Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:25:16 (771): wrapper (7.7.26015): starting
13:25:16 (771): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 13:25:16] Arguments: --nthreads 12
[2026-01-08 13:25:16] Threads: 12
[2026-01-08 13:25:16] Checking for CVMFS
[2026-01-08 13:25:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 13:25:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 13:25:17] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 13:25:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 13:25:17] 2.11.2.0 6893 179872 96632 154916 0 57 11351916 20275200 1 130560 0 69005976 99.912 9989755 34956 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 13:25:17] CVMFS is ok
[2026-01-08 13:25:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 13:25:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 13:25:17] Further information can be found at the LHC@home message board.
[2026-01-08 13:25:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 13:25:17] Checking for apptainer binary...
[2026-01-08 13:25:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 13:25:17] Running /usr/bin/apptainer --version
[2026-01-08 13:25:17] apptainer version 1.3.2-1.el7
[2026-01-08 13:25:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 13:25:18] c-205-3.aglt2.org
[2026-01-08 13:25:18] apptainer works
[2026-01-08 13:25:18] Set ATHENA_PROC_NUMBER=12
[2026-01-08 13:25:18] Set ATHENA_CORE_NUMBER=12
[2026-01-08 13:25:18] Starting ATLAS job with PandaID=6963077507
[2026-01-08 13:25:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 15:05:49]  *** The last 200 lines of the pilot log: ***
[2026-01-08 15:05:49]  is_tar=False
[2026-01-08 15:05:49]  lfn=log.47898826._024162.job.log.tgz.1
[2026-01-08 15:05:49]  mtime=0
[2026-01-08 15:05:49]  protocol_id=None
[2026-01-08 15:05:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-08 15:05:49]  replicas=None
[2026-01-08 15:05:49]  scope=mc23_13p6TeV
[2026-01-08 15:05:49]  status=None
[2026-01-08 15:05:49]  status_code=0
[2026-01-08 15:05:49]  storage_token=
[2026-01-08 15:05:49]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6963077507/log.47898826._024162.job.log.tgz.1
[2026-01-08 15:05:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b8/b5/log.47898826._024162.job.log.tgz.1
[2026-01-08 15:05:49]  workdir=None
[2026-01-08 15:05:49] ]
[2026-01-08 15:05:49] 2026-01-08 20:04:40,563 | INFO     | transferring file log.47898826._024162.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963077507/log.47898826._024162.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-08 15:05:49] 2026-01-08 20:04:40,563 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963077507/log.47898826._024162.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._024162.job
[2026-01-08 15:05:49] 2026-01-08 20:04:40,586 | INFO     | adding to output.list: log.47898826._024162.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b8/b5/log.47898826._024162.job.log.tg
[2026-01-08 15:05:49] 2026-01-08 20:04:40,587 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-08 15:05:49] 2026-01-08 20:04:40,587 | INFO     | summary of transferred files:
[2026-01-08 15:05:49] 2026-01-08 20:04:40,587 | INFO     |  -- lfn=log.47898826._024162.job.log.tgz.1, status_code=0, status=transferred
[2026-01-08 15:05:49] 2026-01-08 20:04:40,588 | INFO     | stage-out finished correctly
[2026-01-08 15:05:49] 2026-01-08 20:04:40,674 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-08 15:05:49] 2026-01-08 20:04:40,756 | INFO     | job 6963077507 has state=finished
[2026-01-08 15:05:49] 2026-01-08 20:04:40,756 | INFO     | preparing for final server update for job 6963077507 in state='finished'
[2026-01-08 15:05:49] 2026-01-08 20:04:40,818 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-08 15:05:49] 2026-01-08 20:04:40,818 | INFO     | this job has now completed (state=finished)
[2026-01-08 15:05:49] 2026-01-08 20:04:40,818 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-08 15:05:49] 2026-01-08 20:04:40,819 | INFO     | log transfer has been attempted: DONE
[2026-01-08 15:05:49] 2026-01-08 20:04:40,819 | INFO     | job 6963077507 has finished - writing final server update
[2026-01-08 15:05:49] 2026-01-08 20:04:40,819 | INFO     | total number of processed events: 400 (read)
[2026-01-08 15:05:49] 2026-01-08 20:04:40,820 | INFO     | executing command: lscpu
[2026-01-08 15:05:49] 2026-01-08 20:04:40,847 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-08 15:05:49] 2026-01-08 20:04:41,926 | INFO     | monitor loop #441: job 0:6963077507 is in state 'finished'
[2026-01-08 15:05:49] 2026-01-08 20:04:41,926 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 15:05:49] 2026-01-08 20:04:42,366 | INFO     | time since job start (5949s) is within the limit (174528.0s)
[2026-01-08 15:05:49] 2026-01-08 20:04:44,371 | INFO     | time since job start (5951s) is within the limit (174528.0s)
[2026-01-08 15:05:49] 2026-01-08 20:04:44,429 | INFO     | monitor loop #442: job 0:6963077507 is in state 'finished'
[2026-01-08 15:05:49] 2026-01-08 20:04:44,429 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 15:05:49] 2026-01-08 20:04:46,376 | INFO     | time since job start (5953s) is within the limit (174528.0s)
[2026-01-08 15:05:49] 2026-01-08 20:04:46,765 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-08 15:05:49] 2026-01-08 20:04:46,770 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2026-01-08 15:05:49] 2026-01-08 20:04:46,773 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963077507/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 15:05:49] 2026-01-08 20:04:46,774 | INFO     | extracted standard info from prmon json
[2026-01-08 15:05:49] 2026-01-08 20:04:46,774 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 15:05:49] 2026-01-08 20:04:46,774 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 15:05:49] 2026-01-08 20:04:46,774 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 15:05:49] 2026-01-08 20:04:46,774 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 15:05:49] 2026-01-08 20:04:46,776 | INFO     | fitting pss+swap vs Time
[2026-01-08 15:05:49] 2026-01-08 20:04:46,777 | INFO     | sum of square deviations: 226022842.5
[2026-01-08 15:05:49] 2026-01-08 20:04:46,777 | INFO     | sum of deviations: -14983749853.499998
[2026-01-08 15:05:49] 2026-01-08 20:04:46,777 | INFO     | mean x: 1767899781.5
[2026-01-08 15:05:49] 2026-01-08 20:04:46,777 | INFO     | mean y: 2787252.3444444444
[2026-01-08 15:05:49] 2026-01-08 20:04:46,777 | INFO     | intersect: 117202304783.64575
[2026-01-08 15:05:49] 2026-01-08 20:04:46,778 | INFO     | chi2: 0.07159109357964856
[2026-01-08 15:05:49] 2026-01-08 20:04:46,778 | INFO     | current memory leak: -66.29 B/s (using 90 data points, chi2=0.07)
[2026-01-08 15:05:49] 2026-01-08 20:04:46,778 | INFO     | could have reported an average CPU frequency of 2128 MHz (7 samples)
[2026-01-08 15:05:49] 2026-01-08 20:04:46,778 | INFO     | ..............................
[2026-01-08 15:05:49] 2026-01-08 20:04:46,778 | INFO     | . Timing measurements:
[2026-01-08 15:05:49] 2026-01-08 20:04:46,779 | INFO     | . get job = 0 s
[2026-01-08 15:05:49] 2026-01-08 20:04:46,779 | INFO     | . initial setup = 2 s
[2026-01-08 15:05:49] 2026-01-08 20:04:46,779 | INFO     | . payload setup = 7 s
[2026-01-08 15:05:49] 2026-01-08 20:04:46,779 | INFO     | . stage-in = 0 s
[2026-01-08 15:05:49] 2026-01-08 20:04:46,779 | INFO     | . payload execution = 5919 s
[2026-01-08 15:05:49] 2026-01-08 20:04:46,779 | INFO     | . stage-out = 0 s
[2026-01-08 15:05:49] 2026-01-08 20:04:46,779 | INFO     | . log creation = 0 s
[2026-01-08 15:05:49] 2026-01-08 20:04:46,779 | INFO     | ..............................
[2026-01-08 15:05:49] 2026-01-08 20:04:46,862 | INFO     | 
[2026-01-08 15:05:49] 2026-01-08 20:04:46,862 | INFO     | job summary report
[2026-01-08 15:05:49] 2026-01-08 20:04:46,862 | INFO     | --------------------------------------------------
[2026-01-08 15:05:49] 2026-01-08 20:04:46,862 | INFO     | PanDA job id: 6963077507
[2026-01-08 15:05:49] 2026-01-08 20:04:46,862 | INFO     | task id: 47898826
[2026-01-08 15:05:49] 2026-01-08 20:04:46,863 | INFO     | errors: (none)
[2026-01-08 15:05:49] 2026-01-08 20:04:46,863 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 15:05:49] 2026-01-08 20:04:46,863 | INFO     | pilot state: finished 
[2026-01-08 15:05:49] 2026-01-08 20:04:46,863 | INFO     | transexitcode: 0
[2026-01-08 15:05:49] 2026-01-08 20:04:46,863 | INFO     | exeerrorcode: 0
[2026-01-08 15:05:49] 2026-01-08 20:04:46,863 | INFO     | exeerrordiag: 
[2026-01-08 15:05:49] 2026-01-08 20:04:46,864 | INFO     | exitcode: 0
[2026-01-08 15:05:49] 2026-01-08 20:04:46,864 | INFO     | exitmsg: OK
[2026-01-08 15:05:49] 2026-01-08 20:04:46,864 | INFO     | cpuconsumptiontime: 65838 s
[2026-01-08 15:05:49] 2026-01-08 20:04:46,864 | INFO     | nevents: 400
[2026-01-08 15:05:49] 2026-01-08 20:04:46,864 | INFO     | neventsw: 0
[2026-01-08 15:05:49] 2026-01-08 20:04:46,864 | INFO     | pid: 11012
[2026-01-08 15:05:49] 2026-01-08 20:04:46,865 | INFO     | pgrp: 11012
[2026-01-08 15:05:49] 2026-01-08 20:04:46,865 | INFO     | corecount: 12
[2026-01-08 15:05:49] 2026-01-08 20:04:46,865 | INFO     | event service: False
[2026-01-08 15:05:49] 2026-01-08 20:04:46,865 | INFO     | sizes: {0: 2283798, 1: 2283997, 5: 2284259, 11: 2284315, 5929: 2311010, 5930: 2311009, 5931: 2320247, 5937: 2320385}
[2026-01-08 15:05:49] 2026-01-08 20:04:46,865 | INFO     | --------------------------------------------------
[2026-01-08 15:05:49] 2026-01-08 20:04:46,865 | INFO     | 
[2026-01-08 15:05:49] 2026-01-08 20:04:46,866 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 15:05:49] 2026-01-08 20:04:46,889 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,890 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,890 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,890 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,890 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,890 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,891 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,891 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,891 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,891 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,891 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,891 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,892 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,892 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,892 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,892 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,892 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,893 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 15:05:49] 2026-01-08 20:04:46,893 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,893 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 15:05:49] 2026-01-08 20:04:46,893 | INFO     | job 6963077507 has completed (purged errors)
[2026-01-08 15:05:49] 2026-01-08 20:04:46,893 | INFO     | overall cleanup function is called
[2026-01-08 15:05:49] 2026-01-08 20:04:47,901 | INFO     | --- collectZombieJob: --- 10, [11012]
[2026-01-08 15:05:49] 2026-01-08 20:04:47,901 | INFO     | zombie collector waiting for pid 11012
[2026-01-08 15:05:49] 2026-01-08 20:04:47,902 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 15:05:49] 2026-01-08 20:04:47,902 | INFO     | collected zombie processes
[2026-01-08 15:05:49] 2026-01-08 20:04:47,902 | INFO     | will attempt to kill all subprocesses of pid=11012
[2026-01-08 15:05:49] 2026-01-08 20:04:47,995 | INFO     | process IDs to be killed: [11012] (in reverse order)
[2026-01-08 15:05:49] 2026-01-08 20:04:48,046 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 15:05:49] 2026-01-08 20:04:48,046 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 15:05:49] 2026-01-08 20:04:48,050 | INFO     | did not find any defunct processes belonging to 11012
[2026-01-08 15:05:49] 2026-01-08 20:04:48,053 | INFO     | did not find any defunct processes belonging to 11012
[2026-01-08 15:05:49] 2026-01-08 20:04:48,053 | INFO     | ready for new job
[2026-01-08 15:05:49] 2026-01-08 20:04:48,053 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 15:05:49] 2026-01-08 20:04:48,055 | INFO     | ***************************************
[2026-01-08 15:05:49] 2026-01-08 20:04:48,055 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 15:05:49] 2026-01-08 20:04:48,055 | INFO     | ***************************************
[2026-01-08 15:05:49] 2026-01-08 20:04:48,055 | INFO     | 
[2026-01-08 15:05:49] 2026-01-08 20:04:48,056 | INFO     | architecture information:
[2026-01-08 15:05:49] 2026-01-08 20:04:48,056 | INFO     | executing command: cat /etc/os-release
[2026-01-08 15:05:49] 2026-01-08 20:04:48,070 | INFO     | cat /etc/os-release:
[2026-01-08 15:05:49] NAME="CentOS Linux"
[2026-01-08 15:05:49] VERSION="7 (Core)"
[2026-01-08 15:05:49] ID="centos"
[2026-01-08 15:05:49] ID_LIKE="rhel fedora"
[2026-01-08 15:05:49] VERSION_ID="7"
[2026-01-08 15:05:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 15:05:49] ANSI_COLOR="0;31"
[2026-01-08 15:05:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 15:05:49] HOME_URL="https://www.centos.org/"
[2026-01-08 15:05:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 15:05:49] 
[2026-01-08 15:05:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 15:05:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 15:05:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 15:05:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 15:05:49] 
[2026-01-08 15:05:49] 2026-01-08 20:04:48,070 | INFO     | ***************************************
[2026-01-08 15:05:49] 2026-01-08 20:04:48,573 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 15:05:49] 2026-01-08 20:04:48,590 | INFO     | sufficient remaining disk space (29437722624 B)
[2026-01-08 15:05:49] 2026-01-08 20:04:48,590 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 15:05:49] 2026-01-08 20:04:48,590 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 15:05:49] 2026-01-08 20:04:48,591 | INFO     | update_server=False
[2026-01-08 15:05:49] 2026-01-08 20:04:48,591 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 15:05:49] 2026-01-08 20:04:48,591 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 15:05:49] 2026-01-08 20:04:48,591 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 15:05:49] 2026-01-08 20:04:48,591 | INFO     | aborting loop
[2026-01-08 15:05:49] 2026-01-08 20:04:48,645 | INFO     | all data control threads have been joined
[2026-01-08 15:05:49] 2026-01-08 20:04:48,684 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 15:05:49] 2026-01-08 20:04:49,014 | INFO     | all payload control threads have been joined
[2026-01-08 15:05:49] 2026-01-08 20:04:49,015 | INFO     | all job control threads have been joined
[2026-01-08 15:05:49] 2026-01-08 20:04:49,596 | INFO     | [job] retrieve thread has finished
[2026-01-08 15:05:49] 2026-01-08 20:04:49,597 | INFO     | [job] queue monitor thread has finished
[2026-01-08 15:05:49] 2026-01-08 20:04:49,598 | INFO     | [job] job monitor thread has finished
[2026-01-08 15:05:49] 2026-01-08 20:04:49,623 | INFO     | [job] validate thread has finished
[2026-01-08 15:05:49] 2026-01-08 20:04:49,650 | INFO     | [data] control thread has finished
[2026-01-08 15:05:49] 2026-01-08 20:04:49,778 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 15:05:49] 2026-01-08 20:04:49,861 | INFO     | [payload] failed_post thread has finished
[2026-01-08 15:05:49] 2026-01-08 20:04:50,019 | INFO     | [payload] control thread has finished
[2026-01-08 15:05:49] 2026-01-08 20:04:50,020 | INFO     | [job] control thread has finished
[2026-01-08 15:05:49] 2026-01-08 20:04:50,393 | INFO     | [data] copytool_in thread has finished
[2026-01-08 15:05:49] 2026-01-08 20:04:50,427 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 15:05:49] 2026-01-08 20:04:50,428 | INFO     | [payload] validate_post thread has finished
[2026-01-08 15:05:49] 2026-01-08 20:04:50,431 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 15:05:49] 2026-01-08 20:04:50,689 | INFO     | [data] copytool_out thread has finished
[2026-01-08 15:05:49] 2026-01-08 20:04:50,888 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 15:05:49] 2026-01-08 20:04:51,264 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 15:05:49] 2026-01-08 20:04:55,270 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 15:05:49] 2026-01-08 20:05:19,580 | INFO     | PID=4612 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 15:05:49] 2026-01-08 20:05:19,581 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 15:05:49] 2026-01-08 20:05:19,581 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 15:05:49] 2026-01-08 20:05:19,581 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 15:05:49] 2026-01-08 20:05:43,114 | INFO     | [monitor] cgroup control has ended
[2026-01-08 15:05:49] 2026-01-08 20:05:43,807 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140312608962368)>', '<ExcThread(monitor, started 140311749719808)>']
[2026-01-08 15:05:49] 2026-01-08 20:05:44,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 15:05:49] 2026-01-08 20:05:44,706 | INFO     | [monitor] control thread has ended
[2026-01-08 15:05:49] 2026-01-08 20:05:48,832 | INFO     | all workflow threads have been joined
[2026-01-08 15:05:49] 2026-01-08 20:05:48,832 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 15:05:49] 2026-01-08 20:05:48,833 | INFO     | traces error code: 0
[2026-01-08 15:05:49] 2026-01-08 20:05:48,833 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 15:05:49] 2026-01-08 20:05:48,924 [wrapper] ==== pilot stdout END ====
[2026-01-08 15:05:49] 2026-01-08 20:05:48,928 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 15:05:49] 2026-01-08 20:05:48,932 [wrapper] pilotpid: 4612
[2026-01-08 15:05:49] 2026-01-08 20:05:48,935 [wrapper] Pilot exit status: 0
[2026-01-08 15:05:49] 2026-01-08 20:05:48,949 [wrapper] pandaids: 6963077507
[2026-01-08 15:05:49] 2026-01-08 20:05:48,993 [wrapper] cleanup supervisor_pilot 10761 4613
[2026-01-08 15:05:49] 2026-01-08 20:05:48,997 [wrapper] Test setup, not cleaning
[2026-01-08 15:05:49] 2026-01-08 20:05:49,001 [wrapper] apfmon messages muted
[2026-01-08 15:05:49] 2026-01-08 20:05:49,005 [wrapper] ==== wrapper stdout END ====
[2026-01-08 15:05:49] 2026-01-08 20:05:49,009 [wrapper] ==== wrapper stderr END ====
[2026-01-08 15:05:49]  *** Error codes and diagnostics ***
[2026-01-08 15:05:49]     "exeErrorCode": 0,
[2026-01-08 15:05:49]     "exeErrorDiag": "",
[2026-01-08 15:05:49]     "pilotErrorCode": 0,
[2026-01-08 15:05:49]     "pilotErrorDiag": "",
[2026-01-08 15:05:49]  *** Listing of results directory ***
[2026-01-08 15:05:49] total 438472
[2026-01-08 15:05:49] -rwx------ 1 boincer umatlas     36322 Jan  8 06:07 runpilot2-wrapper.sh
[2026-01-08 15:05:49] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 06:09 queuedata.json
[2026-01-08 15:05:49] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 06:09 pilot3.tar.gz
[2026-01-08 15:05:49] -rw-r--r-- 1 boincer umatlas       100 Jan  8 13:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 15:05:49] -rwxr-xr-x 1 boincer umatlas      7986 Jan  8 13:25 run_atlas
[2026-01-08 15:05:49] -rw-r--r-- 1 boincer umatlas       105 Jan  8 13:25 job.xml
[2026-01-08 15:05:49] -rw-r--r-- 2 boincer umatlas 226678880 Jan  8 13:25 EVNT.47898824._000962.pool.root.1
[2026-01-08 15:05:49] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 13:25 start_atlas.sh
[2026-01-08 15:05:49] drwxrwx--x 2 boincer umatlas      4096 Jan  8 13:25 shared
[2026-01-08 15:05:49] -rw-r--r-- 2 boincer umatlas    592396 Jan  8 13:25 input.tar.gz
[2026-01-08 15:05:49] -rw-r--r-- 1 boincer umatlas         0 Jan  8 13:25 boinc_lockfile
[2026-01-08 15:05:49] -rw-r--r-- 1 boincer umatlas      2519 Jan  8 13:25 pandaJob.out
[2026-01-08 15:05:49] -rw------- 1 boincer umatlas        57 Jan  8 13:25 setup.sh.local
[2026-01-08 15:05:49] -rw------- 1 boincer umatlas    989829 Jan  8 13:25 agis_schedconf.cvmfs.json
[2026-01-08 15:05:49] -rw------- 1 boincer umatlas   1516240 Jan  8 13:25 agis_ddmendpoints.agis.ALL.json
[2026-01-08 15:05:49] drwx------ 5 boincer umatlas      4096 Jan  8 13:25 pilot3
[2026-01-08 15:05:49] -rw-r--r-- 1 boincer umatlas      5952 Jan  8 15:03 init_data.xml
[2026-01-08 15:05:49] -rw------- 1 boincer umatlas 215900406 Jan  8 15:04 HITS.47898826._024162.pool.root.1
[2026-01-08 15:05:49] -rw-r--r-- 1 boincer umatlas       530 Jan  8 15:04 boinc_task_state.xml
[2026-01-08 15:05:49] -rw------- 1 boincer umatlas      1045 Jan  8 15:04 memory_monitor_summary.json
[2026-01-08 15:05:49] -rw------- 1 boincer umatlas    403713 Jan  8 15:04 log.47898826._024162.job.log.tgz.1
[2026-01-08 15:05:49] -rw------- 1 boincer umatlas      7851 Jan  8 15:04 heartbeat.json
[2026-01-08 15:05:49] -rw------- 1 boincer umatlas        95 Jan  8 15:05 pilot_heartbeat.json
[2026-01-08 15:05:49] -rw-r--r-- 1 boincer umatlas        27 Jan  8 15:05 wrapper_checkpoint.txt
[2026-01-08 15:05:49] -rw-r--r-- 1 boincer umatlas      8192 Jan  8 15:05 boinc_mmap_file
[2026-01-08 15:05:49] -rw------- 1 boincer umatlas      4745 Jan  8 15:05 pilotlog.txt
[2026-01-08 15:05:49] -rw------- 1 boincer umatlas    845794 Jan  8 15:05 log.47898826._024162.job.log.1
[2026-01-08 15:05:49] -rw------- 1 boincer umatlas       357 Jan  8 15:05 output.list
[2026-01-08 15:05:49] -rw-r--r-- 1 boincer umatlas       620 Jan  8 15:05 runtime_log
[2026-01-08 15:05:49] -rw------- 1 boincer umatlas   1269760 Jan  8 15:05 result.tar.gz
[2026-01-08 15:05:49] -rw-r--r-- 1 boincer umatlas      9339 Jan  8 15:05 runtime_log.err
[2026-01-08 15:05:49] -rw------- 1 boincer umatlas       658 Jan  8 15:05 8d7NDmv22x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpGkKDmhI3fIo.diag
[2026-01-08 15:05:49] -rw-r--r-- 1 boincer umatlas     21602 Jan  8 15:05 stderr.txt
[2026-01-08 15:05:49] HITS file was successfully produced:
[2026-01-08 15:05:49] -rw------- 1 boincer umatlas 215900406 Jan  8 15:04 shared/HITS.pool.root.1
[2026-01-08 15:05:49]  *** Contents of shared directory: ***
[2026-01-08 15:05:49] total 434052
[2026-01-08 15:05:49] -rw-r--r-- 2 boincer umatlas 226678880 Jan  8 13:25 ATLAS.root_0
[2026-01-08 15:05:49] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 13:25 start_atlas.sh
[2026-01-08 15:05:49] -rw-r--r-- 2 boincer umatlas    592396 Jan  8 13:25 input.tar.gz
[2026-01-08 15:05:49] -rw------- 1 boincer umatlas 215900406 Jan  8 15:04 HITS.pool.root.1
[2026-01-08 15:05:49] -rw------- 1 boincer umatlas   1269760 Jan  8 15:05 result.tar.gz
15:05:51 (771): run_atlas exited; CPU time 65825.581558
15:05:51 (771): called boinc_finish(0)

</stderr_txt>
]]>

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