Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:52:00 (6949): wrapper (7.7.26015): starting
02:52:00 (6949): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 02:52:00] Arguments: --nthreads 8
[2026-01-09 02:52:00] Threads: 8
[2026-01-09 02:52:00] Checking for CVMFS
[2026-01-09 02:52:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 02:52:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 02:52:02] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 02:52:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 02:52:03] 2.11.2.0 17738 34779 127400 154926 3 100 18882414 25165825 1088 130560 0 15222002 99.813 10233502 3636 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 02:52:03] CVMFS is ok
[2026-01-09 02:52:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 02:52:03] Checking for apptainer binary...
[2026-01-09 02:52:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 02:52:03] Running /usr/bin/apptainer --version
[2026-01-09 02:52:04] apptainer version 1.3.2-1.el7
[2026-01-09 02:52:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 02:52:08] cg-vwn450.simple-grid.lan
[2026-01-09 02:52:08] apptainer works
[2026-01-09 02:52:08] Set ATHENA_PROC_NUMBER=8
[2026-01-09 02:52:08] Set ATHENA_CORE_NUMBER=8
[2026-01-09 02:52:08] Starting ATLAS job with PandaID=6963147252
[2026-01-09 02:52:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 06:41:10]  *** The last 200 lines of the pilot log: ***
[2026-01-09 06:41:10] 2026-01-09 05:40:26,699 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 06:41:10] 2026-01-09 05:40:26,700 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 06:41:10] 2026-01-09 05:40:26,702 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6963147252/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 06:41:10] 2026-01-09 05:40:26,703 | INFO     | extracted standard info from prmon json
[2026-01-09 06:41:10] 2026-01-09 05:40:26,703 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 06:41:10] 2026-01-09 05:40:26,703 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 06:41:10] 2026-01-09 05:40:26,704 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 06:41:10] 2026-01-09 05:40:26,704 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 06:41:10] 2026-01-09 05:40:26,709 | INFO     | fitting pss+swap vs Time
[2026-01-09 06:41:10] 2026-01-09 05:40:26,709 | INFO     | sum of square deviations: 2912836010.0
[2026-01-09 06:41:10] 2026-01-09 05:40:26,711 | INFO     | sum of deviations: 116123066935.0
[2026-01-09 06:41:10] 2026-01-09 05:40:26,711 | INFO     | mean x: 1767930770.0
[2026-01-09 06:41:10] 2026-01-09 05:40:26,711 | INFO     | mean y: 2394500.0142180095
[2026-01-09 06:41:10] 2026-01-09 05:40:26,711 | INFO     | intersect: -70477901141.88019
[2026-01-09 06:41:10] 2026-01-09 05:40:26,712 | INFO     | chi2: 8.494320133990621
[2026-01-09 06:41:10] 2026-01-09 05:40:26,712 | INFO     | sum of square deviations: 2710627567.5
[2026-01-09 06:41:10] 2026-01-09 05:40:26,714 | INFO     | sum of deviations: 127611954493.99997
[2026-01-09 06:41:10] 2026-01-09 05:40:26,714 | INFO     | mean x: 1767930617.5
[2026-01-09 06:41:10] 2026-01-09 05:40:26,714 | INFO     | mean y: 2402951.9029126214
[2026-01-09 06:41:10] 2026-01-09 05:40:26,714 | INFO     | intersect: -83228906363.31871
[2026-01-09 06:41:10] 2026-01-09 05:40:26,715 | INFO     | chi2: 7.724197623434298
[2026-01-09 06:41:10] 2026-01-09 05:40:26,715 | INFO     | current chi2=7.724197623434298 (change=9.066323124255979 %)
[2026-01-09 06:41:10] 2026-01-09 05:40:26,715 | INFO     | right removable region: 205
[2026-01-09 06:41:10] 2026-01-09 05:40:26,715 | INFO     | sum of square deviations: 2710627567.5
[2026-01-09 06:41:10] 2026-01-09 05:40:26,717 | INFO     | sum of deviations: 43515149496.5
[2026-01-09 06:41:10] 2026-01-09 05:40:26,717 | INFO     | mean x: 1767930922.5
[2026-01-09 06:41:10] 2026-01-09 05:40:26,717 | INFO     | mean y: 2449223.0436893203
[2026-01-09 06:41:10] 2026-01-09 05:40:26,718 | INFO     | intersect: -28379088438.00301
[2026-01-09 06:41:10] 2026-01-09 05:40:26,718 | INFO     | chi2: 3.4006955187836123
[2026-01-09 06:41:10] 2026-01-09 05:40:26,718 | INFO     | current chi2=3.4006955187836123 (change=59.96506530080625 %)
[2026-01-09 06:41:10] 2026-01-09 05:40:26,718 | INFO     | sum of square deviations: 2518000700.0
[2026-01-09 06:41:10] 2026-01-09 05:40:26,720 | INFO     | sum of deviations: -6839486774.0
[2026-01-09 06:41:10] 2026-01-09 05:40:26,720 | INFO     | mean x: 1767931075.0
[2026-01-09 06:41:10] 2026-01-09 05:40:26,720 | INFO     | mean y: 2488994.278606965
[2026-01-09 06:41:10] 2026-01-09 05:40:26,720 | INFO     | intersect: 4804608868.512996
[2026-01-09 06:41:10] 2026-01-09 05:40:26,721 | INFO     | chi2: 1.1059783527435374
[2026-01-09 06:41:10] 2026-01-09 05:40:26,721 | INFO     | current chi2=1.1059783527435374 (change=67.47787778603794 %)
[2026-01-09 06:41:10] 2026-01-09 05:40:26,721 | INFO     | sum of square deviations: 2334722845.0
[2026-01-09 06:41:10] 2026-01-09 05:40:26,723 | INFO     | sum of deviations: -20160167245.0
[2026-01-09 06:41:10] 2026-01-09 05:40:26,723 | INFO     | mean x: 1767931227.5
[2026-01-09 06:41:10] 2026-01-09 05:40:26,723 | INFO     | mean y: 2499985.2551020407
[2026-01-09 06:41:10] 2026-01-09 05:40:26,723 | INFO     | intersect: 15268461553.407806
[2026-01-09 06:41:10] 2026-01-09 05:40:26,723 | INFO     | chi2: 0.8889547833163096
[2026-01-09 06:41:10] 2026-01-09 05:40:26,724 | INFO     | current chi2=0.8889547833163096 (change=19.62276828374351 %)
[2026-01-09 06:41:10] 2026-01-09 05:40:26,724 | INFO     | left removable region: 30
[2026-01-09 06:41:10] 2026-01-09 05:40:26,724 | INFO     | sum of square deviations: 1661798600.0
[2026-01-09 06:41:10] 2026-01-09 05:40:26,725 | INFO     | sum of deviations: -6135021503.0
[2026-01-09 06:41:10] 2026-01-09 05:40:26,725 | INFO     | mean x: 1767931502.0
[2026-01-09 06:41:10] 2026-01-09 05:40:26,725 | INFO     | mean y: 2511611.257142857
[2026-01-09 06:41:10] 2026-01-09 05:40:26,726 | INFO     | intersect: 6529354142.356331
[2026-01-09 06:41:10] 2026-01-09 05:40:26,726 | INFO     | chi2: 0.013459580182482382
[2026-01-09 06:41:10] 2026-01-09 05:40:26,726 | INFO     | current memory leak: -3.69 B/s (using 175 data points, chi2=0.01)
[2026-01-09 06:41:10] 2026-01-09 05:40:26,727 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2026-01-09 06:41:10] 2026-01-09 05:40:26,727 | INFO     | ..............................
[2026-01-09 06:41:10] 2026-01-09 05:40:26,727 | INFO     | . Timing measurements:
[2026-01-09 06:41:10] 2026-01-09 05:40:26,727 | INFO     | . get job = 0 s
[2026-01-09 06:41:10] 2026-01-09 05:40:26,727 | INFO     | . initial setup = 11 s
[2026-01-09 06:41:10] 2026-01-09 05:40:26,727 | INFO     | . payload setup = 144 s
[2026-01-09 06:41:10] 2026-01-09 05:40:26,727 | INFO     | . stage-in = 0 s
[2026-01-09 06:41:10] 2026-01-09 05:40:26,727 | INFO     | . payload execution = 13039 s
[2026-01-09 06:41:10] 2026-01-09 05:40:26,728 | INFO     | . stage-out = 1 s
[2026-01-09 06:41:10] 2026-01-09 05:40:26,728 | INFO     | . log creation = 0 s
[2026-01-09 06:41:10] 2026-01-09 05:40:26,728 | INFO     | ..............................
[2026-01-09 06:41:10] 2026-01-09 05:40:26,877 | INFO     | 
[2026-01-09 06:41:10] 2026-01-09 05:40:26,878 | INFO     | job summary report
[2026-01-09 06:41:10] 2026-01-09 05:40:26,878 | INFO     | --------------------------------------------------
[2026-01-09 06:41:10] 2026-01-09 05:40:26,878 | INFO     | PanDA job id: 6963147252
[2026-01-09 06:41:10] 2026-01-09 05:40:26,878 | INFO     | task id: 47898826
[2026-01-09 06:41:10] 2026-01-09 05:40:26,878 | INFO     | errors: (none)
[2026-01-09 06:41:10] 2026-01-09 05:40:26,878 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 06:41:10] 2026-01-09 05:40:26,879 | INFO     | pilot state: finished 
[2026-01-09 06:41:10] 2026-01-09 05:40:26,879 | INFO     | transexitcode: 0
[2026-01-09 06:41:10] 2026-01-09 05:40:26,879 | INFO     | exeerrorcode: 0
[2026-01-09 06:41:10] 2026-01-09 05:40:26,879 | INFO     | exeerrordiag: 
[2026-01-09 06:41:10] 2026-01-09 05:40:26,879 | INFO     | exitcode: 0
[2026-01-09 06:41:10] 2026-01-09 05:40:26,879 | INFO     | exitmsg: OK
[2026-01-09 06:41:10] 2026-01-09 05:40:26,879 | INFO     | cpuconsumptiontime: 81730 s
[2026-01-09 06:41:10] 2026-01-09 05:40:26,879 | INFO     | nevents: 400
[2026-01-09 06:41:10] 2026-01-09 05:40:26,879 | INFO     | neventsw: 0
[2026-01-09 06:41:10] 2026-01-09 05:40:26,879 | INFO     | pid: 17223
[2026-01-09 06:41:10] 2026-01-09 05:40:26,880 | INFO     | pgrp: 17223
[2026-01-09 06:41:10] 2026-01-09 05:40:26,880 | INFO     | corecount: 8
[2026-01-09 06:41:10] 2026-01-09 05:40:26,880 | INFO     | event service: False
[2026-01-09 06:41:10] 2026-01-09 05:40:26,880 | INFO     | sizes: {0: 2283744, 1: 2283999, 12: 2283999, 23: 2284027, 33: 2284055, 44: 2284111, 55: 2284267, 66: 2284295, 76: 2284323, 87: 2284379, 98: 2284407, 109: 2284715, 
[2026-01-09 06:41:10] 2026-01-09 05:40:26,880 | INFO     | --------------------------------------------------
[2026-01-09 06:41:10] 2026-01-09 05:40:26,880 | INFO     | 
[2026-01-09 06:41:10] 2026-01-09 05:40:26,880 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2026-01-09 06:41:10] 2026-01-09 05:40:26,906 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,906 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,906 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,906 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,906 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,907 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,907 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,907 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,907 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,907 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,907 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,907 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,907 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,907 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,907 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,908 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,908 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,908 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 06:41:10] 2026-01-09 05:40:26,908 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,908 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 06:41:10] 2026-01-09 05:40:26,908 | INFO     | job 6963147252 has completed (purged errors)
[2026-01-09 06:41:10] 2026-01-09 05:40:26,908 | INFO     | overall cleanup function is called
[2026-01-09 06:41:10] 2026-01-09 05:40:27,916 | INFO     | --- collectZombieJob: --- 10, [17223]
[2026-01-09 06:41:10] 2026-01-09 05:40:27,917 | INFO     | zombie collector waiting for pid 17223
[2026-01-09 06:41:10] 2026-01-09 05:40:27,917 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 06:41:10] 2026-01-09 05:40:27,917 | INFO     | collected zombie processes
[2026-01-09 06:41:10] 2026-01-09 05:40:27,917 | INFO     | will attempt to kill all subprocesses of pid=17223
[2026-01-09 06:41:10] 2026-01-09 05:40:27,979 | INFO     | process IDs to be killed: [17223] (in reverse order)
[2026-01-09 06:41:10] 2026-01-09 05:40:28,028 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 06:41:10] 2026-01-09 05:40:28,028 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 06:41:10] 2026-01-09 05:40:28,031 | INFO     | did not find any defunct processes belonging to 17223
[2026-01-09 06:41:10] 2026-01-09 05:40:28,032 | INFO     | did not find any defunct processes belonging to 17223
[2026-01-09 06:41:10] 2026-01-09 05:40:28,032 | INFO     | ready for new job
[2026-01-09 06:41:10] 2026-01-09 05:40:28,033 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 06:41:10] 2026-01-09 05:40:28,035 | INFO     | ***************************************
[2026-01-09 06:41:10] 2026-01-09 05:40:28,035 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 06:41:10] 2026-01-09 05:40:28,035 | INFO     | ***************************************
[2026-01-09 06:41:10] 2026-01-09 05:40:28,035 | INFO     | 
[2026-01-09 06:41:10] 2026-01-09 05:40:28,036 | INFO     | pilot is running in a VM
[2026-01-09 06:41:10] 2026-01-09 05:40:28,036 | INFO     | architecture information:
[2026-01-09 06:41:10] 2026-01-09 05:40:28,036 | INFO     | executing command: cat /etc/os-release
[2026-01-09 06:41:10] 2026-01-09 05:40:28,055 | INFO     | cat /etc/os-release:
[2026-01-09 06:41:10] NAME="CentOS Linux"
[2026-01-09 06:41:10] VERSION="7 (Core)"
[2026-01-09 06:41:10] ID="centos"
[2026-01-09 06:41:10] ID_LIKE="rhel fedora"
[2026-01-09 06:41:10] VERSION_ID="7"
[2026-01-09 06:41:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 06:41:10] ANSI_COLOR="0;31"
[2026-01-09 06:41:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 06:41:10] HOME_URL="https://www.centos.org/"
[2026-01-09 06:41:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 06:41:10] 
[2026-01-09 06:41:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 06:41:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 06:41:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 06:41:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 06:41:10] 
[2026-01-09 06:41:10] 2026-01-09 05:40:28,056 | INFO     | ***************************************
[2026-01-09 06:41:10] 2026-01-09 05:40:28,559 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2026-01-09 06:41:10] 2026-01-09 05:40:28,579 | INFO     | sufficient remaining disk space (498283315200 B)
[2026-01-09 06:41:10] 2026-01-09 05:40:28,580 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 06:41:10] 2026-01-09 05:40:28,580 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 06:41:10] 2026-01-09 05:40:28,580 | INFO     | update_server=False
[2026-01-09 06:41:10] 2026-01-09 05:40:28,580 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 06:41:10] 2026-01-09 05:40:28,581 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 06:41:10] 2026-01-09 05:40:28,581 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 06:41:10] 2026-01-09 05:40:28,582 | INFO     | aborting loop
[2026-01-09 06:41:10] 2026-01-09 05:40:28,796 | INFO     | all job control threads have been joined
[2026-01-09 06:41:10] 2026-01-09 05:40:29,112 | INFO     | all payload control threads have been joined
[2026-01-09 06:41:10] 2026-01-09 05:40:29,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 06:41:10] 2026-01-09 05:40:29,508 | INFO     | all data control threads have been joined
[2026-01-09 06:41:10] 2026-01-09 05:40:29,586 | INFO     | [job] retrieve thread has finished
[2026-01-09 06:41:10] 2026-01-09 05:40:29,588 | INFO     | [job] queue monitor thread has finished
[2026-01-09 06:41:10] 2026-01-09 05:40:29,588 | INFO     | [job] job monitor thread has finished
[2026-01-09 06:41:10] 2026-01-09 05:40:29,699 | INFO     | [payload] validate_post thread has finished
[2026-01-09 06:41:10] 2026-01-09 05:40:29,802 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 06:41:10] 2026-01-09 05:40:29,803 | INFO     | [job] control thread has finished
[2026-01-09 06:41:10] 2026-01-09 05:40:29,931 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 06:41:10] 2026-01-09 05:40:30,118 | INFO     | [payload] control thread has finished
[2026-01-09 06:41:10] 2026-01-09 05:40:30,159 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 06:41:10] 2026-01-09 05:40:30,514 | INFO     | [data] control thread has finished
[2026-01-09 06:41:10] 2026-01-09 05:40:30,573 | INFO     | [data] copytool_in thread has finished
[2026-01-09 06:41:10] 2026-01-09 05:40:30,773 | INFO     | [payload] failed_post thread has finished
[2026-01-09 06:41:10] 2026-01-09 05:40:30,797 | INFO     | [job] validate thread has finished
[2026-01-09 06:41:10] 2026-01-09 05:40:30,920 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 06:41:10] 2026-01-09 05:40:31,441 | INFO     | [data] copytool_out thread has finished
[2026-01-09 06:41:10] 2026-01-09 05:40:34,926 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 06:41:10] 2026-01-09 05:40:39,270 | INFO     | job.realtimelogging is not enabled
[2026-01-09 06:41:10] 2026-01-09 05:40:40,276 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 06:41:10] 2026-01-09 05:40:57,558 | INFO     | 13437s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-09 06:41:10] 2026-01-09 05:40:58,641 | INFO     | PID=10699 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 06:41:10] 2026-01-09 05:40:58,642 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 06:41:10] 2026-01-09 05:40:58,642 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 06:41:10] 2026-01-09 05:40:58,642 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 06:41:10] 2026-01-09 05:41:03,770 | INFO     | [monitor] cgroup control has ended
[2026-01-09 06:41:10] 2026-01-09 05:41:05,091 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140045955417920)>', '<ExcThread(monitor, started 140045361067776)>']
[2026-01-09 06:41:10] 2026-01-09 05:41:05,678 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 06:41:10] 2026-01-09 05:41:05,679 | INFO     | [monitor] control thread has ended
[2026-01-09 06:41:10] 2026-01-09 05:41:10,106 | INFO     | all workflow threads have been joined
[2026-01-09 06:41:10] 2026-01-09 05:41:10,106 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 06:41:10] 2026-01-09 05:41:10,107 | INFO     | traces error code: 0
[2026-01-09 06:41:10] 2026-01-09 05:41:10,107 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 06:41:10] 2026-01-09 05:41:10,268 [wrapper] ==== pilot stdout END ====
[2026-01-09 06:41:10] 2026-01-09 05:41:10,274 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 06:41:10] 2026-01-09 05:41:10,281 [wrapper] pilotpid: 10699
[2026-01-09 06:41:10] 2026-01-09 05:41:10,285 [wrapper] Pilot exit status: 0
[2026-01-09 06:41:10] 2026-01-09 05:41:10,306 [wrapper] pandaids: 6963147252
[2026-01-09 06:41:10] 2026-01-09 05:41:10,350 [wrapper] cleanup supervisor_pilot  6989 10700
[2026-01-09 06:41:10] 2026-01-09 05:41:10,359 [wrapper] Test setup, not cleaning
[2026-01-09 06:41:10] 2026-01-09 05:41:10,365 [wrapper] apfmon messages muted
[2026-01-09 06:41:10] 2026-01-09 05:41:10,370 [wrapper] ==== wrapper stdout END ====
[2026-01-09 06:41:10] 2026-01-09 05:41:10,374 [wrapper] ==== wrapper stderr END ====
[2026-01-09 06:41:10]  *** Error codes and diagnostics ***
[2026-01-09 06:41:10]     "exeErrorCode": 0,
[2026-01-09 06:41:10]     "exeErrorDiag": "",
[2026-01-09 06:41:10]     "pilotErrorCode": 0,
[2026-01-09 06:41:10]     "pilotErrorDiag": "",
[2026-01-09 06:41:10]  *** Listing of results directory ***
[2026-01-09 06:41:10] total 446280
[2026-01-09 06:41:10] -rw-r--r--. 1 boinc boinc    579449 Jan  8 16:02 pilot3.tar.gz
[2026-01-09 06:41:10] -rwx------. 1 boinc boinc     36322 Jan  8 16:06 runpilot2-wrapper.sh
[2026-01-09 06:41:10] -rw-r--r--. 1 boinc boinc      5112 Jan  8 16:07 queuedata.json
[2026-01-09 06:41:10] -rw-r--r--. 1 boinc boinc       100 Jan  9 02:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 06:41:10] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 02:51 run_atlas
[2026-01-09 06:41:10] -rw-r--r--. 1 boinc boinc       105 Jan  9 02:51 job.xml
[2026-01-09 06:41:10] -rw-r--r--. 2 boinc boinc 223787528 Jan  9 02:52 EVNT.47898824._001086.pool.root.1
[2026-01-09 06:41:10] -rw-r--r--. 2 boinc boinc     15847 Jan  9 02:52 start_atlas.sh
[2026-01-09 06:41:10] drwxrwx--x. 2 boinc boinc        68 Jan  9 02:52 shared
[2026-01-09 06:41:10] -rw-r--r--. 2 boinc boinc    592397 Jan  9 02:52 input.tar.gz
[2026-01-09 06:41:10] -rw-r--r--. 1 boinc boinc      6391 Jan  9 02:52 init_data.xml
[2026-01-09 06:41:10] -rw-r--r--. 1 boinc boinc         0 Jan  9 02:52 boinc_lockfile
[2026-01-09 06:41:10] -rw-r--r--. 1 boinc boinc      2519 Jan  9 02:52 pandaJob.out
[2026-01-09 06:41:10] -rw-------. 1 boinc boinc    989821 Jan  9 02:56 agis_schedconf.cvmfs.json
[2026-01-09 06:41:10] drwx------. 5 boinc boinc      4096 Jan  9 02:56 pilot3
[2026-01-09 06:41:10] -rw-------. 1 boinc boinc 224820803 Jan  9 06:39 HITS.47898826._027447.pool.root.1
[2026-01-09 06:41:10] -rw-r--r--. 1 boinc boinc       531 Jan  9 06:39 boinc_task_state.xml
[2026-01-09 06:41:10] -rw-------. 1 boinc boinc        95 Jan  9 06:40 pilot_heartbeat.json
[2026-01-09 06:41:10] -rw-------. 1 boinc boinc      1019 Jan  9 06:40 memory_monitor_summary.json
[2026-01-09 06:41:10] -rw-------. 1 boinc boinc   1516240 Jan  9 06:40 agis_ddmendpoints.agis.ALL.json
[2026-01-09 06:41:10] -rw-------. 1 boinc boinc    457712 Jan  9 06:40 log.47898826._027447.job.log.tgz.1
[2026-01-09 06:41:10] -rw-------. 1 boinc boinc      7787 Jan  9 06:40 heartbeat.json
[2026-01-09 06:41:10] -rw-r--r--. 1 boinc boinc      8192 Jan  9 06:40 boinc_mmap_file
[2026-01-09 06:41:10] -rw-r--r--. 1 boinc boinc        28 Jan  9 06:40 wrapper_checkpoint.txt
[2026-01-09 06:41:10] -rw-------. 1 boinc boinc      4998 Jan  9 06:41 pilotlog.txt
[2026-01-09 06:41:10] -rw-------. 1 boinc boinc   1783250 Jan  9 06:41 log.47898826._027447.job.log.1
[2026-01-09 06:41:10] -rw-------. 1 boinc boinc       357 Jan  9 06:41 output.list
[2026-01-09 06:41:10] -rw-r--r--. 1 boinc boinc       620 Jan  9 06:41 runtime_log
[2026-01-09 06:41:10] -rw-------. 1 boinc boinc   2263040 Jan  9 06:41 result.tar.gz
[2026-01-09 06:41:10] -rw-r--r--. 1 boinc boinc      8833 Jan  9 06:41 runtime_log.err
[2026-01-09 06:41:10] -rw-------. 1 boinc boinc       657 Jan  9 06:41 NKeNDmBm6x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5cfKDmawcJXo.diag
[2026-01-09 06:41:10] -rw-r--r--. 1 boinc boinc     20779 Jan  9 06:41 stderr.txt
[2026-01-09 06:41:10] HITS file was successfully produced:
[2026-01-09 06:41:10] -rw-------. 1 boinc boinc 224820803 Jan  9 06:39 shared/HITS.pool.root.1
[2026-01-09 06:41:10]  *** Contents of shared directory: ***
[2026-01-09 06:41:10] total 440904
[2026-01-09 06:41:10] -rw-r--r--. 2 boinc boinc 223787528 Jan  9 02:52 ATLAS.root_0
[2026-01-09 06:41:10] -rw-r--r--. 2 boinc boinc     15847 Jan  9 02:52 start_atlas.sh
[2026-01-09 06:41:10] -rw-r--r--. 2 boinc boinc    592397 Jan  9 02:52 input.tar.gz
[2026-01-09 06:41:10] -rw-------. 1 boinc boinc 224820803 Jan  9 06:39 HITS.pool.root.1
[2026-01-09 06:41:10] -rw-------. 1 boinc boinc   2263040 Jan  9 06:41 result.tar.gz
06:41:12 (6949): run_atlas exited; CPU time 81861.425901
06:41:12 (6949): called boinc_finish(0)

</stderr_txt>
]]>

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