Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:37:32 (6748): wrapper (7.7.26015): starting
14:37:32 (6748): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 14:37:32] Arguments: --nthreads 12
[2026-01-08 14:37:32] Threads: 12
[2026-01-08 14:37:32] Checking for CVMFS
[2026-01-08 14:37:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 14:37:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 14:37:32] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 14:37:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 14:37:33] 2.11.2.0 3009 135297 97288 154918 0 59 17191072 20275201 1 130560 0 48572862 99.877 8059566 39457 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 14:37:33] CVMFS is ok
[2026-01-08 14:37:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 14:37:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 14:37:33] Further information can be found at the LHC@home message board.
[2026-01-08 14:37:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 14:37:33] Checking for apptainer binary...
[2026-01-08 14:37:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 14:37:33] Running /usr/bin/apptainer --version
[2026-01-08 14:37:33] apptainer version 1.3.2-1.el7
[2026-01-08 14:37:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 14:37:34] c-115-42.aglt2.org
[2026-01-08 14:37:34] apptainer works
[2026-01-08 14:37:34] Set ATHENA_PROC_NUMBER=12
[2026-01-08 14:37:34] Set ATHENA_CORE_NUMBER=12
[2026-01-08 14:37:34] Starting ATLAS job with PandaID=6963147090
[2026-01-08 14:37:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 16:15:19]  *** The last 200 lines of the pilot log: ***
[2026-01-08 16:15:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-08 16:15:19]  replicas=None
[2026-01-08 16:15:19]  scope=mc23_13p6TeV
[2026-01-08 16:15:19]  status=None
[2026-01-08 16:15:19]  status_code=0
[2026-01-08 16:15:19]  storage_token=
[2026-01-08 16:15:19]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6963147090/log.47898826._027392.job.log.tgz.1
[2026-01-08 16:15:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7d/dd/log.47898826._027392.job.log.tgz.1
[2026-01-08 16:15:19]  workdir=None
[2026-01-08 16:15:19] ]
[2026-01-08 16:15:19] 2026-01-08 21:14:38,697 | INFO     | transferring file log.47898826._027392.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963147090/log.47898826._027392.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-08 16:15:19] 2026-01-08 21:14:38,697 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963147090/log.47898826._027392.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._027392.job
[2026-01-08 16:15:19] 2026-01-08 21:14:38,721 | INFO     | adding to output.list: log.47898826._027392.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7d/dd/log.47898826._027392.job.log.tg
[2026-01-08 16:15:19] 2026-01-08 21:14:38,722 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-08 16:15:19] 2026-01-08 21:14:38,723 | INFO     | summary of transferred files:
[2026-01-08 16:15:19] 2026-01-08 21:14:38,723 | INFO     |  -- lfn=log.47898826._027392.job.log.tgz.1, status_code=0, status=transferred
[2026-01-08 16:15:19] 2026-01-08 21:14:38,723 | INFO     | stage-out finished correctly
[2026-01-08 16:15:19] 2026-01-08 21:14:40,106 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-08 16:15:19] 2026-01-08 21:14:40,158 | INFO     | time since job start (5812s) is within the limit (349056.0s)
[2026-01-08 16:15:19] 2026-01-08 21:14:40,601 | INFO     | monitor loop #433: job 0:6963147090 is in state 'finished'
[2026-01-08 16:15:19] 2026-01-08 21:14:40,601 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 16:15:19] 2026-01-08 21:14:42,168 | INFO     | time since job start (5814s) is within the limit (349056.0s)
[2026-01-08 16:15:19] 2026-01-08 21:14:42,958 | INFO     | job 6963147090 has state=finished
[2026-01-08 16:15:19] 2026-01-08 21:14:42,958 | INFO     | preparing for final server update for job 6963147090 in state='finished'
[2026-01-08 16:15:19] 2026-01-08 21:14:42,959 | INFO     | this job has now completed (state=finished)
[2026-01-08 16:15:19] 2026-01-08 21:14:42,959 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-08 16:15:19] 2026-01-08 21:14:42,959 | INFO     | log transfer has been attempted: DONE
[2026-01-08 16:15:19] 2026-01-08 21:14:42,959 | INFO     | job 6963147090 has finished - writing final server update
[2026-01-08 16:15:19] 2026-01-08 21:14:42,960 | INFO     | total number of processed events: 400 (read)
[2026-01-08 16:15:19] 2026-01-08 21:14:42,961 | INFO     | executing command: lscpu
[2026-01-08 16:15:19] 2026-01-08 21:14:42,990 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-08 16:15:19] 2026-01-08 21:14:43,104 | INFO     | monitor loop #434: job 0:6963147090 is in state 'finished'
[2026-01-08 16:15:19] 2026-01-08 21:14:43,104 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 16:15:19] 2026-01-08 21:14:44,174 | INFO     | time since job start (5816s) is within the limit (349056.0s)
[2026-01-08 16:15:19] 2026-01-08 21:14:45,607 | INFO     | monitor loop #435: job 0:6963147090 is in state 'finished'
[2026-01-08 16:15:19] 2026-01-08 21:14:45,608 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 16:15:19] 2026-01-08 21:14:46,179 | INFO     | time since job start (5818s) is within the limit (349056.0s)
[2026-01-08 16:15:19] 2026-01-08 21:14:47,295 | INFO     | PID=11104 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 16:15:19] 2026-01-08 21:14:47,647 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-08 16:15:19] 2026-01-08 21:14:47,651 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2026-01-08 16:15:19] 2026-01-08 21:14:47,653 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963147090/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 16:15:19] 2026-01-08 21:14:47,654 | INFO     | extracted standard info from prmon json
[2026-01-08 16:15:19] 2026-01-08 21:14:47,654 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 16:15:19] 2026-01-08 21:14:47,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 16:15:19] 2026-01-08 21:14:47,655 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 16:15:19] 2026-01-08 21:14:47,655 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 16:15:19] 2026-01-08 21:14:47,657 | INFO     | fitting pss+swap vs Time
[2026-01-08 16:15:19] 2026-01-08 21:14:47,657 | INFO     | sum of square deviations: 211285822.0
[2026-01-08 16:15:19] 2026-01-08 21:14:47,657 | INFO     | sum of deviations: -11965523929.999998
[2026-01-08 16:15:19] 2026-01-08 21:14:47,658 | INFO     | mean x: 1767904055.5
[2026-01-08 16:15:19] 2026-01-08 21:14:47,658 | INFO     | mean y: 2785124.8636363638
[2026-01-08 16:15:19] 2026-01-08 21:14:47,658 | INFO     | intersect: 100122604248.50221
[2026-01-08 16:15:19] 2026-01-08 21:14:47,658 | INFO     | chi2: 0.10822658265712654
[2026-01-08 16:15:19] 2026-01-08 21:14:47,658 | INFO     | current memory leak: -56.63 B/s (using 88 data points, chi2=0.11)
[2026-01-08 16:15:19] 2026-01-08 21:14:47,658 | INFO     | could have reported an average CPU frequency of 2255 MHz (7 samples)
[2026-01-08 16:15:19] 2026-01-08 21:14:47,659 | INFO     | ..............................
[2026-01-08 16:15:19] 2026-01-08 21:14:47,659 | INFO     | . Timing measurements:
[2026-01-08 16:15:19] 2026-01-08 21:14:47,659 | INFO     | . get job = 0 s
[2026-01-08 16:15:19] 2026-01-08 21:14:47,659 | INFO     | . initial setup = 2 s
[2026-01-08 16:15:19] 2026-01-08 21:14:47,659 | INFO     | . payload setup = 6 s
[2026-01-08 16:15:19] 2026-01-08 21:14:47,659 | INFO     | . stage-in = 0 s
[2026-01-08 16:15:19] 2026-01-08 21:14:47,659 | INFO     | . payload execution = 5782 s
[2026-01-08 16:15:19] 2026-01-08 21:14:47,659 | INFO     | . stage-out = 0 s
[2026-01-08 16:15:19] 2026-01-08 21:14:47,659 | INFO     | . log creation = 0 s
[2026-01-08 16:15:19] 2026-01-08 21:14:47,659 | INFO     | ..............................
[2026-01-08 16:15:19] 2026-01-08 21:14:47,789 | INFO     | 
[2026-01-08 16:15:19] 2026-01-08 21:14:47,789 | INFO     | job summary report
[2026-01-08 16:15:19] 2026-01-08 21:14:47,789 | INFO     | --------------------------------------------------
[2026-01-08 16:15:19] 2026-01-08 21:14:47,789 | INFO     | PanDA job id: 6963147090
[2026-01-08 16:15:19] 2026-01-08 21:14:47,789 | INFO     | task id: 47898826
[2026-01-08 16:15:19] 2026-01-08 21:14:47,790 | INFO     | errors: (none)
[2026-01-08 16:15:19] 2026-01-08 21:14:47,790 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 16:15:19] 2026-01-08 21:14:47,790 | INFO     | pilot state: finished 
[2026-01-08 16:15:19] 2026-01-08 21:14:47,790 | INFO     | transexitcode: 0
[2026-01-08 16:15:19] 2026-01-08 21:14:47,790 | INFO     | exeerrorcode: 0
[2026-01-08 16:15:19] 2026-01-08 21:14:47,790 | INFO     | exeerrordiag: 
[2026-01-08 16:15:19] 2026-01-08 21:14:47,791 | INFO     | exitcode: 0
[2026-01-08 16:15:19] 2026-01-08 21:14:47,791 | INFO     | exitmsg: OK
[2026-01-08 16:15:19] 2026-01-08 21:14:47,791 | INFO     | cpuconsumptiontime: 62741 s
[2026-01-08 16:15:19] 2026-01-08 21:14:47,791 | INFO     | nevents: 400
[2026-01-08 16:15:19] 2026-01-08 21:14:47,791 | INFO     | neventsw: 0
[2026-01-08 16:15:19] 2026-01-08 21:14:47,791 | INFO     | pid: 17518
[2026-01-08 16:15:19] 2026-01-08 21:14:47,792 | INFO     | pgrp: 17518
[2026-01-08 16:15:19] 2026-01-08 21:14:47,792 | INFO     | corecount: 12
[2026-01-08 16:15:19] 2026-01-08 21:14:47,792 | INFO     | event service: False
[2026-01-08 16:15:19] 2026-01-08 21:14:47,792 | INFO     | sizes: {0: 2283743, 1: 2283998, 6: 2284260, 12: 2284288, 5793: 2310956, 5794: 2319954, 5796: 2320138, 5803: 2320332}
[2026-01-08 16:15:19] 2026-01-08 21:14:47,792 | INFO     | --------------------------------------------------
[2026-01-08 16:15:19] 2026-01-08 21:14:47,792 | INFO     | 
[2026-01-08 16:15:19] 2026-01-08 21:14:47,793 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 16:15:19] 2026-01-08 21:14:47,818 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,818 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,818 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,819 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,819 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,819 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,819 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,819 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,820 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,820 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,820 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,820 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,820 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,820 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,821 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,821 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,821 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,821 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 16:15:19] 2026-01-08 21:14:47,821 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,821 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 16:15:19] 2026-01-08 21:14:47,822 | INFO     | job 6963147090 has completed (purged errors)
[2026-01-08 16:15:19] 2026-01-08 21:14:47,822 | INFO     | overall cleanup function is called
[2026-01-08 16:15:19] 2026-01-08 21:14:48,830 | INFO     | --- collectZombieJob: --- 10, [17518]
[2026-01-08 16:15:19] 2026-01-08 21:14:48,830 | INFO     | zombie collector waiting for pid 17518
[2026-01-08 16:15:19] 2026-01-08 21:14:48,831 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 16:15:19] 2026-01-08 21:14:48,831 | INFO     | collected zombie processes
[2026-01-08 16:15:19] 2026-01-08 21:14:48,831 | INFO     | will attempt to kill all subprocesses of pid=17518
[2026-01-08 16:15:19] 2026-01-08 21:14:48,917 | INFO     | process IDs to be killed: [17518] (in reverse order)
[2026-01-08 16:15:19] 2026-01-08 21:14:48,968 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 16:15:19] 2026-01-08 21:14:48,968 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 16:15:19] 2026-01-08 21:14:48,971 | INFO     | did not find any defunct processes belonging to 17518
[2026-01-08 16:15:19] 2026-01-08 21:14:48,974 | INFO     | did not find any defunct processes belonging to 17518
[2026-01-08 16:15:19] 2026-01-08 21:14:48,974 | INFO     | ready for new job
[2026-01-08 16:15:19] 2026-01-08 21:14:48,974 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 16:15:19] 2026-01-08 21:14:48,975 | INFO     | ***************************************
[2026-01-08 16:15:19] 2026-01-08 21:14:48,975 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 16:15:19] 2026-01-08 21:14:48,976 | INFO     | ***************************************
[2026-01-08 16:15:19] 2026-01-08 21:14:48,976 | INFO     | 
[2026-01-08 16:15:19] 2026-01-08 21:14:48,976 | INFO     | architecture information:
[2026-01-08 16:15:19] 2026-01-08 21:14:48,977 | INFO     | executing command: cat /etc/os-release
[2026-01-08 16:15:19] 2026-01-08 21:14:48,993 | INFO     | cat /etc/os-release:
[2026-01-08 16:15:19] NAME="CentOS Linux"
[2026-01-08 16:15:19] VERSION="7 (Core)"
[2026-01-08 16:15:19] ID="centos"
[2026-01-08 16:15:19] ID_LIKE="rhel fedora"
[2026-01-08 16:15:19] VERSION_ID="7"
[2026-01-08 16:15:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 16:15:19] ANSI_COLOR="0;31"
[2026-01-08 16:15:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 16:15:19] HOME_URL="https://www.centos.org/"
[2026-01-08 16:15:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 16:15:19] 
[2026-01-08 16:15:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 16:15:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 16:15:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 16:15:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 16:15:19] 
[2026-01-08 16:15:19] 2026-01-08 21:14:48,993 | INFO     | ***************************************
[2026-01-08 16:15:19] 2026-01-08 21:14:49,496 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 16:15:19] 2026-01-08 21:14:49,513 | INFO     | sufficient remaining disk space (18528337920 B)
[2026-01-08 16:15:19] 2026-01-08 21:14:49,513 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 16:15:19] 2026-01-08 21:14:49,513 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 16:15:19] 2026-01-08 21:14:49,513 | INFO     | update_server=False
[2026-01-08 16:15:19] 2026-01-08 21:14:49,513 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 16:15:19] 2026-01-08 21:14:49,514 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 16:15:19] 2026-01-08 21:14:49,514 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 16:15:19] 2026-01-08 21:14:49,514 | INFO     | aborting loop
[2026-01-08 16:15:19] 2026-01-08 21:14:49,515 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 16:15:19] 2026-01-08 21:14:49,617 | INFO     | all data control threads have been joined
[2026-01-08 16:15:19] 2026-01-08 21:14:49,917 | INFO     | all payload control threads have been joined
[2026-01-08 16:15:19] 2026-01-08 21:14:50,515 | INFO     | [job] queue monitor thread has finished
[2026-01-08 16:15:19] 2026-01-08 21:14:50,519 | INFO     | [job] retrieve thread has finished
[2026-01-08 16:15:19] 2026-01-08 21:14:50,520 | INFO     | [job] job monitor thread has finished
[2026-01-08 16:15:19] 2026-01-08 21:14:50,617 | INFO     | [payload] failed_post thread has finished
[2026-01-08 16:15:19] 2026-01-08 21:14:50,622 | INFO     | [data] control thread has finished
[2026-01-08 16:15:19] 2026-01-08 21:14:50,690 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 16:15:19] 2026-01-08 21:14:50,720 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 16:15:19] 2026-01-08 21:14:50,848 | INFO     | all job control threads have been joined
[2026-01-08 16:15:19] 2026-01-08 21:14:50,880 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 16:15:19] 2026-01-08 21:14:50,923 | INFO     | [payload] control thread has finished
[2026-01-08 16:15:19] 2026-01-08 21:14:51,013 | INFO     | [data] copytool_in thread has finished
[2026-01-08 16:15:19] 2026-01-08 21:14:51,521 | INFO     | [data] copytool_out thread has finished
[2026-01-08 16:15:19] 2026-01-08 21:14:51,710 | INFO     | [payload] validate_post thread has finished
[2026-01-08 16:15:19] 2026-01-08 21:14:51,854 | INFO     | [job] control thread has finished
[2026-01-08 16:15:19] 2026-01-08 21:14:51,903 | INFO     | [job] validate thread has finished
[2026-01-08 16:15:19] 2026-01-08 21:14:51,904 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 16:15:19] 2026-01-08 21:14:54,696 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 16:15:19] 2026-01-08 21:14:57,652 | INFO     | [monitor] cgroup control has ended
[2026-01-08 16:15:19] 2026-01-08 21:15:00,095 | INFO     | job.realtimelogging is not enabled
[2026-01-08 16:15:19] 2026-01-08 21:15:01,101 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 16:15:19] 2026-01-08 21:15:01,947 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140175955142464)>', '<ExcThread(monitor, started 140175359330048)>']
[2026-01-08 16:15:19] 2026-01-08 21:15:06,955 | INFO     | all workflow threads have been joined
[2026-01-08 16:15:19] 2026-01-08 21:15:06,955 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 16:15:19] 2026-01-08 21:15:06,955 | INFO     | traces error code: 0
[2026-01-08 16:15:19] 2026-01-08 21:15:06,956 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 16:15:19] 2026-01-08 21:15:19,473 | INFO     | PID=11104 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 16:15:19] 2026-01-08 21:15:19,474 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 16:15:19] 2026-01-08 21:15:19,474 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 16:15:19] 2026-01-08 21:15:19,474 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 16:15:19] 2026-01-08 21:15:19,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 16:15:19] 2026-01-08 21:15:19,474 | INFO     | [monitor] control thread has ended
[2026-01-08 16:15:19] 2026-01-08 21:15:19,574 [wrapper] ==== pilot stdout END ====
[2026-01-08 16:15:19] 2026-01-08 21:15:19,578 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 16:15:19] 2026-01-08 21:15:19,581 [wrapper] pilotpid: 11104
[2026-01-08 16:15:19] 2026-01-08 21:15:19,585 [wrapper] Pilot exit status: 0
[2026-01-08 16:15:19] 2026-01-08 21:15:19,600 [wrapper] pandaids: 6963147090
[2026-01-08 16:15:19] 2026-01-08 21:15:19,639 [wrapper] cleanup supervisor_pilot 27959 11105
[2026-01-08 16:15:19] 2026-01-08 21:15:19,643 [wrapper] Test setup, not cleaning
[2026-01-08 16:15:19] 2026-01-08 21:15:19,647 [wrapper] apfmon messages muted
[2026-01-08 16:15:19] 2026-01-08 21:15:19,650 [wrapper] ==== wrapper stdout END ====
[2026-01-08 16:15:19] 2026-01-08 21:15:19,654 [wrapper] ==== wrapper stderr END ====
[2026-01-08 16:15:19]  *** Error codes and diagnostics ***
[2026-01-08 16:15:19]     "exeErrorCode": 0,
[2026-01-08 16:15:19]     "exeErrorDiag": "",
[2026-01-08 16:15:19]     "pilotErrorCode": 0,
[2026-01-08 16:15:19]     "pilotErrorDiag": "",
[2026-01-08 16:15:19]  *** Listing of results directory ***
[2026-01-08 16:15:19] total 448456
[2026-01-08 16:15:19] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 10:02 pilot3.tar.gz
[2026-01-08 16:15:19] -rwx------ 1 boincer umatlas     36322 Jan  8 10:06 runpilot2-wrapper.sh
[2026-01-08 16:15:19] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 10:07 queuedata.json
[2026-01-08 16:15:19] -rw-r--r-- 1 boincer umatlas       100 Jan  8 14:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 16:15:19] -rwxr-xr-x 1 boincer umatlas      7986 Jan  8 14:37 run_atlas
[2026-01-08 16:15:19] -rw-r--r-- 1 boincer umatlas       105 Jan  8 14:37 job.xml
[2026-01-08 16:15:19] -rw-r--r-- 2 boincer umatlas 225348838 Jan  8 14:37 EVNT.47898824._001080.pool.root.1
[2026-01-08 16:15:19] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 14:37 start_atlas.sh
[2026-01-08 16:15:19] drwxrwx--x 2 boincer umatlas      4096 Jan  8 14:37 shared
[2026-01-08 16:15:19] -rw-r--r-- 2 boincer umatlas    592397 Jan  8 14:37 input.tar.gz
[2026-01-08 16:15:19] -rw-r--r-- 1 boincer umatlas         0 Jan  8 14:37 boinc_lockfile
[2026-01-08 16:15:19] -rw-r--r-- 1 boincer umatlas      2519 Jan  8 14:37 pandaJob.out
[2026-01-08 16:15:19] -rw------- 1 boincer umatlas        57 Jan  8 14:37 setup.sh.local
[2026-01-08 16:15:19] -rw------- 1 boincer umatlas    989845 Jan  8 14:37 agis_schedconf.cvmfs.json
[2026-01-08 16:15:19] -rw------- 1 boincer umatlas   1516240 Jan  8 14:37 agis_ddmendpoints.agis.ALL.json
[2026-01-08 16:15:19] drwx------ 5 boincer umatlas      4096 Jan  8 14:37 pilot3
[2026-01-08 16:15:19] -rw-r--r-- 1 boincer umatlas      5954 Jan  8 16:13 init_data.xml
[2026-01-08 16:15:19] -rw------- 1 boincer umatlas 227473095 Jan  8 16:14 HITS.47898826._027392.pool.root.1
[2026-01-08 16:15:19] -rw------- 1 boincer umatlas      1046 Jan  8 16:14 memory_monitor_summary.json
[2026-01-08 16:15:19] -rw-r--r-- 1 boincer umatlas       529 Jan  8 16:14 boinc_task_state.xml
[2026-01-08 16:15:19] -rw------- 1 boincer umatlas    413422 Jan  8 16:14 log.47898826._027392.job.log.tgz.1
[2026-01-08 16:15:19] -rw------- 1 boincer umatlas      7848 Jan  8 16:14 heartbeat.json
[2026-01-08 16:15:19] -rw-r--r-- 1 boincer umatlas      8192 Jan  8 16:15 boinc_mmap_file
[2026-01-08 16:15:19] -rw-r--r-- 1 boincer umatlas        27 Jan  8 16:15 wrapper_checkpoint.txt
[2026-01-08 16:15:19] -rw------- 1 boincer umatlas        95 Jan  8 16:15 pilot_heartbeat.json
[2026-01-08 16:15:19] -rw------- 1 boincer umatlas       745 Jan  8 16:15 pilotlog.txt
[2026-01-08 16:15:19] -rw------- 1 boincer umatlas    831636 Jan  8 16:15 log.47898826._027392.job.log.1
[2026-01-08 16:15:19] -rw------- 1 boincer umatlas       357 Jan  8 16:15 output.list
[2026-01-08 16:15:19] -rw-r--r-- 1 boincer umatlas       620 Jan  8 16:15 runtime_log
[2026-01-08 16:15:19] -rw------- 1 boincer umatlas   1259520 Jan  8 16:15 result.tar.gz
[2026-01-08 16:15:19] -rw-r--r-- 1 boincer umatlas      9344 Jan  8 16:15 runtime_log.err
[2026-01-08 16:15:19] -rw------- 1 boincer umatlas       659 Jan  8 16:15 5oOMDmBm6x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEcfKDmfD2BKn.diag
[2026-01-08 16:15:19] -rw-r--r-- 1 boincer umatlas     22022 Jan  8 16:15 stderr.txt
[2026-01-08 16:15:19] HITS file was successfully produced:
[2026-01-08 16:15:19] -rw------- 1 boincer umatlas 227473095 Jan  8 16:14 shared/HITS.pool.root.1
[2026-01-08 16:15:19]  *** Contents of shared directory: ***
[2026-01-08 16:15:19] total 444044
[2026-01-08 16:15:19] -rw-r--r-- 2 boincer umatlas 225348838 Jan  8 14:37 ATLAS.root_0
[2026-01-08 16:15:19] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 14:37 start_atlas.sh
[2026-01-08 16:15:19] -rw-r--r-- 2 boincer umatlas    592397 Jan  8 14:37 input.tar.gz
[2026-01-08 16:15:19] -rw------- 1 boincer umatlas 227473095 Jan  8 16:14 HITS.pool.root.1
[2026-01-08 16:15:19] -rw------- 1 boincer umatlas   1259520 Jan  8 16:15 result.tar.gz
16:15:21 (6748): run_atlas exited; CPU time 62714.073302
16:15:21 (6748): called boinc_finish(0)

</stderr_txt>
]]>

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