Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:48:18 (272120): wrapper (7.7.26015): starting
05:48:18 (272120): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 05:48:18] Arguments: --nthreads 4
[2026-01-09 05:48:18] Threads: 4
[2026-01-09 05:48:18] Checking for CVMFS
[2026-01-09 05:48:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 05:48:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 05:48:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 05:48:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 05:48:18] 2.9.2.0 3067 914 80248 154931 3 57 20941849 36864000 0 130560 0 701482 99.991 31705 2376 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 05:48:18] CVMFS is ok
[2026-01-09 05:48:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 05:48:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 05:48:18] Further information can be found at the LHC@home message board.
[2026-01-09 05:48:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 05:48:18] Checking for apptainer binary...
[2026-01-09 05:48:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 05:48:18] Running /usr/bin/apptainer --version
[2026-01-09 05:48:18] apptainer version 1.4.1-1.1
[2026-01-09 05:48:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 05:48:18] thA383a
[2026-01-09 05:48:18] apptainer works
[2026-01-09 05:48:18] Set ATHENA_PROC_NUMBER=4
[2026-01-09 05:48:18] Set ATHENA_CORE_NUMBER=4
[2026-01-09 05:48:18] Starting ATLAS job with PandaID=6963077445
[2026-01-09 05:48:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 07:26:44]  *** The last 200 lines of the pilot log: ***
[2026-01-09 07:26:44] 2026-01-09 06:26:12,248 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 07:26:44] 2026-01-09 06:26:12,248 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 07:26:44] 2026-01-09 06:26:12,248 | INFO     | job 6963077445 has completed (purged errors)
[2026-01-09 07:26:44] 2026-01-09 06:26:12,249 | INFO     | overall cleanup function is called
[2026-01-09 07:26:44] 2026-01-09 06:26:13,255 | INFO     | --- collectZombieJob: --- 10, [282503]
[2026-01-09 07:26:44] 2026-01-09 06:26:13,255 | INFO     | zombie collector waiting for pid 282503
[2026-01-09 07:26:44] 2026-01-09 06:26:13,256 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 07:26:44] 2026-01-09 06:26:13,256 | INFO     | collected zombie processes
[2026-01-09 07:26:44] 2026-01-09 06:26:13,256 | INFO     | will attempt to kill all subprocesses of pid=282503
[2026-01-09 07:26:44] 2026-01-09 06:26:13,300 | INFO     | process IDs to be killed: [282503] (in reverse order)
[2026-01-09 07:26:44] 2026-01-09 06:26:13,333 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 07:26:44] 2026-01-09 06:26:13,334 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 07:26:44] 2026-01-09 06:26:13,335 | INFO     | did not find any defunct processes belonging to 282503
[2026-01-09 07:26:44] 2026-01-09 06:26:13,336 | INFO     | did not find any defunct processes belonging to 282503
[2026-01-09 07:26:44] 2026-01-09 06:26:13,337 | INFO     | ready for new job
[2026-01-09 07:26:44] 2026-01-09 06:26:13,337 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 07:26:44] 2026-01-09 06:26:13,337 | INFO     | ***************************************
[2026-01-09 07:26:44] 2026-01-09 06:26:13,337 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 07:26:44] 2026-01-09 06:26:13,337 | INFO     | ***************************************
[2026-01-09 07:26:44] 2026-01-09 06:26:13,337 | INFO     | 
[2026-01-09 07:26:44] 2026-01-09 06:26:13,338 | INFO     | architecture information:
[2026-01-09 07:26:44] 2026-01-09 06:26:13,338 | INFO     | executing command: cat /etc/os-release
[2026-01-09 07:26:44] 2026-01-09 06:26:13,352 | INFO     | cat /etc/os-release:
[2026-01-09 07:26:44] NAME="CentOS Linux"
[2026-01-09 07:26:44] VERSION="7 (Core)"
[2026-01-09 07:26:44] ID="centos"
[2026-01-09 07:26:44] ID_LIKE="rhel fedora"
[2026-01-09 07:26:44] VERSION_ID="7"
[2026-01-09 07:26:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 07:26:44] ANSI_COLOR="0;31"
[2026-01-09 07:26:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 07:26:44] HOME_URL="https://www.centos.org/"
[2026-01-09 07:26:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 07:26:44] 
[2026-01-09 07:26:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 07:26:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 07:26:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 07:26:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 07:26:44] 
[2026-01-09 07:26:44] 2026-01-09 06:26:13,352 | INFO     | ***************************************
[2026-01-09 07:26:44] 2026-01-09 06:26:13,855 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 07:26:44] 2026-01-09 06:26:13,872 | INFO     | sufficient remaining disk space (239535652864 B)
[2026-01-09 07:26:44] 2026-01-09 06:26:13,872 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 07:26:44] 2026-01-09 06:26:13,872 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 07:26:44] 2026-01-09 06:26:13,872 | INFO     | update_server=False
[2026-01-09 07:26:44] 2026-01-09 06:26:13,872 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 07:26:44] 2026-01-09 06:26:13,872 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 07:26:44] 2026-01-09 06:26:13,873 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 07:26:44] 2026-01-09 06:26:13,873 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 07:26:44] 2026-01-09 06:26:13,873 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 07:26:44] 2026-01-09 06:26:13,873 | INFO     | aborting loop
[2026-01-09 07:26:44] 2026-01-09 06:26:14,124 | INFO     | all job control threads have been joined
[2026-01-09 07:26:44] 2026-01-09 06:26:14,594 | INFO     | all data control threads have been joined
[2026-01-09 07:26:44] 2026-01-09 06:26:14,681 | INFO     | all payload control threads have been joined
[2026-01-09 07:26:44] 2026-01-09 06:26:14,875 | INFO     | [job] job monitor thread has finished
[2026-01-09 07:26:44] 2026-01-09 06:26:14,875 | INFO     | [job] queue monitor thread has finished
[2026-01-09 07:26:44] 2026-01-09 06:26:14,878 | INFO     | [job] retrieve thread has finished
[2026-01-09 07:26:44] 2026-01-09 06:26:15,130 | INFO     | [job] control thread has finished
[2026-01-09 07:26:44] 2026-01-09 06:26:15,213 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 07:26:44] 2026-01-09 06:26:15,288 | INFO     | [job] validate thread has finished
[2026-01-09 07:26:44] 2026-01-09 06:26:15,599 | INFO     | [data] control thread has finished
[2026-01-09 07:26:44] 2026-01-09 06:26:15,687 | INFO     | [payload] control thread has finished
[2026-01-09 07:26:44] 2026-01-09 06:26:15,777 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 07:26:44] 2026-01-09 06:26:15,850 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 07:26:44] 2026-01-09 06:26:15,853 | INFO     | [payload] validate_post thread has finished
[2026-01-09 07:26:44] 2026-01-09 06:26:15,879 | INFO     | [data] copytool_out thread has finished
[2026-01-09 07:26:44] 2026-01-09 06:26:16,185 | INFO     | [data] copytool_in thread has finished
[2026-01-09 07:26:44] 2026-01-09 06:26:16,413 | INFO     | [payload] failed_post thread has finished
[2026-01-09 07:26:44] 2026-01-09 06:26:17,879 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 07:26:44] 2026-01-09 06:26:24,059 | INFO     | job.realtimelogging is not enabled
[2026-01-09 07:26:44] 2026-01-09 06:26:25,065 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 07:26:44] 2026-01-09 06:26:34,227 | INFO     | [monitor] cgroup control has ended
[2026-01-09 07:26:44] 2026-01-09 06:26:35,852 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139887482345280)>', '<ExcThread(monitor, started 139886405347072)>']
[2026-01-09 07:26:44] 2026-01-09 06:26:40,878 | INFO     | all workflow threads have been joined
[2026-01-09 07:26:44] 2026-01-09 06:26:40,878 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 07:26:44] 2026-01-09 06:26:40,878 | INFO     | traces error code: 0
[2026-01-09 07:26:44] 2026-01-09 06:26:40,878 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 07:26:44] 2026-01-09 06:26:44,594 | INFO     | PID=275930 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 07:26:44] 2026-01-09 06:26:44,594 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 07:26:44] 2026-01-09 06:26:44,594 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 07:26:44] 2026-01-09 06:26:44,594 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 07:26:44] 2026-01-09 06:26:44,594 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 07:26:44] 2026-01-09 06:26:44,594 | INFO     | [monitor] control thread has ended
[2026-01-09 07:26:44] 2026-01-09 06:26:44,670 [wrapper] ==== pilot stdout END ====
[2026-01-09 07:26:44] 2026-01-09 06:26:44,674 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 07:26:44] 2026-01-09 06:26:44,678 [wrapper] pilotpid: 275930
[2026-01-09 07:26:44] 2026-01-09 06:26:44,682 [wrapper] Pilot exit status: 0
[2026-01-09 07:26:44] 2026-01-09 06:26:44,693 [wrapper] pandaids: 6963077445
[2026-01-09 07:26:44] 2026-01-09 06:26:44,714 [wrapper] cleanup supervisor_pilot  294689 275931
[2026-01-09 07:26:44] 2026-01-09 06:26:44,718 [wrapper] Test setup, not cleaning
[2026-01-09 07:26:44] 2026-01-09 06:26:44,722 [wrapper] apfmon messages muted
[2026-01-09 07:26:44] 2026-01-09 06:26:44,726 [wrapper] ==== wrapper stdout END ====
[2026-01-09 07:26:44] 2026-01-09 06:26:44,729 [wrapper] ==== wrapper stderr END ====
[2026-01-09 07:26:44]  *** Error codes and diagnostics ***
[2026-01-09 07:26:44]     "exeErrorCode": 0,
[2026-01-09 07:26:44]     "exeErrorDiag": "",
[2026-01-09 07:26:44]     "pilotErrorCode": 0,
[2026-01-09 07:26:44]     "pilotErrorDiag": "",
[2026-01-09 07:26:44]  *** Listing of results directory ***
[2026-01-09 07:26:44] total 439224
[2026-01-09 07:26:44] -rwx------ 1 boinc boinc     36322 Jan  8 12:07 runpilot2-wrapper.sh
[2026-01-09 07:26:44] -rw-r--r-- 1 boinc boinc      5112 Jan  8 12:09 queuedata.json
[2026-01-09 07:26:44] -rw-r--r-- 1 boinc boinc    579449 Jan  8 12:09 pilot3.tar.gz
[2026-01-09 07:26:44] -rw-r--r-- 1 boinc boinc       100 Jan  9 05:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 07:26:44] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 05:48 run_atlas
[2026-01-09 07:26:44] -rw-r--r-- 1 boinc boinc       105 Jan  9 05:48 job.xml
[2026-01-09 07:26:44] -rw-r--r-- 2 boinc boinc 223300359 Jan  9 05:48 EVNT.47898824._000959.pool.root.1
[2026-01-09 07:26:44] -rw-r--r-- 2 boinc boinc    592392 Jan  9 05:48 input.tar.gz
[2026-01-09 07:26:44] -rw-r--r-- 2 boinc boinc     15847 Jan  9 05:48 start_atlas.sh
[2026-01-09 07:26:44] drwxrwx--x 2 boinc boinc      4096 Jan  9 05:48 shared
[2026-01-09 07:26:44] -rw-r--r-- 1 boinc boinc         0 Jan  9 05:48 boinc_setup_complete
[2026-01-09 07:26:44] -rw-r--r-- 1 boinc boinc      6377 Jan  9 05:48 init_data.xml
[2026-01-09 07:26:44] -rw-r--r-- 1 boinc boinc         0 Jan  9 05:48 boinc_lockfile
[2026-01-09 07:26:44] -rw-r--r-- 1 boinc boinc      2519 Jan  9 05:48 pandaJob.out
[2026-01-09 07:26:44] -rw------- 1 boinc boinc    989771 Jan  9 05:48 agis_schedconf.cvmfs.json
[2026-01-09 07:26:44] -rw------- 1 boinc boinc   1516240 Jan  9 05:48 agis_ddmendpoints.agis.ALL.json
[2026-01-09 07:26:44] drwx------ 5 boinc boinc      4096 Jan  9 05:48 pilot3
[2026-01-09 07:26:44] -rw------- 1 boinc boinc 220267918 Jan  9 07:25 HITS.47898826._024100.pool.root.1
[2026-01-09 07:26:44] -rw-r--r-- 1 boinc boinc       529 Jan  9 07:25 boinc_task_state.xml
[2026-01-09 07:26:44] -rw------- 1 boinc boinc        95 Jan  9 07:25 pilot_heartbeat.json
[2026-01-09 07:26:44] -rw------- 1 boinc boinc      1021 Jan  9 07:26 memory_monitor_summary.json
[2026-01-09 07:26:44] -rw------- 1 boinc boinc    299438 Jan  9 07:26 log.47898826._024100.job.log.tgz.1
[2026-01-09 07:26:44] -rw------- 1 boinc boinc      7767 Jan  9 07:26 heartbeat.json
[2026-01-09 07:26:44] -rw-r--r-- 1 boinc boinc      8192 Jan  9 07:26 boinc_mmap_file
[2026-01-09 07:26:44] -rw-r--r-- 1 boinc boinc        27 Jan  9 07:26 wrapper_checkpoint.txt
[2026-01-09 07:26:44] -rw------- 1 boinc boinc       746 Jan  9 07:26 pilotlog.txt
[2026-01-09 07:26:44] -rw------- 1 boinc boinc    851616 Jan  9 07:26 log.47898826._024100.job.log.1
[2026-01-09 07:26:44] -rw------- 1 boinc boinc       357 Jan  9 07:26 output.list
[2026-01-09 07:26:44] -rw-r--r-- 1 boinc boinc       620 Jan  9 07:26 runtime_log
[2026-01-09 07:26:44] -rw------- 1 boinc boinc   1167360 Jan  9 07:26 result.tar.gz
[2026-01-09 07:26:44] -rw-r--r-- 1 boinc boinc      8902 Jan  9 07:26 runtime_log.err
[2026-01-09 07:26:44] -rw------- 1 boinc boinc       660 Jan  9 07:26 RzfNDmv22x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQGkKDmMSrvTn.diag
[2026-01-09 07:26:44] -rw-r--r-- 1 boinc boinc     11095 Jan  9 07:26 stderr.txt
[2026-01-09 07:26:44] HITS file was successfully produced:
[2026-01-09 07:26:44] -rw------- 1 boinc boinc 220267918 Jan  9 07:25 shared/HITS.pool.root.1
[2026-01-09 07:26:44]  *** Contents of shared directory: ***
[2026-01-09 07:26:44] total 434920
[2026-01-09 07:26:44] -rw-r--r-- 2 boinc boinc 223300359 Jan  9 05:48 ATLAS.root_0
[2026-01-09 07:26:44] -rw-r--r-- 2 boinc boinc    592392 Jan  9 05:48 input.tar.gz
[2026-01-09 07:26:44] -rw-r--r-- 2 boinc boinc     15847 Jan  9 05:48 start_atlas.sh
[2026-01-09 07:26:44] -rw------- 1 boinc boinc 220267918 Jan  9 07:25 HITS.pool.root.1
[2026-01-09 07:26:44] -rw------- 1 boinc boinc   1167360 Jan  9 07:26 result.tar.gz
07:26:46 (272120): run_atlas exited; CPU time 22245.606047
07:26:46 (272120): called boinc_finish(0)

</stderr_txt>
]]>

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