Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:11:18 (8905): wrapper (7.7.26015): starting
13:11:18 (8905): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 13:11:18] Arguments: --nthreads 8
[2026-01-08 13:11:18] Threads: 8
[2026-01-08 13:11:18] Checking for CVMFS
[2026-01-08 13:11:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 13:11:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 13:11:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 13:11:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 13:11:21] 2.13.3.0 290515 95071 571216 154915 3 372 30226068 40960001 13045 16776704 0 300957785 99.611 312105043 39333 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 13:11:21] CVMFS is ok
[2026-01-08 13:11:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 13:11:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 13:11:21] Further information can be found at the LHC@home message board.
[2026-01-08 13:11:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 13:11:21] Checking for apptainer binary...
[2026-01-08 13:11:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 13:11:21] Running /usr/bin/apptainer --version
[2026-01-08 13:11:21] apptainer version 1.4.5-2.el9
[2026-01-08 13:11:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 13:11:22] c6-5-37-4.aglt2.org
[2026-01-08 13:11:22] apptainer works
[2026-01-08 13:11:22] Set ATHENA_PROC_NUMBER=8
[2026-01-08 13:11:22] Set ATHENA_CORE_NUMBER=8
[2026-01-08 13:11:23] Starting ATLAS job with PandaID=6963078418
[2026-01-08 13:11:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:30:22 (751468): wrapper (7.7.26015): starting
19:30:22 (751468): wrapper: running run_atlas (--nthreads 9)
[2026-01-08 19:30:22] Arguments: --nthreads 9
[2026-01-08 19:30:22] Threads: 9
[2026-01-08 19:30:22] This job has been restarted, cleaning up previous attempt
[2026-01-08 19:30:23] Checking for CVMFS
[2026-01-08 19:30:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 19:30:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 19:30:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 19:30:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 19:30:25] 2.13.3.0 290515 95450 563288 154925 0 87 30784404 40960000 8196 16776704 0 301215464 99.611 312118642 39332 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 19:30:25] CVMFS is ok
[2026-01-08 19:30:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 19:30:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 19:30:25] Further information can be found at the LHC@home message board.
[2026-01-08 19:30:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 19:30:25] Checking for apptainer binary...
[2026-01-08 19:30:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 19:30:25] Running /usr/bin/apptainer --version
[2026-01-08 19:30:25] apptainer version 1.4.5-2.el9
[2026-01-08 19:30:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 19:30:25] c6-5-37-4.aglt2.org
[2026-01-08 19:30:25] apptainer works
[2026-01-08 19:30:25] Set ATHENA_PROC_NUMBER=9
[2026-01-08 19:30:25] Set ATHENA_CORE_NUMBER=9
[2026-01-08 19:30:25] Starting ATLAS job with PandaID=6963078418
[2026-01-08 19:30:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 02:47:01]  *** The last 200 lines of the pilot log: ***
[2026-01-09 02:47:01] 2026-01-09 07:46:07,028 | INFO     | time since job start (26116s) is within the limit (174528.0s)
[2026-01-09 02:47:01] 2026-01-09 07:46:08,846 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 02:47:01] 2026-01-09 07:46:08,855 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2938.553589285714
[2026-01-09 02:47:01] 2026-01-09 07:46:08,868 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963078418/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 02:47:01] 2026-01-09 07:46:08,869 | INFO     | extracted standard info from prmon json
[2026-01-09 02:47:01] 2026-01-09 07:46:08,869 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 02:47:01] 2026-01-09 07:46:08,869 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 02:47:01] 2026-01-09 07:46:08,889 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 02:47:01] 2026-01-09 07:46:08,890 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 02:47:01] 2026-01-09 07:46:08,956 | INFO     | fitting pss+swap vs Time
[2026-01-09 02:47:01] 2026-01-09 07:46:08,957 | INFO     | sum of square deviations: 24142882809.01171
[2026-01-09 02:47:01] 2026-01-09 07:46:08,989 | INFO     | sum of deviations: -104059054991.62766
[2026-01-09 02:47:01] 2026-01-09 07:46:08,990 | INFO     | mean x: 1767931686.1873536
[2026-01-09 02:47:01] 2026-01-09 07:46:08,990 | INFO     | mean y: 2562467.957845433
[2026-01-09 02:47:01] 2026-01-09 07:46:08,990 | INFO     | intersect: 7622584567.62779
[2026-01-09 02:47:01] 2026-01-09 07:46:08,990 | INFO     | chi2: 3.7264411671423217
[2026-01-09 02:47:01] 2026-01-09 07:46:08,991 | INFO     | sum of square deviations: 23304769549.952377
[2026-01-09 02:47:01] 2026-01-09 07:46:09,014 | INFO     | sum of deviations: -18712630411.96681
[2026-01-09 02:47:01] 2026-01-09 07:46:09,014 | INFO     | mean x: 1767931533.6919432
[2026-01-09 02:47:01] 2026-01-09 07:46:09,014 | INFO     | mean y: 2577926.2156398105
[2026-01-09 02:47:01] 2026-01-09 07:46:09,014 | INFO     | intersect: 1422143535.4240167
[2026-01-09 02:47:01] 2026-01-09 07:46:09,015 | INFO     | chi2: 1.5004177139331685
[2026-01-09 02:47:01] 2026-01-09 07:46:09,015 | INFO     | current chi2=1.5004177139331685 (change=59.73590762245183 %)
[2026-01-09 02:47:01] 2026-01-09 07:46:09,015 | INFO     | sum of square deviations: 22486206606.03356
[2026-01-09 02:47:01] 2026-01-09 07:46:09,030 | INFO     | sum of deviations: -18389465107.721813
[2026-01-09 02:47:01] 2026-01-09 07:46:09,030 | INFO     | mean x: 1767931381.1894484
[2026-01-09 02:47:01] 2026-01-09 07:46:09,057 | INFO     | mean y: 2577986.426858513
[2026-01-09 02:47:01] 2026-01-09 07:46:09,058 | INFO     | intersect: 1448411559.7298036
[2026-01-09 02:47:01] 2026-01-09 07:46:09,058 | INFO     | chi2: 1.5002542677479136
[2026-01-09 02:47:01] 2026-01-09 07:46:09,058 | INFO     | current chi2=1.5002542677479136 (change=0.010893378806254133 %)
[2026-01-09 02:47:01] 2026-01-09 07:46:09,058 | INFO     | right removable region: 416
[2026-01-09 02:47:01] 2026-01-09 07:46:09,059 | INFO     | sum of square deviations: 23304563614.379295
[2026-01-09 02:47:01] 2026-01-09 07:46:09,062 | INFO     | sum of deviations: -166516303126.768
[2026-01-09 02:47:01] 2026-01-09 07:46:09,063 | INFO     | mean x: 1767931838.7014217
[2026-01-09 02:47:01] 2026-01-09 07:46:09,063 | INFO     | mean y: 2573767.7796208533
[2026-01-09 02:47:01] 2026-01-09 07:46:09,063 | INFO     | intersect: 12634840942.223822
[2026-01-09 02:47:01] 2026-01-09 07:46:09,072 | INFO     | chi2: 2.4125684973206374
[2026-01-09 02:47:01] 2026-01-09 07:46:09,072 | INFO     | current chi2=2.4125684973206374 (change=35.258108497906264 %)
[2026-01-09 02:47:01] 2026-01-09 07:46:09,072 | INFO     | sum of square deviations: 22485898316.004807
[2026-01-09 02:47:01] 2026-01-09 07:46:09,087 | INFO     | sum of deviations: -162518530181.35254
[2026-01-09 02:47:01] 2026-01-09 07:46:09,087 | INFO     | mean x: 1767931991.2134292
[2026-01-09 02:47:01] 2026-01-09 07:46:09,087 | INFO     | mean y: 2573014.81294964
[2026-01-09 02:47:01] 2026-01-09 07:46:09,087 | INFO     | intersect: 12780435150.215883
[2026-01-09 02:47:01] 2026-01-09 07:46:09,088 | INFO     | chi2: 2.400672167054453
[2026-01-09 02:47:01] 2026-01-09 07:46:09,088 | INFO     | current chi2=2.400672167054453 (change=0.4930981350123818 %)
[2026-01-09 02:47:01] 2026-01-09 07:46:09,088 | INFO     | left removable region: 20
[2026-01-09 02:47:01] 2026-01-09 07:46:09,088 | INFO     | sum of square deviations: 19257120166.32337
[2026-01-09 02:47:01] 2026-01-09 07:46:09,120 | INFO     | sum of deviations: -58699752279.78788
[2026-01-09 02:47:01] 2026-01-09 07:46:09,120 | INFO     | mean x: 1767931960.7171717
[2026-01-09 02:47:01] 2026-01-09 07:46:09,120 | INFO     | mean y: 2585418.9393939395
[2026-01-09 02:47:01] 2026-01-09 07:46:09,120 | INFO     | intersect: 5391613853.372802
[2026-01-09 02:47:01] 2026-01-09 07:46:09,121 | INFO     | chi2: 0.1278862659440043
[2026-01-09 02:47:01] 2026-01-09 07:46:09,121 | INFO     | current memory leak: -3.05 B/s (using 396 data points, chi2=0.13)
[2026-01-09 02:47:01] 2026-01-09 07:46:09,122 | INFO     | could have reported an average CPU frequency of 3013 MHz (18 samples)
[2026-01-09 02:47:01] 2026-01-09 07:46:09,122 | INFO     | ..............................
[2026-01-09 02:47:01] 2026-01-09 07:46:09,151 | INFO     | time since job start (26118s) is within the limit (174528.0s)
[2026-01-09 02:47:01] 2026-01-09 07:46:09,122 | INFO     | . Timing measurements:
[2026-01-09 02:47:01] 2026-01-09 07:46:09,152 | INFO     | . get job = 0 s
[2026-01-09 02:47:01] 2026-01-09 07:46:09,152 | INFO     | . initial setup = 2 s
[2026-01-09 02:47:01] 2026-01-09 07:46:09,152 | INFO     | . payload setup = 8 s
[2026-01-09 02:47:01] 2026-01-09 07:46:09,152 | INFO     | . stage-in = 0 s
[2026-01-09 02:47:01] 2026-01-09 07:46:09,152 | INFO     | . payload execution = 26026 s
[2026-01-09 02:47:01] 2026-01-09 07:46:09,152 | INFO     | . stage-out = 17 s
[2026-01-09 02:47:01] 2026-01-09 07:46:09,152 | INFO     | . log creation = 2 s
[2026-01-09 02:47:01] 2026-01-09 07:46:09,152 | INFO     | ..............................
[2026-01-09 02:47:01] 2026-01-09 07:46:10,172 | INFO     | 
[2026-01-09 02:47:01] 2026-01-09 07:46:10,192 | INFO     | job summary report
[2026-01-09 02:47:01] 2026-01-09 07:46:10,192 | INFO     | --------------------------------------------------
[2026-01-09 02:47:01] 2026-01-09 07:46:10,192 | INFO     | PanDA job id: 6963078418
[2026-01-09 02:47:01] 2026-01-09 07:46:10,193 | INFO     | task id: 47898826
[2026-01-09 02:47:01] 2026-01-09 07:46:10,193 | INFO     | errors: (none)
[2026-01-09 02:47:01] 2026-01-09 07:46:10,193 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 02:47:01] 2026-01-09 07:46:10,193 | INFO     | pilot state: finished 
[2026-01-09 02:47:01] 2026-01-09 07:46:10,193 | INFO     | transexitcode: 0
[2026-01-09 02:47:01] 2026-01-09 07:46:10,193 | INFO     | exeerrorcode: 0
[2026-01-09 02:47:01] 2026-01-09 07:46:10,193 | INFO     | exeerrordiag: 
[2026-01-09 02:47:01] 2026-01-09 07:46:10,193 | INFO     | exitcode: 0
[2026-01-09 02:47:01] 2026-01-09 07:46:10,193 | INFO     | exitmsg: OK
[2026-01-09 02:47:01] 2026-01-09 07:46:10,193 | INFO     | cpuconsumptiontime: 55632 s
[2026-01-09 02:47:01] 2026-01-09 07:46:10,193 | INFO     | nevents: 400
[2026-01-09 02:47:01] 2026-01-09 07:46:10,193 | INFO     | neventsw: 0
[2026-01-09 02:47:01] 2026-01-09 07:46:10,193 | INFO     | pid: 772234
[2026-01-09 02:47:01] 2026-01-09 07:46:10,193 | INFO     | pgrp: 772234
[2026-01-09 02:47:01] 2026-01-09 07:46:10,193 | INFO     | corecount: 9
[2026-01-09 02:47:01] 2026-01-09 07:46:10,193 | INFO     | event service: False
[2026-01-09 02:47:01] 2026-01-09 07:46:10,194 | INFO     | sizes: {0: 2283967, 1: 2283967, 8: 2284257, 11: 2284285, 26040: 2320381, 26042: 2320380, 26061: 2329562, 26063: 2329618, 26097: 2329812}
[2026-01-09 02:47:01] 2026-01-09 07:46:10,194 | INFO     | --------------------------------------------------
[2026-01-09 02:47:01] 2026-01-09 07:46:10,194 | INFO     | 
[2026-01-09 02:47:01] 2026-01-09 07:46:10,194 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 02:47:01] 2026-01-09 07:46:10,651 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,651 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,651 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,651 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,651 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,651 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,651 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,651 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,651 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,651 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,652 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,652 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,652 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,652 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,652 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,652 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,652 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,652 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 02:47:01] 2026-01-09 07:46:10,652 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,652 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 02:47:01] 2026-01-09 07:46:10,652 | INFO     | job 6963078418 has completed (purged errors)
[2026-01-09 02:47:01] 2026-01-09 07:46:10,652 | INFO     | overall cleanup function is called
[2026-01-09 02:47:01] 2026-01-09 07:46:11,747 | INFO     | --- collectZombieJob: --- 10, [772234]
[2026-01-09 02:47:01] 2026-01-09 07:46:11,747 | INFO     | zombie collector waiting for pid 772234
[2026-01-09 02:47:01] 2026-01-09 07:46:11,747 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 02:47:01] 2026-01-09 07:46:11,748 | INFO     | collected zombie processes
[2026-01-09 02:47:01] 2026-01-09 07:46:11,748 | INFO     | will attempt to kill all subprocesses of pid=772234
[2026-01-09 02:47:01] 2026-01-09 07:46:13,561 | INFO     | process IDs to be killed: [772234] (in reverse order)
[2026-01-09 02:47:01] 2026-01-09 07:46:14,485 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 02:47:01] 2026-01-09 07:46:14,486 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 02:47:01] 2026-01-09 07:46:14,523 | INFO     | did not find any defunct processes belonging to 772234
[2026-01-09 02:47:01] 2026-01-09 07:46:14,558 | INFO     | did not find any defunct processes belonging to 772234
[2026-01-09 02:47:01] 2026-01-09 07:46:14,558 | INFO     | ready for new job
[2026-01-09 02:47:01] 2026-01-09 07:46:14,558 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 02:47:01] 2026-01-09 07:46:14,573 | INFO     | ***************************************
[2026-01-09 02:47:01] 2026-01-09 07:46:14,573 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 02:47:01] 2026-01-09 07:46:14,573 | INFO     | ***************************************
[2026-01-09 02:47:01] 2026-01-09 07:46:14,573 | INFO     | 
[2026-01-09 02:47:01] 2026-01-09 07:46:14,588 | INFO     | architecture information:
[2026-01-09 02:47:01] 2026-01-09 07:46:14,592 | INFO     | executing command: cat /etc/os-release
[2026-01-09 02:47:01] 2026-01-09 07:46:14,760 | INFO     | cat /etc/os-release:
[2026-01-09 02:47:01] NAME="CentOS Linux"
[2026-01-09 02:47:01] VERSION="7 (Core)"
[2026-01-09 02:47:01] ID="centos"
[2026-01-09 02:47:01] ID_LIKE="rhel fedora"
[2026-01-09 02:47:01] VERSION_ID="7"
[2026-01-09 02:47:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 02:47:01] ANSI_COLOR="0;31"
[2026-01-09 02:47:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 02:47:01] HOME_URL="https://www.centos.org/"
[2026-01-09 02:47:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 02:47:01] 
[2026-01-09 02:47:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 02:47:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 02:47:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 02:47:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 02:47:01] 
[2026-01-09 02:47:01] 2026-01-09 07:46:14,760 | INFO     | ***************************************
[2026-01-09 02:47:01] 2026-01-09 07:46:15,263 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 02:47:01] 2026-01-09 07:46:15,421 | INFO     | sufficient remaining disk space (73136078848 B)
[2026-01-09 02:47:01] 2026-01-09 07:46:15,421 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 02:47:01] 2026-01-09 07:46:15,421 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 02:47:01] 2026-01-09 07:46:15,421 | INFO     | update_server=False
[2026-01-09 02:47:01] 2026-01-09 07:46:15,421 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 02:47:01] 2026-01-09 07:46:15,421 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 02:47:01] 2026-01-09 07:46:15,422 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 02:47:01] 2026-01-09 07:46:15,526 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 02:47:01] 2026-01-09 07:46:15,527 | INFO     | aborting loop
[2026-01-09 02:47:01] 2026-01-09 07:46:16,432 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 02:47:01] 2026-01-09 07:46:16,479 | INFO     | all data control threads have been joined
[2026-01-09 02:47:01] 2026-01-09 07:46:16,480 | INFO     | [job] queue monitor thread has finished
[2026-01-09 02:47:01] 2026-01-09 07:46:16,486 | INFO     | [job] retrieve thread has finished
[2026-01-09 02:47:01] 2026-01-09 07:46:16,532 | INFO     | [job] job monitor thread has finished
[2026-01-09 02:47:01] 2026-01-09 07:46:16,589 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 02:47:01] 2026-01-09 07:46:16,618 | INFO     | all job control threads have been joined
[2026-01-09 02:47:01] 2026-01-09 07:46:16,770 | INFO     | all payload control threads have been joined
[2026-01-09 02:47:01] 2026-01-09 07:46:16,773 | INFO     | [data] copytool_in thread has finished
[2026-01-09 02:47:01] 2026-01-09 07:46:16,777 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 02:47:01] 2026-01-09 07:46:16,785 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 02:47:01] 2026-01-09 07:46:16,788 | INFO     | [job] validate thread has finished
[2026-01-09 02:47:01] 2026-01-09 07:46:17,472 | INFO     | [payload] failed_post thread has finished
[2026-01-09 02:47:01] 2026-01-09 07:46:17,479 | INFO     | [payload] validate_post thread has finished
[2026-01-09 02:47:01] 2026-01-09 07:46:17,511 | INFO     | [data] control thread has finished
[2026-01-09 02:47:01] 2026-01-09 07:46:17,512 | INFO     | [data] copytool_out thread has finished
[2026-01-09 02:47:01] 2026-01-09 07:46:17,624 | INFO     | [job] control thread has finished
[2026-01-09 02:47:01] 2026-01-09 07:46:17,795 | INFO     | [payload] control thread has finished
[2026-01-09 02:47:01] 2026-01-09 07:46:18,624 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 02:47:01] 2026-01-09 07:46:22,633 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 02:47:01] 2026-01-09 07:46:40,070 | INFO     | [monitor] cgroup control has ended
[2026-01-09 02:47:01] 2026-01-09 07:46:40,556 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140187518170944)>', '<ExcThread(monitor, started 140186591688448)>']
[2026-01-09 02:47:01] 2026-01-09 07:46:45,688 | INFO     | all workflow threads have been joined
[2026-01-09 02:47:01] 2026-01-09 07:46:45,689 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 02:47:01] 2026-01-09 07:46:45,690 | INFO     | traces error code: 0
[2026-01-09 02:47:01] 2026-01-09 07:46:45,690 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 02:47:01] 2026-01-09 07:46:54,900 | INFO     | PID=758769 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 02:47:01] 2026-01-09 07:46:54,900 | INFO     | .. there are 12 such processes running
[2026-01-09 02:47:01] 2026-01-09 07:46:55,008 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 02:47:01] 2026-01-09 07:46:55,008 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 02:47:01] 2026-01-09 07:46:55,008 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 02:47:01] 2026-01-09 07:46:55,009 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 02:47:01] 2026-01-09 07:46:55,009 | INFO     | [monitor] control thread has ended
[2026-01-09 02:47:01] 2026-01-09 07:46:58,847 [wrapper] ==== pilot stdout END ====
[2026-01-09 02:47:01] 2026-01-09 07:46:58,916 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 02:47:01] 2026-01-09 07:46:58,934 [wrapper] pilotpid: 758769
[2026-01-09 02:47:01] 2026-01-09 07:46:58,995 [wrapper] Pilot exit status: 0
[2026-01-09 02:47:01] 2026-01-09 07:46:59,161 [wrapper] pandaids: 6963078418 6963078418
[2026-01-09 02:47:01] 2026-01-09 07:46:59,893 [wrapper] cleanup supervisor_pilot 1743337 758770
[2026-01-09 02:47:01] 2026-01-09 07:46:59,958 [wrapper] Test setup, not cleaning
[2026-01-09 02:47:01] 2026-01-09 07:47:00,011 [wrapper] apfmon messages muted
[2026-01-09 02:47:01] 2026-01-09 07:47:00,090 [wrapper] ==== wrapper stdout END ====
[2026-01-09 02:47:01] 2026-01-09 07:47:00,136 [wrapper] ==== wrapper stderr END ====
[2026-01-09 02:47:01]  *** Error codes and diagnostics ***
[2026-01-09 02:47:01]     "exeErrorCode": 0,
[2026-01-09 02:47:01]     "exeErrorDiag": "",
[2026-01-09 02:47:01]     "pilotErrorCode": 0,
[2026-01-09 02:47:01]     "pilotErrorDiag": "",
[2026-01-09 02:47:01]  *** Listing of results directory ***
[2026-01-09 02:47:01] total 658844
[2026-01-09 02:47:01] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 02:47:01] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 06:06 pilot3.tar.gz
[2026-01-09 02:47:01] -rwx------. 1 boincer umatlas     36322 Jan  8 06:07 runpilot2-wrapper.sh
[2026-01-09 02:47:01] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 06:09 queuedata.json
[2026-01-09 02:47:01] -rw-r--r--. 1 boincer umatlas       100 Jan  8 13:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 02:47:01] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 13:11 run_atlas
[2026-01-09 02:47:01] -rw-r--r--. 1 boincer umatlas       105 Jan  8 13:11 job.xml
[2026-01-09 02:47:01] -rw-r--r--. 3 boincer umatlas 222909428 Jan  8 13:11 EVNT.47898824._000968.pool.root.1
[2026-01-09 02:47:01] -rw-r--r--. 3 boincer umatlas 222909428 Jan  8 13:11 ATLAS.root_0
[2026-01-09 02:47:01] -rw-r--r--. 2 boincer umatlas    592397 Jan  8 13:11 input.tar.gz
[2026-01-09 02:47:01] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 13:11 start_atlas.sh
[2026-01-09 02:47:01] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 13:11 shared
[2026-01-09 02:47:01] -rw-r--r--. 1 boincer umatlas         0 Jan  8 13:11 boinc_lockfile
[2026-01-09 02:47:01] -rw-r--r--. 1 boincer umatlas      2518 Jan  8 19:30 pandaJob.out
[2026-01-09 02:47:01] -rw-------. 1 boincer umatlas        57 Jan  8 19:30 setup.sh.local
[2026-01-09 02:47:01] -rw-------. 1 boincer umatlas    989837 Jan  8 19:30 agis_schedconf.cvmfs.json
[2026-01-09 02:47:01] -rw-r--r--. 1 boincer umatlas      6841 Jan  9 02:39 init_data.xml
[2026-01-09 02:47:01] -rw-------. 1 boincer umatlas 217372354 Jan  9 02:41 HITS.47898826._024577.pool.root.1
[2026-01-09 02:47:01] -rw-r--r--. 1 boincer umatlas       531 Jan  9 02:41 boinc_task_state.xml
[2026-01-09 02:47:01] -rw-------. 1 boincer umatlas      1037 Jan  9 02:45 memory_monitor_summary.json
[2026-01-09 02:47:01] -rw-------. 1 boincer umatlas   1516240 Jan  9 02:45 agis_ddmendpoints.agis.ALL.json
[2026-01-09 02:47:01] -rw-------. 1 boincer umatlas    596112 Jan  9 02:45 log.47898826._024577.job.log.tgz.1
[2026-01-09 02:47:01] -rw-------. 1 boincer umatlas      7819 Jan  9 02:46 heartbeat.json
[2026-01-09 02:47:01] -rw-------. 1 boincer umatlas        96 Jan  9 02:46 pilot_heartbeat.json
[2026-01-09 02:47:01] -rw-------. 1 boincer umatlas       822 Jan  9 02:46 pilotlog.txt
[2026-01-09 02:47:01] -rw-r--r--. 1 boincer umatlas        28 Jan  9 02:46 wrapper_checkpoint.txt
[2026-01-09 02:47:01] -rw-------. 1 boincer umatlas   3177764 Jan  9 02:47 log.47898826._024577.job.log.1
[2026-01-09 02:47:01] -rw-------. 1 boincer umatlas       357 Jan  9 02:47 output.list
[2026-01-09 02:47:01] -rw-r--r--. 1 boincer umatlas       620 Jan  9 02:47 runtime_log
[2026-01-09 02:47:01] -rw-------. 1 boincer umatlas   3788800 Jan  9 02:47 result.tar.gz
[2026-01-09 02:47:01] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 02:47 boinc_mmap_file
[2026-01-09 02:47:01] -rw-r--r--. 1 boincer umatlas      9433 Jan  9 02:47 runtime_log.err
[2026-01-09 02:47:01] -rw-------. 1 boincer umatlas       783 Jan  9 02:47 JV7LDmc22x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqFkKDmCtKQAo.diag
[2026-01-09 02:47:01] -rw-r--r--. 1 boincer umatlas     23053 Jan  9 02:47 stderr.txt
[2026-01-09 02:47:21] HITS file was successfully produced:
[2026-01-09 02:47:21] -rw-------. 1 boincer umatlas 217372354 Jan  9 02:41 shared/HITS.pool.root.1
[2026-01-09 02:47:21]  *** Contents of shared directory: ***
[2026-01-09 02:47:21] total 434272
[2026-01-09 02:47:21] -rw-r--r--. 3 boincer umatlas 222909428 Jan  8 13:11 ATLAS.root_0
[2026-01-09 02:47:21] -rw-r--r--. 2 boincer umatlas    592397 Jan  8 13:11 input.tar.gz
[2026-01-09 02:47:21] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 13:11 start_atlas.sh
[2026-01-09 02:47:21] -rw-------. 1 boincer umatlas 217372354 Jan  9 02:41 HITS.pool.root.1
[2026-01-09 02:47:21] -rw-------. 1 boincer umatlas   3788800 Jan  9 02:47 result.tar.gz
02:47:23 (751468): run_atlas exited; CPU time 56229.670454
02:47:23 (751468): called boinc_finish(0)

</stderr_txt>
]]>

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