] 2026-01-08 23:08:32,069 | INFO     | neventsw: 0
[2026-01-08 18:09:15] 2026-01-08 23:08:32,069 | INFO     | pid: 11812
[2026-01-08 18:09:15] 2026-01-08 23:08:32,070 | INFO     | pgrp: 11812
[2026-01-08 18:09:15] 2026-01-08 23:08:32,070 | INFO     | corecount: 12
[2026-01-08 18:09:15] 2026-01-08 23:08:32,070 | INFO     | event service: False
[2026-01-08 18:09:15] 2026-01-08 23:08:32,070 | INFO     | sizes: {0: 2283141, 1: 2283997, 6: 2284259, 12: 2284287, 6007: 2311010, 6008: 2320192, 6016: 2320330}
[2026-01-08 18:09:15] 2026-01-08 23:08:32,070 | INFO     | --------------------------------------------------
[2026-01-08 18:09:15] 2026-01-08 23:08:32,070 | INFO     | 
[2026-01-08 18:09:15] 2026-01-08 23:08:32,071 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 18:09:15] 2026-01-08 23:08:32,094 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,095 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,095 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,095 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,095 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,095 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,095 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,096 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,096 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,096 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,096 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,096 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,096 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,097 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,097 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,097 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,097 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,097 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 18:09:15] 2026-01-08 23:08:32,097 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,097 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 18:09:15] 2026-01-08 23:08:32,098 | INFO     | job 6963078437 has completed (purged errors)
[2026-01-08 18:09:15] 2026-01-08 23:08:32,098 | INFO     | overall cleanup function is called
[2026-01-08 18:09:15] 2026-01-08 23:08:33,106 | INFO     | --- collectZombieJob: --- 10, [11812]
[2026-01-08 18:09:15] 2026-01-08 23:08:33,106 | INFO     | zombie collector waiting for pid 11812
[2026-01-08 18:09:15] 2026-01-08 23:08:33,107 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 18:09:15] 2026-01-08 23:08:33,107 | INFO     | collected zombie processes
[2026-01-08 18:09:15] 2026-01-08 23:08:33,107 | INFO     | will attempt to kill all subprocesses of pid=11812
[2026-01-08 18:09:15] 2026-01-08 23:08:33,199 | INFO     | process IDs to be killed: [11812] (in reverse order)
[2026-01-08 18:09:15] 2026-01-08 23:08:33,306 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 18:09:15] 2026-01-08 23:08:33,306 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 18:09:15] 2026-01-08 23:08:33,310 | INFO     | did not find any defunct processes belonging to 11812
[2026-01-08 18:09:15] 2026-01-08 23:08:33,314 | INFO     | did not find any defunct processes belonging to 11812
[2026-01-08 18:09:15] 2026-01-08 23:08:33,314 | INFO     | ready for new job
[2026-01-08 18:09:15] 2026-01-08 23:08:33,314 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 18:09:15] 2026-01-08 23:08:33,315 | INFO     | ***************************************
[2026-01-08 18:09:15] 2026-01-08 23:08:33,315 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 18:09:15] 2026-01-08 23:08:33,315 | INFO     | ***************************************
[2026-01-08 18:09:15] 2026-01-08 23:08:33,316 | INFO     | 
[2026-01-08 18:09:15] 2026-01-08 23:08:33,316 | INFO     | architecture information:
[2026-01-08 18:09:15] 2026-01-08 23:08:33,317 | INFO     | executing command: cat /etc/os-release
[2026-01-08 18:09:15] 2026-01-08 23:08:33,331 | INFO     | cat /etc/os-release:
[2026-01-08 18:09:15] NAME="CentOS Linux"
[2026-01-08 18:09:15] VERSION="7 (Core)"
[2026-01-08 18:09:15] ID="centos"
[2026-01-08 18:09:15] ID_LIKE="rhel fedora"
[2026-01-08 18:09:15] VERSION_ID="7"
[2026-01-08 18:09:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 18:09:15] ANSI_COLOR="0;31"
[2026-01-08 18:09:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 18:09:15] HOME_URL="https://www.centos.org/"
[2026-01-08 18:09:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 18:09:15] 
[2026-01-08 18:09:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 18:09:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 18:09:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 18:09:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 18:09:15] 
[2026-01-08 18:09:15] 2026-01-08 23:08:33,331 | INFO     | ***************************************
[2026-01-08 18:09:15] 2026-01-08 23:08:33,834 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 18:09:15] 2026-01-08 23:08:33,851 | INFO     | sufficient remaining disk space (29319233536 B)
[2026-01-08 18:09:15] 2026-01-08 23:08:33,851 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 18:09:15] 2026-01-08 23:08:33,851 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 18:09:15] 2026-01-08 23:08:33,851 | INFO     | update_server=False
[2026-01-08 18:09:15] 2026-01-08 23:08:33,851 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 18:09:15] 2026-01-08 23:08:33,852 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 18:09:15] 2026-01-08 23:08:33,867 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 18:09:15] 2026-01-08 23:08:33,867 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 18:09:15] 2026-01-08 23:08:33,867 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 18:09:15] 2026-01-08 23:08:33,867 | INFO     | will abort loop
[2026-01-08 18:09:15] 2026-01-08 23:08:34,146 | INFO     | all job control threads have been joined
[2026-01-08 18:09:15] 2026-01-08 23:08:34,363 | INFO     | all data control threads have been joined
[2026-01-08 18:09:15] 2026-01-08 23:08:34,632 | INFO     | all payload control threads have been joined
[2026-01-08 18:09:15] 2026-01-08 23:08:34,677 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 18:09:15] 2026-01-08 23:08:34,754 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 18:09:15] 2026-01-08 23:08:34,854 | INFO     | [job] queue monitor thread has finished
[2026-01-08 18:09:15] 2026-01-08 23:08:34,857 | INFO     | [job] retrieve thread has finished
[2026-01-08 18:09:15] 2026-01-08 23:08:34,873 | INFO     | [job] job monitor thread has finished
[2026-01-08 18:09:15] 2026-01-08 23:08:35,152 | INFO     | [job] control thread has finished
[2026-01-08 18:09:15] 2026-01-08 23:08:35,242 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 18:09:15] 2026-01-08 23:08:35,366 | INFO     | [data] control thread has finished
[2026-01-08 18:09:15] 2026-01-08 23:08:35,404 | INFO     | [data] copytool_in thread has finished
[2026-01-08 18:09:15] 2026-01-08 23:08:35,503 | INFO     | [payload] validate_post thread has finished
[2026-01-08 18:09:15] 2026-01-08 23:08:35,638 | INFO     | [payload] control thread has finished
[2026-01-08 18:09:15] 2026-01-08 23:08:36,120 | INFO     | [payload] failed_post thread has finished
[2026-01-08 18:09:15] 2026-01-08 23:08:36,221 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 18:09:15] 2026-01-08 23:08:36,224 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 18:09:15] 2026-01-08 23:08:36,233 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 18:09:15] 2026-01-08 23:08:36,239 | INFO     | [job] validate thread has finished
[2026-01-08 18:09:15] 2026-01-08 23:08:36,682 | INFO     | [data] copytool_out thread has finished
[2026-01-08 18:09:15] 2026-01-08 23:08:38,760 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 18:09:15] 2026-01-08 23:09:05,006 | INFO     | PID=5333 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 18:09:15] 2026-01-08 23:09:05,007 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 18:09:15] 2026-01-08 23:09:05,007 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 18:09:15] 2026-01-08 23:09:05,007 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 18:09:15] 2026-01-08 23:09:09,259 | INFO     | [monitor] cgroup control has ended
[2026-01-08 18:09:15] 2026-01-08 23:09:10,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139689716864832)>', '<ExcThread(monitor, started 139688669062912)>']
[2026-01-08 18:09:15] 2026-01-08 23:09:11,034 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 18:09:15] 2026-01-08 23:09:11,034 | INFO     | [monitor] control thread has ended
[2026-01-08 18:09:15] 2026-01-08 23:09:15,549 | INFO     | all workflow threads have been joined
[2026-01-08 18:09:15] 2026-01-08 23:09:15,550 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 18:09:15] 2026-01-08 23:09:15,558 | INFO     | traces error code: 0
[2026-01-08 18:09:15] 2026-01-08 23:09:15,558 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 18:09:15] 2026-01-08 23:09:15,646 [wrapper] ==== pilot stdout END ====
[2026-01-08 18:09:15] 2026-01-08 23:09:15,649 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 18:09:15] 2026-01-08 23:09:15,652 [wrapper] pilotpid: 5333
[2026-01-08 18:09:15] 2026-01-08 23:09:15,656 [wrapper] Pilot exit status: 0
[2026-01-08 18:09:15] 2026-01-08 23:09:15,669 [wrapper] pandaids: 6963078437 6963078437
[2026-01-08 18:09:15] 2026-01-08 23:09:15,705 [wrapper] cleanup supervisor_pilot 11216 5334
[2026-01-08 18:09:15] 2026-01-08 23:09:15,708 [wrapper] Test setup, not cleaning
[2026-01-08 18:09:15] 2026-01-08 23:09:15,711 [wrapper] apfmon messages muted
[2026-01-08 18:09:15] 2026-01-08 23:09:15,715 [wrapper] ==== wrapper stdout END ====
[2026-01-08 18:09:15] 2026-01-08 23:09:15,719 [wrapper] ==== wrapper stderr END ====
[2026-01-08 18:09:15]  *** Error codes and diagnostics ***
[2026-01-08 18:09:15]     "exeErrorCode": 0,
[2026-01-08 18:09:15]     "exeErrorDiag": "",
[2026-01-08 18:09:15]     "pilotErrorCode": 0,
[2026-01-08 18:09:15]     "pilotErrorDiag": "",
[2026-01-08 18:09:15]  *** Listing of results directory ***
[2026-01-08 18:09:15] total 655520
[2026-01-08 18:09:15] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-08 18:09:15] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 06:09 pilot3.tar.gz
[2026-01-08 18:09:15] -rwx------ 1 boincer umatlas     36322 Jan  8 06:10 runpilot2-wrapper.sh
[2026-01-08 18:09:15] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 06:14 queuedata.json
[2026-01-08 18:09:15] -rw-r--r-- 1 boincer umatlas       100 Jan  8 15:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 18:09:15] -rwxr-xr-x 1 boincer umatlas      7986 Jan  8 15:24 run_atlas
[2026-01-08 18:09:15] -rw-r--r-- 1 boincer umatlas       105 Jan  8 15:24 job.xml
[2026-01-08 18:09:15] -rw-r--r-- 3 boincer umatlas 222909428 Jan  8 15:24 EVNT.47898824._000968.pool.root.1
[2026-01-08 18:09:15] -rw-r--r-- 3 boincer umatlas 222909428 Jan  8 15:24 ATLAS.root_0
[2026-01-08 18:09:15] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 15:24 start_atlas.sh
[2026-01-08 18:09:15] drwxrwx--x 2 boincer umatlas      4096 Jan  8 15:24 shared
[2026-01-08 18:09:15] -rw-r--r-- 2 boincer umatlas    592394 Jan  8 15:24 input.tar.gz
[2026-01-08 18:09:15] -rw-r--r-- 1 boincer umatlas         0 Jan  8 15:24 boinc_lockfile
[2026-01-08 18:09:15] -rw------- 1 boincer umatlas   1516240 Jan  8 15:24 agis_ddmendpoints.agis.ALL.json
[2026-01-08 18:09:15] -rw-r--r-- 1 boincer umatlas      2519 Jan  8 16:27 pandaJob.out
[2026-01-08 18:09:15] -rw------- 1 boincer umatlas        57 Jan  8 16:27 setup.sh.local
[2026-01-08 18:09:15] -rw------- 1 boincer umatlas    989845 Jan  8 16:27 agis_schedconf.cvmfs.json
[2026-01-08 18:09:15] -rw-r--r-- 1 boincer umatlas      5952 Jan  8 18:02 init_data.xml
[2026-01-08 18:09:15] -rw------- 1 boincer umatlas 218967492 Jan  8 18:07 HITS.47898826._024596.pool.root.1
[2026-01-08 18:09:15] -rw-r--r-- 1 boincer umatlas       530 Jan  8 18:07 boinc_task_state.xml
[2026-01-08 18:09:15] -rw------- 1 boincer umatlas      1047 Jan  8 18:08 memory_monitor_summary.json
[2026-01-08 18:09:15] -rw------- 1 boincer umatlas        96 Jan  8 18:08 pilot_heartbeat.json
[2026-01-08 18:09:15] -rw------- 1 boincer umatlas    414672 Jan  8 18:08 log.47898826._024596.job.log.tgz.1
[2026-01-08 18:09:15] -rw------- 1 boincer umatlas      7853 Jan  8 18:08 heartbeat.json
[2026-01-08 18:09:15] -rw-r--r-- 1 boincer umatlas      8192 Jan  8 18:08 boinc_mmap_file
[2026-01-08 18:09:15] -rw-r--r-- 1 boincer umatlas        27 Jan  8 18:08 wrapper_checkpoint.txt
[2026-01-08 18:09:15] -rw------- 1 boincer umatlas      4931 Jan  8 18:09 pilotlog.txt
[2026-01-08 18:09:15] -rw------- 1 boincer umatlas    855309 Jan  8 18:09 log.47898826._024596.job.log.1
[2026-01-08 18:09:15] -rw------- 1 boincer umatlas       357 Jan  8 18:09 output.list
[2026-01-08 18:09:15] -rw-r--r-- 1 boincer umatlas       620 Jan  8 18:09 runtime_log
[2026-01-08 18:09:15] -rw------- 1 boincer umatlas   1290240 Jan  8 18:09 result.tar.gz
[2026-01-08 18:09:15] -rw-r--r-- 1 boincer umatlas      9429 Jan  8 18:09 runtime_log.err
[2026-01-08 18:09:15] -rw------- 1 boincer umatlas       784 Jan  8 18:09 82lLDmi52x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmaCfKDmBQdUun.diag
[2026-01-08 18:09:15] -rw-r--r-- 1 boincer umatlas     24072 Jan  8 18:09 stderr.txt
[2026-01-08 18:09:15] HITS file was successfully produced:
[2026-01-08 18:09:15] -rw------- 1 boincer umatlas 218967492 Jan  8 18:07 shared/HITS.pool.root.1
[2026-01-08 18:09:15]  *** Contents of shared directory: ***
[2026-01-08 18:09:15] total 433388
[2026-01-08 18:09:15] -rw-r--r-- 3 boincer umatlas 222909428 Jan  8 15:24 ATLAS.root_0
[2026-01-08 18:09:15] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 15:24 start_atlas.sh
[2026-01-08 18:09:15] -rw-r--r-- 2 boincer umatlas    592394 Jan  8 15:24 input.tar.gz
[2026-01-08 18:09:15] -rw------- 1 boincer umatlas 218967492 Jan  8 18:07 HITS.pool.root.1
[2026-01-08 18:09:15] -rw------- 1 boincer umatlas   1290240 Jan  8 18:09 result.tar.gz
18:09:17 (1480): run_atlas exited; CPU time 64463.199681
18:09:17 (1480): called boinc_finish(0)

</stderr_txt>
]]>

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