Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:54:52 (1938783): wrapper (7.7.26015): starting
04:54:52 (1938783): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 04:54:52] Arguments: --nthreads 4
[2026-01-09 04:54:52] Threads: 4
[2026-01-09 04:54:52] Checking for CVMFS
[2026-01-09 04:54:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 04:54:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 04:54:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 04:54:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 04:54:53] 2.9.2.0 1472446 1660 85996 154929 3 57 21001616 36864001 0 130560 0 1212587 99.990 61943 3888 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 04:54:53] CVMFS is ok
[2026-01-09 04:54:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 04:54:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 04:54:53] Further information can be found at the LHC@home message board.
[2026-01-09 04:54:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 04:54:53] Checking for apptainer binary...
[2026-01-09 04:54:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 04:54:53] Running /usr/bin/apptainer --version
[2026-01-09 04:54:53] apptainer version 1.4.1-1.1
[2026-01-09 04:54:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 04:54:53] thA334
[2026-01-09 04:54:53] apptainer works
[2026-01-09 04:54:53] Set ATHENA_PROC_NUMBER=4
[2026-01-09 04:54:53] Set ATHENA_CORE_NUMBER=4
[2026-01-09 04:54:53] Starting ATLAS job with PandaID=6963146055
[2026-01-09 04:54:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 06:33:14]  *** The last 200 lines of the pilot log: ***
[2026-01-09 06:33:14] 2026-01-09 05:32:26,587 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 06:33:14] 2026-01-09 05:32:26,587 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 06:33:14] 2026-01-09 05:32:26,587 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 06:33:14] 2026-01-09 05:32:26,587 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 06:33:14] 2026-01-09 05:32:26,587 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 06:33:14] 2026-01-09 05:32:26,587 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 06:33:14] 2026-01-09 05:32:26,587 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 06:33:14] 2026-01-09 05:32:26,587 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 06:33:14] 2026-01-09 05:32:26,587 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 06:33:14] 2026-01-09 05:32:26,587 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 06:33:14] 2026-01-09 05:32:26,587 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 06:33:14] 2026-01-09 05:32:26,587 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 06:33:14] 2026-01-09 05:32:26,587 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 06:33:14] 2026-01-09 05:32:26,588 | INFO     | job 6963146055 has completed (purged errors)
[2026-01-09 06:33:14] 2026-01-09 05:32:26,588 | INFO     | overall cleanup function is called
[2026-01-09 06:33:14] 2026-01-09 05:32:27,594 | INFO     | --- collectZombieJob: --- 10, [1949168]
[2026-01-09 06:33:14] 2026-01-09 05:32:27,595 | INFO     | zombie collector waiting for pid 1949168
[2026-01-09 06:33:14] 2026-01-09 05:32:27,595 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 06:33:14] 2026-01-09 05:32:27,595 | INFO     | collected zombie processes
[2026-01-09 06:33:14] 2026-01-09 05:32:27,595 | INFO     | will attempt to kill all subprocesses of pid=1949168
[2026-01-09 06:33:14] 2026-01-09 05:32:27,639 | INFO     | process IDs to be killed: [1949168] (in reverse order)
[2026-01-09 06:33:14] 2026-01-09 05:32:27,669 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 06:33:14] 2026-01-09 05:32:27,669 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 06:33:14] 2026-01-09 05:32:27,671 | INFO     | did not find any defunct processes belonging to 1949168
[2026-01-09 06:33:14] 2026-01-09 05:32:27,672 | INFO     | did not find any defunct processes belonging to 1949168
[2026-01-09 06:33:14] 2026-01-09 05:32:27,672 | INFO     | ready for new job
[2026-01-09 06:33:14] 2026-01-09 05:32:27,672 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 06:33:14] 2026-01-09 05:32:27,673 | INFO     | ***************************************
[2026-01-09 06:33:14] 2026-01-09 05:32:27,673 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 06:33:14] 2026-01-09 05:32:27,673 | INFO     | ***************************************
[2026-01-09 06:33:14] 2026-01-09 05:32:27,673 | INFO     | 
[2026-01-09 06:33:14] 2026-01-09 05:32:27,673 | INFO     | architecture information:
[2026-01-09 06:33:14] 2026-01-09 05:32:27,673 | INFO     | executing command: cat /etc/os-release
[2026-01-09 06:33:14] 2026-01-09 05:32:27,686 | INFO     | cat /etc/os-release:
[2026-01-09 06:33:14] NAME="CentOS Linux"
[2026-01-09 06:33:14] VERSION="7 (Core)"
[2026-01-09 06:33:14] ID="centos"
[2026-01-09 06:33:14] ID_LIKE="rhel fedora"
[2026-01-09 06:33:14] VERSION_ID="7"
[2026-01-09 06:33:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 06:33:14] ANSI_COLOR="0;31"
[2026-01-09 06:33:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 06:33:14] HOME_URL="https://www.centos.org/"
[2026-01-09 06:33:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 06:33:14] 
[2026-01-09 06:33:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 06:33:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 06:33:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 06:33:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 06:33:14] 
[2026-01-09 06:33:14] 2026-01-09 05:32:27,686 | INFO     | ***************************************
[2026-01-09 06:33:14] 2026-01-09 05:32:28,189 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 06:33:14] 2026-01-09 05:32:28,206 | INFO     | sufficient remaining disk space (238036189184 B)
[2026-01-09 06:33:14] 2026-01-09 05:32:28,206 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 06:33:14] 2026-01-09 05:32:28,206 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 06:33:14] 2026-01-09 05:32:28,206 | INFO     | update_server=False
[2026-01-09 06:33:14] 2026-01-09 05:32:28,206 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 06:33:14] 2026-01-09 05:32:28,207 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 06:33:14] 2026-01-09 05:32:28,207 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 06:33:14] 2026-01-09 05:32:28,311 | INFO     | all data control threads have been joined
[2026-01-09 06:33:14] 2026-01-09 05:32:28,662 | INFO     | all payload control threads have been joined
[2026-01-09 06:33:14] 2026-01-09 05:32:28,781 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 06:33:14] 2026-01-09 05:32:28,781 | INFO     | aborting loop
[2026-01-09 06:33:14] 2026-01-09 05:32:29,212 | INFO     | [job] retrieve thread has finished
[2026-01-09 06:33:14] 2026-01-09 05:32:29,213 | INFO     | [job] queue monitor thread has finished
[2026-01-09 06:33:14] 2026-01-09 05:32:29,317 | INFO     | [data] control thread has finished
[2026-01-09 06:33:14] 2026-01-09 05:32:29,358 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 06:33:14] 2026-01-09 05:32:29,371 | INFO     | [data] copytool_in thread has finished
[2026-01-09 06:33:14] 2026-01-09 05:32:29,378 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 06:33:14] 2026-01-09 05:32:29,430 | INFO     | all job control threads have been joined
[2026-01-09 06:33:14] 2026-01-09 05:32:29,668 | INFO     | [payload] control thread has finished
[2026-01-09 06:33:14] 2026-01-09 05:32:29,787 | INFO     | [job] job monitor thread has finished
[2026-01-09 06:33:14] 2026-01-09 05:32:29,851 | INFO     | [payload] failed_post thread has finished
[2026-01-09 06:33:14] 2026-01-09 05:32:30,213 | INFO     | [data] copytool_out thread has finished
[2026-01-09 06:33:14] 2026-01-09 05:32:30,378 | INFO     | [payload] validate_post thread has finished
[2026-01-09 06:33:14] 2026-01-09 05:32:30,436 | INFO     | [job] validate thread has finished
[2026-01-09 06:33:14] 2026-01-09 05:32:30,436 | INFO     | [job] control thread has finished
[2026-01-09 06:33:14] 2026-01-09 05:32:30,503 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 06:33:14] 2026-01-09 05:32:30,525 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 06:33:14] 2026-01-09 05:32:33,385 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 06:33:14] 2026-01-09 05:32:38,356 | INFO     | job.realtimelogging is not enabled
[2026-01-09 06:33:14] 2026-01-09 05:32:39,362 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 06:33:14] 2026-01-09 05:32:59,078 | INFO     | PID=1942581 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 06:33:14] 2026-01-09 05:32:59,078 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 06:33:14] 2026-01-09 05:32:59,078 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 06:33:14] 2026-01-09 05:32:59,078 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 06:33:14] 2026-01-09 05:33:07,280 | INFO     | [monitor] cgroup control has ended
[2026-01-09 06:33:14] 2026-01-09 05:33:09,243 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139746735023936)>', '<ExcThread(monitor, started 139745787098880)>']
[2026-01-09 06:33:14] 2026-01-09 05:33:10,137 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 06:33:14] 2026-01-09 05:33:10,137 | INFO     | [monitor] control thread has ended
[2026-01-09 06:33:14] 2026-01-09 05:33:14,268 | INFO     | all workflow threads have been joined
[2026-01-09 06:33:14] 2026-01-09 05:33:14,269 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 06:33:14] 2026-01-09 05:33:14,269 | INFO     | traces error code: 0
[2026-01-09 06:33:14] 2026-01-09 05:33:14,269 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 06:33:14] 2026-01-09 05:33:14,339 [wrapper] ==== pilot stdout END ====
[2026-01-09 06:33:14] 2026-01-09 05:33:14,342 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 06:33:14] 2026-01-09 05:33:14,346 [wrapper] pilotpid: 1942581
[2026-01-09 06:33:14] 2026-01-09 05:33:14,350 [wrapper] Pilot exit status: 0
[2026-01-09 06:33:14] 2026-01-09 05:33:14,360 [wrapper] pandaids: 6963146055
[2026-01-09 06:33:14] 2026-01-09 05:33:14,383 [wrapper] cleanup supervisor_pilot 1961415 1942582
[2026-01-09 06:33:14] 2026-01-09 05:33:14,386 [wrapper] Test setup, not cleaning
[2026-01-09 06:33:14] 2026-01-09 05:33:14,390 [wrapper] apfmon messages muted
[2026-01-09 06:33:14] 2026-01-09 05:33:14,393 [wrapper] ==== wrapper stdout END ====
[2026-01-09 06:33:14] 2026-01-09 05:33:14,397 [wrapper] ==== wrapper stderr END ====
[2026-01-09 06:33:14]  *** Error codes and diagnostics ***
[2026-01-09 06:33:14]     "exeErrorCode": 0,
[2026-01-09 06:33:14]     "exeErrorDiag": "",
[2026-01-09 06:33:14]     "pilotErrorCode": 0,
[2026-01-09 06:33:14]     "pilotErrorDiag": "",
[2026-01-09 06:33:14]  *** Listing of results directory ***
[2026-01-09 06:33:14] total 443500
[2026-01-09 06:33:14] -rw-r--r-- 1 boinc boinc    579449 Jan  8 16:02 pilot3.tar.gz
[2026-01-09 06:33:14] -rwx------ 1 boinc boinc     36322 Jan  8 16:05 runpilot2-wrapper.sh
[2026-01-09 06:33:14] -rw-r--r-- 1 boinc boinc      5112 Jan  8 16:07 queuedata.json
[2026-01-09 06:33:14] -rw-r--r-- 1 boinc boinc       100 Jan  9 04:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 06:33:14] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 04:54 run_atlas
[2026-01-09 06:33:14] -rw-r--r-- 1 boinc boinc       105 Jan  9 04:54 job.xml
[2026-01-09 06:33:14] -rw-r--r-- 2 boinc boinc 225872014 Jan  9 04:54 EVNT.47898824._001044.pool.root.1
[2026-01-09 06:33:14] drwxrwx--x 2 boinc boinc      4096 Jan  9 04:54 shared
[2026-01-09 06:33:14] -rw-r--r-- 2 boinc boinc    592402 Jan  9 04:54 input.tar.gz
[2026-01-09 06:33:14] -rw-r--r-- 2 boinc boinc     15847 Jan  9 04:54 start_atlas.sh
[2026-01-09 06:33:14] -rw-r--r-- 1 boinc boinc         0 Jan  9 04:54 boinc_setup_complete
[2026-01-09 06:33:14] -rw-r--r-- 1 boinc boinc      6369 Jan  9 04:54 init_data.xml
[2026-01-09 06:33:14] -rw-r--r-- 1 boinc boinc         0 Jan  9 04:54 boinc_lockfile
[2026-01-09 06:33:14] -rw-r--r-- 1 boinc boinc      2519 Jan  9 04:54 pandaJob.out
[2026-01-09 06:33:14] -rw------- 1 boinc boinc    989771 Jan  9 04:54 agis_schedconf.cvmfs.json
[2026-01-09 06:33:14] -rw------- 1 boinc boinc   1516240 Jan  9 04:54 agis_ddmendpoints.agis.ALL.json
[2026-01-09 06:33:14] drwx------ 5 boinc boinc      4096 Jan  9 04:55 pilot3
[2026-01-09 06:33:14] -rw------- 1 boinc boinc 222095834 Jan  9 06:32 HITS.47898826._026485.pool.root.1
[2026-01-09 06:33:14] -rw-r--r-- 1 boinc boinc       529 Jan  9 06:32 boinc_task_state.xml
[2026-01-09 06:33:14] -rw------- 1 boinc boinc      1022 Jan  9 06:32 memory_monitor_summary.json
[2026-01-09 06:33:14] -rw------- 1 boinc boinc    284952 Jan  9 06:32 log.47898826._026485.job.log.tgz.1
[2026-01-09 06:33:14] -rw------- 1 boinc boinc      7756 Jan  9 06:32 heartbeat.json
[2026-01-09 06:33:14] -rw-r--r-- 1 boinc boinc      8192 Jan  9 06:32 boinc_mmap_file
[2026-01-09 06:33:14] -rw-r--r-- 1 boinc boinc        27 Jan  9 06:32 wrapper_checkpoint.txt
[2026-01-09 06:33:14] -rw------- 1 boinc boinc        95 Jan  9 06:32 pilot_heartbeat.json
[2026-01-09 06:33:14] -rw------- 1 boinc boinc      4824 Jan  9 06:33 pilotlog.txt
[2026-01-09 06:33:14] -rw------- 1 boinc boinc    850715 Jan  9 06:33 log.47898826._026485.job.log.1
[2026-01-09 06:33:14] -rw------- 1 boinc boinc       357 Jan  9 06:33 output.list
[2026-01-09 06:33:14] -rw-r--r-- 1 boinc boinc       620 Jan  9 06:33 runtime_log
[2026-01-09 06:33:14] -rw------- 1 boinc boinc   1157120 Jan  9 06:33 result.tar.gz
[2026-01-09 06:33:14] -rw-r--r-- 1 boinc boinc      8897 Jan  9 06:33 runtime_log.err
[2026-01-09 06:33:14] -rw------- 1 boinc boinc       659 Jan  9 06:33 2IkNDmMl6x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVYfKDm3cNvTn.diag
[2026-01-09 06:33:14] -rw-r--r-- 1 boinc boinc     12234 Jan  9 06:33 stderr.txt
[2026-01-09 06:33:14] HITS file was successfully produced:
[2026-01-09 06:33:14] -rw------- 1 boinc boinc 222095834 Jan  9 06:32 shared/HITS.pool.root.1
[2026-01-09 06:33:14]  *** Contents of shared directory: ***
[2026-01-09 06:33:14] total 439208
[2026-01-09 06:33:14] -rw-r--r-- 2 boinc boinc 225872014 Jan  9 04:54 ATLAS.root_0
[2026-01-09 06:33:14] -rw-r--r-- 2 boinc boinc    592402 Jan  9 04:54 input.tar.gz
[2026-01-09 06:33:14] -rw-r--r-- 2 boinc boinc     15847 Jan  9 04:54 start_atlas.sh
[2026-01-09 06:33:14] -rw------- 1 boinc boinc 222095834 Jan  9 06:32 HITS.pool.root.1
[2026-01-09 06:33:14] -rw------- 1 boinc boinc   1157120 Jan  9 06:33 result.tar.gz
06:33:15 (1938783): run_atlas exited; CPU time 22304.665792
06:33:15 (1938783): called boinc_finish(0)

</stderr_txt>
]]>

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