Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:55 (3871702): wrapper (7.7.26015): starting
00:01:55 (3871702): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 00:01:55] Arguments: --nthreads 12
[2026-01-09 00:01:55] Threads: 12
[2026-01-09 00:01:55] Checking for CVMFS
[2026-01-09 00:01:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:01:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:01:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:01:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:01:58] 2.13.3.0 12755 92957 381120 154931 1 66 29820534 40960001 14450 16776704 0 126535214 99.595 148201878 11796 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 00:01:58] CVMFS is ok
[2026-01-09 00:01:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:01:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:01:58] Further information can be found at the LHC@home message board.
[2026-01-09 00:01:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:01:58] Checking for apptainer binary...
[2026-01-09 00:01:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:01:58] Running /usr/bin/apptainer --version
[2026-01-09 00:01:59] apptainer version 1.4.5-2.el9
[2026-01-09 00:01:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:02:01] c7-10-13.aglt2.org
[2026-01-09 00:02:01] apptainer works
[2026-01-09 00:02:01] Set ATHENA_PROC_NUMBER=12
[2026-01-09 00:02:01] Set ATHENA_CORE_NUMBER=12
[2026-01-09 00:02:01] Starting ATLAS job with PandaID=6963145600
[2026-01-09 00:02:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:27:14]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:27:14] 2026-01-10 04:26:13,361 | INFO     | sum of deviations: 1720098783308.8481
[2026-01-09 23:27:14] 2026-01-10 04:26:13,361 | INFO     | mean x: 1767977224.6584122
[2026-01-09 23:27:14] 2026-01-10 04:26:13,362 | INFO     | mean y: 2641296.251274581
[2026-01-09 23:27:14] 2026-01-10 04:26:13,362 | INFO     | intersect: -3786589443.066257
[2026-01-09 23:27:14] 2026-01-10 04:26:13,367 | INFO     | chi2: 15.540237440479094
[2026-01-09 23:27:14] 2026-01-10 04:26:13,371 | INFO     | sum of square deviations: 793827139885.9943
[2026-01-09 23:27:14] 2026-01-10 04:26:13,968 | INFO     | sum of deviations: 2218557641342.5894
[2026-01-09 23:27:14] 2026-01-10 04:26:13,969 | INFO     | mean x: 1767977072.1644738
[2026-01-09 23:27:14] 2026-01-10 04:26:13,969 | INFO     | mean y: 2649997.308479532
[2026-01-09 23:27:14] 2026-01-10 04:26:13,969 | INFO     | intersect: -4938424508.826827
[2026-01-09 23:27:14] 2026-01-10 04:26:14,011 | INFO     | chi2: 11.452494834964883
[2026-01-09 23:27:14] 2026-01-10 04:26:14,063 | INFO     | current chi2=11.452494834964883 (change=26.30424806037062 %)
[2026-01-09 23:27:14] 2026-01-10 04:26:14,112 | INFO     | sum of square deviations: 785155067371.4308
[2026-01-09 23:27:14] 2026-01-10 04:26:14,406 | INFO     | monitor loop #4407: job 0:6963145600 is in state 'finished'
[2026-01-09 23:27:14] 2026-01-10 04:26:14,406 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:27:14] 2026-01-10 04:26:15,173 | INFO     | sum of deviations: 2404020661516.454
[2026-01-09 23:27:14] 2026-01-10 04:26:15,174 | INFO     | mean x: 1767976919.6698458
[2026-01-09 23:27:14] 2026-01-10 04:26:15,174 | INFO     | mean y: 2653250.9721203228
[2026-01-09 23:27:14] 2026-01-10 04:26:15,174 | INFO     | intersect: -5410612510.910649
[2026-01-09 23:27:14] 2026-01-10 04:26:15,179 | INFO     | chi2: 9.920885218891287
[2026-01-09 23:27:14] 2026-01-10 04:26:15,179 | INFO     | current chi2=9.920885218891287 (change=13.3735892322565 %)
[2026-01-09 23:27:14] 2026-01-10 04:26:15,179 | INFO     | right removable region: 1362
[2026-01-09 23:27:14] 2026-01-10 04:26:15,184 | INFO     | sum of square deviations: 793825834549.3209
[2026-01-09 23:27:14] 2026-01-10 04:26:15,511 | INFO     | PID=3878838 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 23:27:14] 2026-01-10 04:26:15,512 | INFO     | .. there are 11 such processes running
[2026-01-09 23:27:14] 2026-01-10 04:26:15,642 | INFO     | sum of deviations: 1211294178003.033
[2026-01-09 23:27:14] 2026-01-10 04:26:15,643 | INFO     | mean x: 1767977377.1637428
[2026-01-09 23:27:14] 2026-01-10 04:26:15,643 | INFO     | mean y: 2650176.38377193
[2026-01-09 23:27:14] 2026-01-10 04:26:15,643 | INFO     | intersect: -2695096118.3249807
[2026-01-09 23:27:14] 2026-01-10 04:26:15,648 | INFO     | chi2: 11.196973031956446
[2026-01-09 23:27:14] 2026-01-10 04:26:15,648 | INFO     | current chi2=11.196973031956446 (change=27.948507383866257 %)
[2026-01-09 23:27:14] 2026-01-10 04:26:15,652 | INFO     | sum of square deviations: 785152540265.77
[2026-01-09 23:27:14] 2026-01-10 04:26:15,810 | INFO     | sum of deviations: 794422143984.8401
[2026-01-09 23:27:14] 2026-01-10 04:26:15,811 | INFO     | mean x: 1767977529.6691122
[2026-01-09 23:27:14] 2026-01-10 04:26:15,811 | INFO     | mean y: 2657505.347762289
[2026-01-09 23:27:14] 2026-01-10 04:26:15,811 | INFO     | intersect: -1786192976.064849
[2026-01-09 23:27:14] 2026-01-10 04:26:15,815 | INFO     | chi2: 8.35299246617033
[2026-01-09 23:27:14] 2026-01-10 04:26:15,816 | INFO     | current chi2=8.35299246617033 (change=25.399548232092044 %)
[2026-01-09 23:27:14] 2026-01-10 04:26:15,820 | INFO     | sum of square deviations: 776542974733.022
[2026-01-09 23:27:14] 2026-01-10 04:26:16,388 | INFO     | sum of deviations: 521722683394.4655
[2026-01-09 23:27:14] 2026-01-10 04:26:16,388 | INFO     | mean x: 1767977682.1715758
[2026-01-09 23:27:14] 2026-01-10 04:26:16,388 | INFO     | mean y: 2662333.680412371
[2026-01-09 23:27:14] 2026-01-10 04:26:16,389 | INFO     | intersect: -1185158676.278765
[2026-01-09 23:27:14] 2026-01-10 04:26:16,393 | INFO     | chi2: 7.126684450094414
[2026-01-09 23:27:14] 2026-01-10 04:26:16,394 | INFO     | current chi2=7.126684450094414 (change=14.681062158770885 %)
[2026-01-09 23:27:14] 2026-01-10 04:26:16,394 | INFO     | left removable region: 30
[2026-01-09 23:27:14] 2026-01-10 04:26:16,398 | INFO     | sum of square deviations: 732789635728.1165
[2026-01-09 23:27:14] 2026-01-10 04:26:16,519 | INFO     | time since job start (84099s) is within the limit (349056.0s)
[2026-01-09 23:27:14] 2026-01-10 04:26:16,551 | INFO     | sum of deviations: 753115714346.7979
[2026-01-09 23:27:14] 2026-01-10 04:26:16,551 | INFO     | mean x: 1767977804.1794295
[2026-01-09 23:27:14] 2026-01-10 04:26:16,551 | INFO     | mean y: 2682819.364864865
[2026-01-09 23:27:14] 2026-01-10 04:26:16,552 | INFO     | intersect: -1814335055.9232779
[2026-01-09 23:27:14] 2026-01-10 04:26:16,556 | INFO     | chi2: 0.33208541104546435
[2026-01-09 23:27:14] 2026-01-10 04:26:16,557 | INFO     | current memory leak: 1.03 B/s (using 1332 data points, chi2=0.33)
[2026-01-09 23:27:14] 2026-01-10 04:26:16,560 | INFO     | could have reported an average CPU frequency of 3291 MHz (49 samples)
[2026-01-09 23:27:14] 2026-01-10 04:26:16,560 | INFO     | ..............................
[2026-01-09 23:27:14] 2026-01-10 04:26:16,561 | INFO     | . Timing measurements:
[2026-01-09 23:27:14] 2026-01-10 04:26:16,561 | INFO     | . get job = 1 s
[2026-01-09 23:27:14] 2026-01-10 04:26:16,561 | INFO     | . initial setup = 23 s
[2026-01-09 23:27:14] 2026-01-10 04:26:16,561 | INFO     | . payload setup = 91 s
[2026-01-09 23:27:14] 2026-01-10 04:26:16,561 | INFO     | . stage-in = 0 s
[2026-01-09 23:27:14] 2026-01-10 04:26:16,561 | INFO     | . payload execution = 83778 s
[2026-01-09 23:27:14] 2026-01-10 04:26:16,562 | INFO     | . stage-out = 7 s
[2026-01-09 23:27:14] 2026-01-10 04:26:16,562 | INFO     | . log creation = 1 s
[2026-01-09 23:27:14] 2026-01-10 04:26:16,562 | INFO     | ..............................
[2026-01-09 23:27:14] 2026-01-10 04:26:16,787 | INFO     | 
[2026-01-09 23:27:14] 2026-01-10 04:26:16,787 | INFO     | job summary report
[2026-01-09 23:27:14] 2026-01-10 04:26:16,787 | INFO     | --------------------------------------------------
[2026-01-09 23:27:14] 2026-01-10 04:26:16,788 | INFO     | PanDA job id: 6963145600
[2026-01-09 23:27:14] 2026-01-10 04:26:16,788 | INFO     | task id: 47898826
[2026-01-09 23:27:14] 2026-01-10 04:26:16,788 | INFO     | errors: (none)
[2026-01-09 23:27:14] 2026-01-10 04:26:16,788 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 23:27:14] 2026-01-10 04:26:16,788 | INFO     | pilot state: finished 
[2026-01-09 23:27:14] 2026-01-10 04:26:16,788 | INFO     | transexitcode: 0
[2026-01-09 23:27:14] 2026-01-10 04:26:16,789 | INFO     | exeerrorcode: 0
[2026-01-09 23:27:14] 2026-01-10 04:26:16,789 | INFO     | exeerrordiag: 
[2026-01-09 23:27:14] 2026-01-10 04:26:16,789 | INFO     | exitcode: 0
[2026-01-09 23:27:14] 2026-01-10 04:26:16,789 | INFO     | exitmsg: OK
[2026-01-09 23:27:14] 2026-01-10 04:26:16,789 | INFO     | cpuconsumptiontime: 144706 s
[2026-01-09 23:27:14] 2026-01-10 04:26:16,789 | INFO     | nevents: 400
[2026-01-09 23:27:14] 2026-01-10 04:26:16,789 | INFO     | neventsw: 0
[2026-01-09 23:27:14] 2026-01-10 04:26:16,790 | INFO     | pid: 3899192
[2026-01-09 23:27:14] 2026-01-10 04:26:16,790 | INFO     | pgrp: 3899192
[2026-01-09 23:27:14] 2026-01-10 04:26:16,790 | INFO     | corecount: 12
[2026-01-09 23:27:14] 2026-01-10 04:26:16,790 | INFO     | event service: False
[2026-01-09 23:27:14] 2026-01-10 04:26:16,790 | INFO     | sizes: {0: 2283141, 1: 2283742, 3: 2283826, 5: 2283854, 6: 2283910, 8: 2283910, 10: 2284237, 12: 2284265, 26: 2284293, 37: 2284321, 49: 2284349, 60: 2284657, 71: 2
[2026-01-09 23:27:14] 2026-01-10 04:26:16,795 | INFO     | --------------------------------------------------
[2026-01-09 23:27:14] 2026-01-10 04:26:16,796 | INFO     | 
[2026-01-09 23:27:14] 2026-01-10 04:26:16,796 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-09 23:27:14] 2026-01-10 04:26:16,844 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,844 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,845 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,845 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,845 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,845 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,845 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,845 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,846 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,846 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,846 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,846 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,846 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,846 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,847 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,875 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,876 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,876 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 23:27:14] 2026-01-10 04:26:16,876 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,876 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 23:27:14] 2026-01-10 04:26:16,877 | INFO     | job 6963145600 has completed (purged errors)
[2026-01-09 23:27:14] 2026-01-10 04:26:16,877 | INFO     | overall cleanup function is called
[2026-01-09 23:27:14] 2026-01-10 04:26:17,954 | INFO     | --- collectZombieJob: --- 10, [3899192]
[2026-01-09 23:27:14] 2026-01-10 04:26:17,955 | INFO     | zombie collector waiting for pid 3899192
[2026-01-09 23:27:14] 2026-01-10 04:26:17,955 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 23:27:14] 2026-01-10 04:26:17,955 | INFO     | collected zombie processes
[2026-01-09 23:27:14] 2026-01-10 04:26:17,955 | INFO     | will attempt to kill all subprocesses of pid=3899192
[2026-01-09 23:27:14] 2026-01-10 04:26:19,108 | INFO     | process IDs to be killed: [3899192] (in reverse order)
[2026-01-09 23:27:14] 2026-01-10 04:26:19,827 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:27:14] 2026-01-10 04:26:19,827 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:27:14] 2026-01-10 04:26:19,862 | INFO     | did not find any defunct processes belonging to 3899192
[2026-01-09 23:27:14] 2026-01-10 04:26:19,887 | INFO     | did not find any defunct processes belonging to 3899192
[2026-01-09 23:27:14] 2026-01-10 04:26:19,888 | INFO     | ready for new job
[2026-01-09 23:27:14] 2026-01-10 04:26:19,888 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:27:14] 2026-01-10 04:26:19,900 | INFO     | ***************************************
[2026-01-09 23:27:14] 2026-01-10 04:26:19,900 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:27:14] 2026-01-10 04:26:19,900 | INFO     | ***************************************
[2026-01-09 23:27:14] 2026-01-10 04:26:19,900 | INFO     | 
[2026-01-09 23:27:14] 2026-01-10 04:26:19,912 | INFO     | architecture information:
[2026-01-09 23:27:14] 2026-01-10 04:26:19,917 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:27:14] 2026-01-10 04:26:20,065 | INFO     | cat /etc/os-release:
[2026-01-09 23:27:14] NAME="CentOS Linux"
[2026-01-09 23:27:14] VERSION="7 (Core)"
[2026-01-09 23:27:14] ID="centos"
[2026-01-09 23:27:14] ID_LIKE="rhel fedora"
[2026-01-09 23:27:14] VERSION_ID="7"
[2026-01-09 23:27:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:27:14] ANSI_COLOR="0;31"
[2026-01-09 23:27:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:27:14] HOME_URL="https://www.centos.org/"
[2026-01-09 23:27:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:27:14] 
[2026-01-09 23:27:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:27:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:27:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:27:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:27:14] 
[2026-01-09 23:27:14] 2026-01-10 04:26:20,066 | INFO     | ***************************************
[2026-01-09 23:27:14] 2026-01-10 04:26:20,569 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-09 23:27:14] 2026-01-10 04:26:20,644 | INFO     | sufficient remaining disk space (85054193664 B)
[2026-01-09 23:27:14] 2026-01-10 04:26:20,644 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:27:14] 2026-01-10 04:26:20,645 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:27:14] 2026-01-10 04:26:20,645 | INFO     | update_server=False
[2026-01-09 23:27:14] 2026-01-10 04:26:20,645 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:27:14] 2026-01-10 04:26:20,645 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:27:14] 2026-01-10 04:26:20,646 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:27:14] 2026-01-10 04:26:20,646 | INFO     | aborting loop
[2026-01-09 23:27:14] 2026-01-10 04:26:21,368 | INFO     | all data control threads have been joined
[2026-01-09 23:27:14] 2026-01-10 04:26:21,426 | INFO     | all job control threads have been joined
[2026-01-09 23:27:14] 2026-01-10 04:26:21,650 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:27:14] 2026-01-10 04:26:21,651 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:27:14] 2026-01-10 04:26:21,669 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:27:14] 2026-01-10 04:26:21,726 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:27:14] 2026-01-10 04:26:21,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:27:14] 2026-01-10 04:26:21,857 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:27:14] 2026-01-10 04:26:22,042 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:27:14] 2026-01-10 04:26:22,066 | INFO     | all payload control threads have been joined
[2026-01-09 23:27:14] 2026-01-10 04:26:22,290 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:27:14] 2026-01-10 04:26:22,374 | INFO     | [data] control thread has finished
[2026-01-09 23:27:14] 2026-01-10 04:26:22,432 | INFO     | [job] control thread has finished
[2026-01-09 23:27:14] 2026-01-10 04:26:22,652 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:27:14] 2026-01-10 04:26:22,693 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:27:14] 2026-01-10 04:26:22,734 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:27:14] 2026-01-10 04:26:22,772 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:27:14] 2026-01-10 04:26:22,776 | INFO     | [job] validate thread has finished
[2026-01-09 23:27:14] 2026-01-10 04:26:22,818 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:27:14] 2026-01-10 04:26:23,072 | INFO     | [payload] control thread has finished
[2026-01-09 23:27:14] 2026-01-10 04:26:26,743 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:27:14] 2026-01-10 04:26:51,795 | INFO     | PID=3878838 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 23:27:14] 2026-01-10 04:26:51,796 | INFO     | .. there are 11 such processes running
[2026-01-09 23:27:14] 2026-01-10 04:26:51,816 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:27:14] 2026-01-10 04:26:51,816 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:27:14] 2026-01-10 04:26:51,816 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:27:14] 2026-01-10 04:27:05,958 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:27:14] 2026-01-10 04:27:06,280 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140491703035712)>', '<ExcThread(monitor, started 140491358185216)>']
[2026-01-09 23:27:14] 2026-01-10 04:27:06,930 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:27:14] 2026-01-10 04:27:06,930 | INFO     | [monitor] control thread has ended
[2026-01-09 23:27:14] 2026-01-10 04:27:11,306 | INFO     | all workflow threads have been joined
[2026-01-09 23:27:14] 2026-01-10 04:27:11,307 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:27:14] 2026-01-10 04:27:11,307 | INFO     | traces error code: 0
[2026-01-09 23:27:14] 2026-01-10 04:27:11,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:27:14] 2026-01-10 04:27:12,076 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:27:14] 2026-01-10 04:27:12,120 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:27:14] 2026-01-10 04:27:12,133 [wrapper] pilotpid: 3878838
[2026-01-09 23:27:14] 2026-01-10 04:27:12,163 [wrapper] Pilot exit status: 0
[2026-01-09 23:27:14] 2026-01-10 04:27:12,303 [wrapper] pandaids: 6963145600
[2026-01-09 23:27:14] 2026-01-10 04:27:12,489 [wrapper] cleanup supervisor_pilot 1558924 3878839
[2026-01-09 23:27:14] 2026-01-10 04:27:12,494 [wrapper] Test setup, not cleaning
[2026-01-09 23:27:14] 2026-01-10 04:27:12,499 [wrapper] apfmon messages muted
[2026-01-09 23:27:14] 2026-01-10 04:27:12,503 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:27:14] 2026-01-10 04:27:12,508 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:27:14]  *** Error codes and diagnostics ***
[2026-01-09 23:27:14]     "exeErrorCode": 0,
[2026-01-09 23:27:14]     "exeErrorDiag": "",
[2026-01-09 23:27:14]     "pilotErrorCode": 0,
[2026-01-09 23:27:14]     "pilotErrorDiag": "",
[2026-01-09 23:27:14]  *** Listing of results directory ***
[2026-01-09 23:27:14] total 462020
[2026-01-09 23:27:14] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 10:02 queuedata.json
[2026-01-09 23:27:14] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 10:02 pilot3.tar.gz
[2026-01-09 23:27:14] -rwx------. 1 boincer umatlas     36322 Jan  8 10:02 runpilot2-wrapper.sh
[2026-01-09 23:27:14] -rw-r--r--. 1 boincer umatlas       100 Jan  9 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:27:14] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 00:01 run_atlas
[2026-01-09 23:27:14] -rw-r--r--. 1 boincer umatlas       105 Jan  9 00:01 job.xml
[2026-01-09 23:27:14] -rw-r--r--. 2 boincer umatlas 225100515 Jan  9 00:01 EVNT.47898824._001018.pool.root.1
[2026-01-09 23:27:14] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:01 start_atlas.sh
[2026-01-09 23:27:14] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 00:01 shared
[2026-01-09 23:27:14] -rw-r--r--. 2 boincer umatlas    592403 Jan  9 00:01 input.tar.gz
[2026-01-09 23:27:14] -rw-r--r--. 1 boincer umatlas         0 Jan  9 00:01 boinc_lockfile
[2026-01-09 23:27:14] -rw-r--r--. 1 boincer umatlas      2519 Jan  9 00:02 pandaJob.out
[2026-01-09 23:27:14] -rw-------. 1 boincer umatlas        57 Jan  9 00:02 setup.sh.local
[2026-01-09 23:27:14] -rw-------. 1 boincer umatlas    989771 Jan  9 00:04 agis_schedconf.cvmfs.json
[2026-01-09 23:27:14] drwx------. 5 boincer umatlas      4096 Jan  9 00:04 pilot3
[2026-01-09 23:27:14] -rw-------. 1 boincer umatlas 221806620 Jan  9 23:17 HITS.47898826._026283.pool.root.1
[2026-01-09 23:27:14] -rw-r--r--. 1 boincer umatlas       532 Jan  9 23:17 boinc_task_state.xml
[2026-01-09 23:27:14] -rw-r--r--. 1 boincer umatlas      6902 Jan  9 23:19 init_data.xml
[2026-01-09 23:27:14] -rw-------. 1 boincer umatlas      1030 Jan  9 23:24 memory_monitor_summary.json
[2026-01-09 23:27:14] -rw-------. 1 boincer umatlas   1516240 Jan  9 23:25 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:27:14] -rw-------. 1 boincer umatlas   1377980 Jan  9 23:25 log.47898826._026283.job.log.tgz.1
[2026-01-09 23:27:14] -rw-------. 1 boincer umatlas      7789 Jan  9 23:26 heartbeat.json
[2026-01-09 23:27:14] -rw-r--r--. 1 boincer umatlas        29 Jan  9 23:26 wrapper_checkpoint.txt
[2026-01-09 23:27:14] -rw-------. 1 boincer umatlas        95 Jan  9 23:26 pilot_heartbeat.json
[2026-01-09 23:27:14] -rw-------. 1 boincer umatlas      4824 Jan  9 23:27 pilotlog.txt
[2026-01-09 23:27:14] -rw-------. 1 boincer umatlas   9764206 Jan  9 23:27 log.47898826._026283.job.log.1
[2026-01-09 23:27:14] -rw-------. 1 boincer umatlas       357 Jan  9 23:27 output.list
[2026-01-09 23:27:14] -rw-r--r--. 1 boincer umatlas       620 Jan  9 23:27 runtime_log
[2026-01-09 23:27:14] -rw-------. 1 boincer umatlas  11161600 Jan  9 23:27 result.tar.gz
[2026-01-09 23:27:14] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 23:27 boinc_mmap_file
[2026-01-09 23:27:14] -rw-r--r--. 1 boincer umatlas      9345 Jan  9 23:27 runtime_log.err
[2026-01-09 23:27:14] -rw-------. 1 boincer umatlas       660 Jan  9 23:27 AAVMDm5h6x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJdkKDmJnrOVm.diag
[2026-01-09 23:27:14] -rw-r--r--. 1 boincer umatlas     21256 Jan  9 23:27 stderr.txt
[2026-01-09 23:27:14] HITS file was successfully produced:
[2026-01-09 23:27:14] -rw-------. 1 boincer umatlas 221806620 Jan  9 23:17 shared/HITS.pool.root.1
[2026-01-09 23:27:14]  *** Contents of shared directory: ***
[2026-01-09 23:27:14] total 447940
[2026-01-09 23:27:14] -rw-r--r--. 2 boincer umatlas 225100515 Jan  9 00:01 ATLAS.root_0
[2026-01-09 23:27:14] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:01 start_atlas.sh
[2026-01-09 23:27:14] -rw-r--r--. 2 boincer umatlas    592403 Jan  9 00:01 input.tar.gz
[2026-01-09 23:27:14] -rw-------. 1 boincer umatlas 221806620 Jan  9 23:17 HITS.pool.root.1
[2026-01-09 23:27:14] -rw-------. 1 boincer umatlas  11161600 Jan  9 23:27 result.tar.gz
23:27:16 (3871702): run_atlas exited; CPU time 148086.421102
23:27:16 (3871702): called boinc_finish(0)

</stderr_txt>
]]>

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