Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:19:58 (98561): wrapper (7.7.26015): starting
17:19:58 (98561): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 17:19:58] Arguments: --nthreads 8
[2026-01-08 17:19:58] Threads: 8
[2026-01-08 17:19:58] Checking for CVMFS
[2026-01-08 17:19:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 17:19:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 17:19:58] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 17:19:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 17:19:58] 2.13.3.0 5695 22960 177608 154922 2 158 27855806 40960000 9048 16776704 0 17439185 99.694 16343752 47274 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 17:19:58] CVMFS is ok
[2026-01-08 17:19:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 17:19:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 17:19:58] Further information can be found at the LHC@home message board.
[2026-01-08 17:19:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 17:19:58] Checking for apptainer binary...
[2026-01-08 17:19:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 17:19:58] Running /usr/bin/apptainer --version
[2026-01-08 17:19:58] apptainer version 1.4.5-2.el9
[2026-01-08 17:19:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 17:19:59] c-210-37-4.aglt2.org
[2026-01-08 17:19:59] apptainer works
[2026-01-08 17:19:59] Set ATHENA_PROC_NUMBER=8
[2026-01-08 17:19:59] Set ATHENA_CORE_NUMBER=8
[2026-01-08 17:19:59] Starting ATLAS job with PandaID=6963146878
[2026-01-08 17:19:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 04:55:43]  *** The last 200 lines of the pilot log: ***
[2026-01-09 04:55:43] 2026-01-09 09:54:56,519 | INFO     | monitor loop #2425: job 0:6963146878 is in state 'finished'
[2026-01-09 04:55:43] 2026-01-09 09:54:56,524 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 04:55:43] 2026-01-09 09:54:57,152 | INFO     | time since job start (41679s) is within the limit (349056.0s)
[2026-01-09 04:55:43] 2026-01-09 09:54:59,038 | INFO     | monitor loop #2426: job 0:6963146878 is in state 'finished'
[2026-01-09 04:55:43] 2026-01-09 09:54:59,038 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 04:55:43] 2026-01-09 09:54:59,164 | INFO     | time since job start (41681s) is within the limit (349056.0s)
[2026-01-09 04:55:43] 2026-01-09 09:55:01,174 | INFO     | time since job start (41683s) is within the limit (349056.0s)
[2026-01-09 04:55:43] 2026-01-09 09:55:01,628 | INFO     | monitor loop #2427: job 0:6963146878 is in state 'finished'
[2026-01-09 04:55:43] 2026-01-09 09:55:01,899 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 04:55:43] 2026-01-09 09:55:02,049 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 04:55:43] 2026-01-09 09:55:02,070 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3007.0588749999997
[2026-01-09 04:55:43] 2026-01-09 09:55:02,147 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963146878/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 04:55:43] 2026-01-09 09:55:02,148 | INFO     | extracted standard info from prmon json
[2026-01-09 04:55:43] 2026-01-09 09:55:02,148 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 04:55:43] 2026-01-09 09:55:02,148 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 04:55:43] 2026-01-09 09:55:02,163 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 04:55:43] 2026-01-09 09:55:02,163 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 04:55:43] 2026-01-09 09:55:02,237 | INFO     | fitting pss+swap vs Time
[2026-01-09 04:55:43] 2026-01-09 09:55:02,238 | INFO     | sum of square deviations: 98368094743.35045
[2026-01-09 04:55:43] 2026-01-09 09:55:02,299 | INFO     | sum of deviations: -329243181859.9545
[2026-01-09 04:55:43] 2026-01-09 09:55:02,299 | INFO     | mean x: 1767931639.813783
[2026-01-09 04:55:43] 2026-01-09 09:55:02,300 | INFO     | mean y: 2530401.590909091
[2026-01-09 04:55:43] 2026-01-09 09:55:02,300 | INFO     | intersect: 5919890496.059189
[2026-01-09 04:55:43] 2026-01-09 09:55:02,300 | INFO     | chi2: 5.516560860962973
[2026-01-09 04:55:43] 2026-01-09 09:55:02,337 | INFO     | sum of square deviations: 96220783562.15672
[2026-01-09 04:55:43] 2026-01-09 09:55:02,430 | INFO     | sum of deviations: -109058624525.9454
[2026-01-09 04:55:43] 2026-01-09 09:55:02,430 | INFO     | mean x: 1767931487.3234859
[2026-01-09 04:55:43] 2026-01-09 09:55:02,430 | INFO     | mean y: 2546038.858197932
[2026-01-09 04:55:43] 2026-01-09 09:55:02,430 | INFO     | intersect: 2006356121.5214508
[2026-01-09 04:55:43] 2026-01-09 09:55:02,431 | INFO     | chi2: 1.995311296438269
[2026-01-09 04:55:43] 2026-01-09 09:55:02,431 | INFO     | current chi2=1.995311296438269 (change=63.83052146568783 %)
[2026-01-09 04:55:43] 2026-01-09 09:55:02,432 | INFO     | sum of square deviations: 94104919925.9982
[2026-01-09 04:55:43] 2026-01-09 09:55:02,481 | INFO     | sum of deviations: -108289421829.53725
[2026-01-09 04:55:43] 2026-01-09 09:55:02,481 | INFO     | mean x: 1767931334.8318453
[2026-01-09 04:55:43] 2026-01-09 09:55:02,481 | INFO     | mean y: 2546094.2961309524
[2026-01-09 04:55:43] 2026-01-09 09:55:02,481 | INFO     | intersect: 2036958984.0134034
[2026-01-09 04:55:43] 2026-01-09 09:55:02,495 | INFO     | chi2: 1.9947662242690956
[2026-01-09 04:55:43] 2026-01-09 09:55:02,495 | INFO     | current chi2=1.9947662242690956 (change=0.027317650641607908 %)
[2026-01-09 04:55:43] 2026-01-09 09:55:02,495 | INFO     | right removable region: 671
[2026-01-09 04:55:43] 2026-01-09 09:55:02,496 | INFO     | sum of square deviations: 96220278483.80222
[2026-01-09 04:55:43] 2026-01-09 09:55:02,526 | INFO     | sum of deviations: -430262430961.94855
[2026-01-09 04:55:43] 2026-01-09 09:55:02,526 | INFO     | mean x: 1767931792.3220088
[2026-01-09 04:55:43] 2026-01-09 09:55:02,526 | INFO     | mean y: 2537551.0502215656
[2026-01-09 04:55:43] 2026-01-09 09:55:02,526 | INFO     | intersect: 7908091793.105701
[2026-01-09 04:55:43] 2026-01-09 09:55:02,527 | INFO     | chi2: 4.1804545549130205
[2026-01-09 04:55:43] 2026-01-09 09:55:02,527 | INFO     | current chi2=4.1804545549130205 (change=24.219914177049816 %)
[2026-01-09 04:55:43] 2026-01-09 09:55:02,527 | INFO     | left removable region: 10
[2026-01-09 04:55:43] 2026-01-09 09:55:02,528 | INFO     | sum of square deviations: 89558836171.66414
[2026-01-09 04:55:43] 2026-01-09 09:55:02,560 | INFO     | sum of deviations: -212110409519.15607
[2026-01-09 04:55:43] 2026-01-09 09:55:02,560 | INFO     | mean x: 1767931609.3464448
[2026-01-09 04:55:43] 2026-01-09 09:55:02,560 | INFO     | mean y: 2553710.2102874434
[2026-01-09 04:55:43] 2026-01-09 09:55:02,560 | INFO     | intersect: 4189708363.957136
[2026-01-09 04:55:43] 2026-01-09 09:55:02,561 | INFO     | chi2: 0.6214595519840539
[2026-01-09 04:55:43] 2026-01-09 09:55:02,561 | INFO     | current memory leak: -2.37 B/s (using 661 data points, chi2=0.62)
[2026-01-09 04:55:43] 2026-01-09 09:55:02,574 | INFO     | could have reported an average CPU frequency of 3031 MHz (26 samples)
[2026-01-09 04:55:43] 2026-01-09 09:55:02,575 | INFO     | ..............................
[2026-01-09 04:55:43] 2026-01-09 09:55:02,575 | INFO     | . Timing measurements:
[2026-01-09 04:55:43] 2026-01-09 09:55:02,575 | INFO     | . get job = 0 s
[2026-01-09 04:55:43] 2026-01-09 09:55:02,575 | INFO     | . initial setup = 2 s
[2026-01-09 04:55:43] 2026-01-09 09:55:02,575 | INFO     | . payload setup = 11 s
[2026-01-09 04:55:43] 2026-01-09 09:55:02,575 | INFO     | . stage-in = 0 s
[2026-01-09 04:55:43] 2026-01-09 09:55:02,575 | INFO     | . payload execution = 41577 s
[2026-01-09 04:55:43] 2026-01-09 09:55:02,575 | INFO     | . stage-out = 9 s
[2026-01-09 04:55:43] 2026-01-09 09:55:02,575 | INFO     | . log creation = 1 s
[2026-01-09 04:55:43] 2026-01-09 09:55:02,575 | INFO     | ..............................
[2026-01-09 04:55:43] 2026-01-09 09:55:02,788 | INFO     | 
[2026-01-09 04:55:43] 2026-01-09 09:55:02,788 | INFO     | job summary report
[2026-01-09 04:55:43] 2026-01-09 09:55:02,788 | INFO     | --------------------------------------------------
[2026-01-09 04:55:43] 2026-01-09 09:55:02,788 | INFO     | PanDA job id: 6963146878
[2026-01-09 04:55:43] 2026-01-09 09:55:02,788 | INFO     | task id: 47898826
[2026-01-09 04:55:43] 2026-01-09 09:55:02,788 | INFO     | errors: (none)
[2026-01-09 04:55:43] 2026-01-09 09:55:02,788 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 04:55:43] 2026-01-09 09:55:02,788 | INFO     | pilot state: finished 
[2026-01-09 04:55:43] 2026-01-09 09:55:02,788 | INFO     | transexitcode: 0
[2026-01-09 04:55:43] 2026-01-09 09:55:02,788 | INFO     | exeerrorcode: 0
[2026-01-09 04:55:43] 2026-01-09 09:55:02,788 | INFO     | exeerrordiag: 
[2026-01-09 04:55:43] 2026-01-09 09:55:02,788 | INFO     | exitcode: 0
[2026-01-09 04:55:43] 2026-01-09 09:55:02,789 | INFO     | exitmsg: OK
[2026-01-09 04:55:43] 2026-01-09 09:55:02,789 | INFO     | cpuconsumptiontime: 55161 s
[2026-01-09 04:55:43] 2026-01-09 09:55:02,789 | INFO     | nevents: 400
[2026-01-09 04:55:43] 2026-01-09 09:55:02,789 | INFO     | neventsw: 0
[2026-01-09 04:55:43] 2026-01-09 09:55:02,789 | INFO     | pid: 110863
[2026-01-09 04:55:43] 2026-01-09 09:55:02,789 | INFO     | pgrp: 110863
[2026-01-09 04:55:43] 2026-01-09 09:55:02,789 | INFO     | corecount: 8
[2026-01-09 04:55:43] 2026-01-09 09:55:02,789 | INFO     | event service: False
[2026-01-09 04:55:43] 2026-01-09 09:55:02,789 | INFO     | sizes: {0: 2283970, 12: 2283970, 21: 2284260, 23: 2284288, 41593: 2327167, 41594: 2327166, 41606: 2336348, 41608: 2336404, 41655: 2336598}
[2026-01-09 04:55:43] 2026-01-09 09:55:02,789 | INFO     | --------------------------------------------------
[2026-01-09 04:55:43] 2026-01-09 09:55:02,789 | INFO     | 
[2026-01-09 04:55:43] 2026-01-09 09:55:02,789 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 04:55:43] 2026-01-09 09:55:02,850 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,851 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,851 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,851 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,851 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,851 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,851 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,851 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,851 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,851 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,851 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,852 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,852 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,852 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,852 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,852 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,852 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,852 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 04:55:43] 2026-01-09 09:55:02,852 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,852 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 04:55:43] 2026-01-09 09:55:02,852 | INFO     | job 6963146878 has completed (purged errors)
[2026-01-09 04:55:43] 2026-01-09 09:55:02,852 | INFO     | overall cleanup function is called
[2026-01-09 04:55:43] 2026-01-09 09:55:03,865 | INFO     | --- collectZombieJob: --- 10, [110863]
[2026-01-09 04:55:43] 2026-01-09 09:55:03,865 | INFO     | zombie collector waiting for pid 110863
[2026-01-09 04:55:43] 2026-01-09 09:55:03,865 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 04:55:43] 2026-01-09 09:55:03,865 | INFO     | collected zombie processes
[2026-01-09 04:55:43] 2026-01-09 09:55:03,865 | INFO     | will attempt to kill all subprocesses of pid=110863
[2026-01-09 04:55:43] 2026-01-09 09:55:04,519 | INFO     | process IDs to be killed: [110863] (in reverse order)
[2026-01-09 04:55:43] 2026-01-09 09:55:05,321 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 04:55:43] 2026-01-09 09:55:05,322 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 04:55:43] 2026-01-09 09:55:05,338 | INFO     | did not find any defunct processes belonging to 110863
[2026-01-09 04:55:43] 2026-01-09 09:55:05,357 | INFO     | did not find any defunct processes belonging to 110863
[2026-01-09 04:55:43] 2026-01-09 09:55:05,358 | INFO     | ready for new job
[2026-01-09 04:55:43] 2026-01-09 09:55:05,358 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 04:55:43] 2026-01-09 09:55:05,366 | INFO     | ***************************************
[2026-01-09 04:55:43] 2026-01-09 09:55:05,367 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 04:55:43] 2026-01-09 09:55:05,367 | INFO     | ***************************************
[2026-01-09 04:55:43] 2026-01-09 09:55:05,367 | INFO     | 
[2026-01-09 04:55:43] 2026-01-09 09:55:05,370 | INFO     | architecture information:
[2026-01-09 04:55:43] 2026-01-09 09:55:05,373 | INFO     | executing command: cat /etc/os-release
[2026-01-09 04:55:43] 2026-01-09 09:55:05,435 | INFO     | cat /etc/os-release:
[2026-01-09 04:55:43] NAME="CentOS Linux"
[2026-01-09 04:55:43] VERSION="7 (Core)"
[2026-01-09 04:55:43] ID="centos"
[2026-01-09 04:55:43] ID_LIKE="rhel fedora"
[2026-01-09 04:55:43] VERSION_ID="7"
[2026-01-09 04:55:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 04:55:43] ANSI_COLOR="0;31"
[2026-01-09 04:55:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 04:55:43] HOME_URL="https://www.centos.org/"
[2026-01-09 04:55:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 04:55:43] 
[2026-01-09 04:55:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 04:55:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 04:55:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 04:55:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 04:55:43] 
[2026-01-09 04:55:43] 2026-01-09 09:55:05,436 | INFO     | ***************************************
[2026-01-09 04:55:43] 2026-01-09 09:55:05,939 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 04:55:43] 2026-01-09 09:55:06,085 | INFO     | sufficient remaining disk space (72760688640 B)
[2026-01-09 04:55:43] 2026-01-09 09:55:06,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 04:55:43] 2026-01-09 09:55:06,085 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 04:55:43] 2026-01-09 09:55:06,085 | INFO     | update_server=False
[2026-01-09 04:55:43] 2026-01-09 09:55:06,085 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 04:55:43] 2026-01-09 09:55:06,086 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 04:55:43] 2026-01-09 09:55:06,086 | INFO     | aborting loop
[2026-01-09 04:55:43] 2026-01-09 09:55:06,086 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 04:55:43] 2026-01-09 09:55:07,009 | INFO     | all data control threads have been joined
[2026-01-09 04:55:43] 2026-01-09 09:55:07,091 | INFO     | [job] retrieve thread has finished
[2026-01-09 04:55:43] 2026-01-09 09:55:07,092 | INFO     | [job] job monitor thread has finished
[2026-01-09 04:55:43] 2026-01-09 09:55:07,139 | INFO     | [payload] validate_post thread has finished
[2026-01-09 04:55:43] 2026-01-09 09:55:07,200 | INFO     | [data] copytool_in thread has finished
[2026-01-09 04:55:43] 2026-01-09 09:55:07,237 | INFO     | all payload control threads have been joined
[2026-01-09 04:55:43] 2026-01-09 09:55:07,802 | INFO     | all job control threads have been joined
[2026-01-09 04:55:43] 2026-01-09 09:55:07,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 04:55:43] 2026-01-09 09:55:08,015 | INFO     | [data] control thread has finished
[2026-01-09 04:55:43] 2026-01-09 09:55:08,093 | INFO     | [data] copytool_out thread has finished
[2026-01-09 04:55:43] 2026-01-09 09:55:08,187 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 04:55:43] 2026-01-09 09:55:08,242 | INFO     | [payload] control thread has finished
[2026-01-09 04:55:43] 2026-01-09 09:55:08,270 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 04:55:43] 2026-01-09 09:55:08,444 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 04:55:43] 2026-01-09 09:55:08,445 | INFO     | [job] validate thread has finished
[2026-01-09 04:55:43] 2026-01-09 09:55:08,445 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 04:55:43] 2026-01-09 09:55:08,504 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 04:55:43] 2026-01-09 09:55:08,508 | INFO     | [payload] failed_post thread has finished
[2026-01-09 04:55:43] 2026-01-09 09:55:08,808 | INFO     | [job] control thread has finished
[2026-01-09 04:55:43] 2026-01-09 09:55:08,815 | INFO     | [job] queue monitor thread has finished
[2026-01-09 04:55:43] 2026-01-09 09:55:12,279 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 04:55:43] 2026-01-09 09:55:34,474 | INFO     | [monitor] cgroup control has ended
[2026-01-09 04:55:43] 2026-01-09 09:55:36,317 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140410059355968)>', '<ExcThread(monitor, started 140409686697728)>']
[2026-01-09 04:55:43] 2026-01-09 09:55:39,021 | INFO     | PID=104098 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 04:55:43] 2026-01-09 09:55:39,021 | INFO     | .. there are 12 such processes running
[2026-01-09 04:55:43] 2026-01-09 09:55:39,021 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 04:55:43] 2026-01-09 09:55:39,021 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 04:55:43] 2026-01-09 09:55:39,021 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 04:55:43] 2026-01-09 09:55:39,021 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 04:55:43] 2026-01-09 09:55:39,021 | INFO     | [monitor] control thread has ended
[2026-01-09 04:55:43] 2026-01-09 09:55:41,343 | INFO     | all workflow threads have been joined
[2026-01-09 04:55:43] 2026-01-09 09:55:41,344 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 04:55:43] 2026-01-09 09:55:41,344 | INFO     | traces error code: 0
[2026-01-09 04:55:43] 2026-01-09 09:55:41,345 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 04:55:43] 2026-01-09 09:55:41,506 [wrapper] ==== pilot stdout END ====
[2026-01-09 04:55:43] 2026-01-09 09:55:41,529 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 04:55:43] 2026-01-09 09:55:41,569 [wrapper] pilotpid: 104098
[2026-01-09 04:55:43] 2026-01-09 09:55:41,665 [wrapper] Pilot exit status: 0
[2026-01-09 04:55:43] 2026-01-09 09:55:41,881 [wrapper] pandaids: 6963146878
[2026-01-09 04:55:43] 2026-01-09 09:55:42,540 [wrapper] cleanup supervisor_pilot 1272154 104099
[2026-01-09 04:55:43] 2026-01-09 09:55:42,554 [wrapper] Test setup, not cleaning
[2026-01-09 04:55:43] 2026-01-09 09:55:42,595 [wrapper] apfmon messages muted
[2026-01-09 04:55:43] 2026-01-09 09:55:42,709 [wrapper] ==== wrapper stdout END ====
[2026-01-09 04:55:43] 2026-01-09 09:55:42,752 [wrapper] ==== wrapper stderr END ====
[2026-01-09 04:55:43]  *** Error codes and diagnostics ***
[2026-01-09 04:55:43]     "exeErrorCode": 0,
[2026-01-09 04:55:43]     "exeErrorDiag": "",
[2026-01-09 04:55:43]     "pilotErrorCode": 0,
[2026-01-09 04:55:43]     "pilotErrorDiag": "",
[2026-01-09 04:55:43]  *** Listing of results directory ***
[2026-01-09 04:55:43] total 450468
[2026-01-09 04:55:43] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 10:02 pilot3.tar.gz
[2026-01-09 04:55:43] -rwx------. 1 boincer umatlas     36322 Jan  8 10:03 runpilot2-wrapper.sh
[2026-01-09 04:55:43] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 10:04 queuedata.json
[2026-01-09 04:55:43] -rw-r--r--. 1 boincer umatlas       100 Jan  8 17:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 04:55:43] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 17:19 run_atlas
[2026-01-09 04:55:43] -rw-r--r--. 1 boincer umatlas       105 Jan  8 17:19 job.xml
[2026-01-09 04:55:43] -rw-r--r--. 2 boincer umatlas 224884186 Jan  8 17:19 EVNT.47898824._001072.pool.root.1
[2026-01-09 04:55:43] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 17:19 start_atlas.sh
[2026-01-09 04:55:43] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 17:19 shared
[2026-01-09 04:55:43] -rw-r--r--. 2 boincer umatlas    592400 Jan  8 17:19 input.tar.gz
[2026-01-09 04:55:43] -rw-r--r--. 1 boincer umatlas         0 Jan  8 17:19 boinc_lockfile
[2026-01-09 04:55:43] -rw-r--r--. 1 boincer umatlas      2519 Jan  8 17:19 pandaJob.out
[2026-01-09 04:55:43] -rw-------. 1 boincer umatlas        57 Jan  8 17:19 setup.sh.local
[2026-01-09 04:55:43] -rw-------. 1 boincer umatlas    989837 Jan  8 17:20 agis_schedconf.cvmfs.json
[2026-01-09 04:55:43] drwx------. 5 boincer umatlas      4096 Jan  8 17:20 pilot3
[2026-01-09 04:55:43] -rw-r--r--. 1 boincer umatlas      6843 Jan  9 04:48 init_data.xml
[2026-01-09 04:55:43] -rw-------. 1 boincer umatlas 220804094 Jan  9 04:49 HITS.47898826._027181.pool.root.1
[2026-01-09 04:55:43] -rw-r--r--. 1 boincer umatlas       531 Jan  9 04:49 boinc_task_state.xml
[2026-01-09 04:55:43] -rw-------. 1 boincer umatlas      1039 Jan  9 04:53 memory_monitor_summary.json
[2026-01-09 04:55:43] -rw-------. 1 boincer umatlas   1516240 Jan  9 04:54 agis_ddmendpoints.agis.ALL.json
[2026-01-09 04:55:43] -rw-------. 1 boincer umatlas    782828 Jan  9 04:54 log.47898826._027181.job.log.tgz.1
[2026-01-09 04:55:43] -rw-------. 1 boincer umatlas        95 Jan  9 04:54 pilot_heartbeat.json
[2026-01-09 04:55:43] -rw-------. 1 boincer umatlas      7823 Jan  9 04:55 heartbeat.json
[2026-01-09 04:55:43] -rw-------. 1 boincer umatlas      4823 Jan  9 04:55 pilotlog.txt
[2026-01-09 04:55:43] -rw-------. 1 boincer umatlas   5052085 Jan  9 04:55 log.47898826._027181.job.log.1
[2026-01-09 04:55:43] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 04:55 boinc_mmap_file
[2026-01-09 04:55:43] -rw-r--r--. 1 boincer umatlas        28 Jan  9 04:55 wrapper_checkpoint.txt
[2026-01-09 04:55:43] -rw-------. 1 boincer umatlas       357 Jan  9 04:55 output.list
[2026-01-09 04:55:43] -rw-r--r--. 1 boincer umatlas       620 Jan  9 04:55 runtime_log
[2026-01-09 04:55:43] -rw-------. 1 boincer umatlas   5857280 Jan  9 04:55 result.tar.gz
[2026-01-09 04:55:43] -rw-r--r--. 1 boincer umatlas      9353 Jan  9 04:55 runtime_log.err
[2026-01-09 04:55:43] -rw-------. 1 boincer umatlas       659 Jan  9 04:55 drBNDmRj6x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmjVfKDmAeaUxn.diag
[2026-01-09 04:55:43] -rw-r--r--. 1 boincer umatlas     21360 Jan  9 04:55 stderr.txt
[2026-01-09 04:55:43] HITS file was successfully produced:
[2026-01-09 04:55:43] -rw-------. 1 boincer umatlas 220804094 Jan  9 04:49 shared/HITS.pool.root.1
[2026-01-09 04:55:43]  *** Contents of shared directory: ***
[2026-01-09 04:55:43] total 441568
[2026-01-09 04:55:43] -rw-r--r--. 2 boincer umatlas 224884186 Jan  8 17:19 ATLAS.root_0
[2026-01-09 04:55:43] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 17:19 start_atlas.sh
[2026-01-09 04:55:43] -rw-r--r--. 2 boincer umatlas    592400 Jan  8 17:19 input.tar.gz
[2026-01-09 04:55:43] -rw-------. 1 boincer umatlas 220804094 Jan  9 04:49 HITS.pool.root.1
[2026-01-09 04:55:43] -rw-------. 1 boincer umatlas   5857280 Jan  9 04:55 result.tar.gz
04:56:05 (98561): run_atlas exited; CPU time 56065.951006
04:56:05 (98561): called boinc_finish(0)

</stderr_txt>
]]>

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