Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:42:21 (154981): wrapper (7.7.26015): starting
09:42:21 (154981): wrapper: running run_atlas (--nthreads 4)
[2026-01-11 09:42:21] Arguments: --nthreads 4
[2026-01-11 09:42:21] Threads: 4
[2026-01-11 09:42:21] Checking for CVMFS
[2026-01-11 09:42:21] No cvmfs_config command found, will try listing directly
[2026-01-11 09:42:21] CVMFS is ok
[2026-01-11 09:42:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 09:42:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 09:42:21] Further information can be found at the LHC@home message board.
[2026-01-11 09:42:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 09:42:21] Checking for apptainer binary...
[2026-01-11 09:42:21] which: no apptainer in ((null))
[2026-01-11 09:42:21] apptainer is not installed, using version from CVMFS
[2026-01-11 09:42:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 09:42:21] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-01-11 09:42:21] apptainer works
[2026-01-11 09:42:21] Set ATHENA_PROC_NUMBER=4
[2026-01-11 09:42:21] Set ATHENA_CORE_NUMBER=4
[2026-01-11 09:42:21] Starting ATLAS job with PandaID=6963074794
[2026-01-11 09:42:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 13:50:56]  *** The last 200 lines of the pilot log: ***
[2026-01-11 13:50:56] 2026-01-11 12:33:57,467 | INFO     | monitor loop #943: job 0:6963074794 is in state 'finished'
[2026-01-11 13:50:56] 2026-01-11 12:33:57,467 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 13:50:56] 2026-01-11 12:33:58,525 | INFO     | time since job start (13882s) is within the limit (174528.0s)
[2026-01-11 13:50:56] 2026-01-11 12:33:59,972 | INFO     | monitor loop #944: job 0:6963074794 is in state 'finished'
[2026-01-11 13:50:56] 2026-01-11 12:33:59,972 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 13:50:56] 2026-01-11 12:34:00,533 | INFO     | time since job start (13884s) is within the limit (174528.0s)
[2026-01-11 13:50:56] 2026-01-11 12:34:02,475 | INFO     | monitor loop #945: job 0:6963074794 is in state 'finished'
[2026-01-11 13:50:56] 2026-01-11 12:34:02,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 13:50:56] 2026-01-11 12:34:02,538 | INFO     | time since job start (13886s) is within the limit (174528.0s)
[2026-01-11 13:50:56] 2026-01-11 12:34:02,973 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 13:50:56] 2026-01-11 12:34:02,995 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2731.1433281249997
[2026-01-11 13:50:56] 2026-01-11 12:34:03,020 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6963074794/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 13:50:56] 2026-01-11 12:34:03,021 | INFO     | extracted standard info from prmon json
[2026-01-11 13:50:56] 2026-01-11 12:34:03,021 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 13:50:56] 2026-01-11 12:34:03,021 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 13:50:56] 2026-01-11 12:34:03,022 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 13:50:56] 2026-01-11 12:34:03,022 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 13:50:56] 2026-01-11 12:34:03,026 | INFO     | fitting pss+swap vs Time
[2026-01-11 13:50:56] 2026-01-11 12:34:03,027 | INFO     | sum of square deviations: 3627000098.0
[2026-01-11 13:50:56] 2026-01-11 12:34:03,028 | INFO     | sum of deviations: 11446197928.999998
[2026-01-11 13:50:56] 2026-01-11 12:34:03,028 | INFO     | mean x: 1768127884.0
[2026-01-11 13:50:56] 2026-01-11 12:34:03,028 | INFO     | mean y: 2339887.7356828195
[2026-01-11 13:50:56] 2026-01-11 12:34:03,028 | INFO     | intersect: -5577572209.64964
[2026-01-11 13:50:56] 2026-01-11 12:34:03,029 | INFO     | chi2: 1.320640553521408
[2026-01-11 13:50:56] 2026-01-11 12:34:03,029 | INFO     | sum of square deviations: 3392567795.5
[2026-01-11 13:50:56] 2026-01-11 12:34:03,031 | INFO     | sum of deviations: 11067197853.0
[2026-01-11 13:50:56] 2026-01-11 12:34:03,031 | INFO     | mean x: 1768127731.5
[2026-01-11 13:50:56] 2026-01-11 12:34:03,031 | INFO     | mean y: 2339641.2522522523
[2026-01-11 13:50:56] 2026-01-11 12:34:03,031 | INFO     | intersect: -5765627460.198871
[2026-01-11 13:50:56] 2026-01-11 12:34:03,031 | INFO     | chi2: 1.3210648460715133
[2026-01-11 13:50:56] 2026-01-11 12:34:03,031 | INFO     | current chi2=1.3210648460715133 (change=-0.032127784428085414 %)
[2026-01-11 13:50:56] 2026-01-11 12:34:03,031 | INFO     | right removable region: 221
[2026-01-11 13:50:56] 2026-01-11 12:34:03,032 | INFO     | sum of square deviations: 3392567795.5
[2026-01-11 13:50:56] 2026-01-11 12:34:03,033 | INFO     | sum of deviations: -14753126696.0
[2026-01-11 13:50:56] 2026-01-11 12:34:03,033 | INFO     | mean x: 1768128036.5
[2026-01-11 13:50:56] 2026-01-11 12:34:03,033 | INFO     | mean y: 2356707.3243243243
[2026-01-11 13:50:56] 2026-01-11 12:34:03,034 | INFO     | intersect: 7691345847.595792
[2026-01-11 13:50:56] 2026-01-11 12:34:03,034 | INFO     | chi2: 0.05892486345478146
[2026-01-11 13:50:56] 2026-01-11 12:34:03,034 | INFO     | current chi2=0.05892486345478146 (change=95.53816038000183 %)
[2026-01-11 13:50:56] 2026-01-11 12:34:03,034 | INFO     | sum of square deviations: 3168461268.0
[2026-01-11 13:50:56] 2026-01-11 12:34:03,036 | INFO     | sum of deviations: -11247637682.999998
[2026-01-11 13:50:56] 2026-01-11 12:34:03,036 | INFO     | mean x: 1768128189.0
[2026-01-11 13:50:56] 2026-01-11 12:34:03,036 | INFO     | mean y: 2354308.6820276496
[2026-01-11 13:50:56] 2026-01-11 12:34:03,036 | INFO     | intersect: 6278986264.96414
[2026-01-11 13:50:56] 2026-01-11 12:34:03,036 | INFO     | chi2: 0.05075233429516672
[2026-01-11 13:50:56] 2026-01-11 12:34:03,037 | INFO     | current chi2=0.05075233429516672 (change=13.869407038823747 %)
[2026-01-11 13:50:56] 2026-01-11 12:34:03,037 | INFO     | left removable region: 20
[2026-01-11 13:50:56] 2026-01-11 12:34:03,037 | INFO     | sum of square deviations: 2518000700.0
[2026-01-11 13:50:56] 2026-01-11 12:34:03,038 | INFO     | sum of deviations: -4053886150.0
[2026-01-11 13:50:56] 2026-01-11 12:34:03,038 | INFO     | mean x: 1768128311.0
[2026-01-11 13:50:56] 2026-01-11 12:34:03,039 | INFO     | mean y: 2348976.154228856
[2026-01-11 13:50:56] 2026-01-11 12:34:03,039 | INFO     | intersect: 2848968864.4591813
[2026-01-11 13:50:56] 2026-01-11 12:34:03,039 | INFO     | chi2: 0.034096184329192265
[2026-01-11 13:50:56] 2026-01-11 12:34:03,039 | INFO     | current memory leak: -1.61 B/s (using 201 data points, chi2=0.03)
[2026-01-11 13:50:56] 2026-01-11 12:34:03,040 | INFO     | could have reported an average CPU frequency of 2668 MHz (11 samples)
[2026-01-11 13:50:56] 2026-01-11 12:34:03,040 | INFO     | ..............................
[2026-01-11 13:50:56] 2026-01-11 12:34:03,040 | INFO     | . Timing measurements:
[2026-01-11 13:50:56] 2026-01-11 12:34:03,043 | INFO     | . get job = 0 s
[2026-01-11 13:50:56] 2026-01-11 12:34:03,043 | INFO     | . initial setup = 1 s
[2026-01-11 13:50:56] 2026-01-11 12:34:03,043 | INFO     | . payload setup = 9 s
[2026-01-11 13:50:56] 2026-01-11 12:34:03,043 | INFO     | . stage-in = 0 s
[2026-01-11 13:50:56] 2026-01-11 12:34:03,044 | INFO     | . payload execution = 13843 s
[2026-01-11 13:50:56] 2026-01-11 12:34:03,044 | INFO     | . stage-out = 1 s
[2026-01-11 13:50:56] 2026-01-11 12:34:03,044 | INFO     | . log creation = 0 s
[2026-01-11 13:50:56] 2026-01-11 12:34:03,044 | INFO     | ..............................
[2026-01-11 13:50:56] 2026-01-11 12:34:03,222 | INFO     | 
[2026-01-11 13:50:56] 2026-01-11 12:34:03,222 | INFO     | job summary report
[2026-01-11 13:50:56] 2026-01-11 12:34:03,222 | INFO     | --------------------------------------------------
[2026-01-11 13:50:56] 2026-01-11 12:34:03,222 | INFO     | PanDA job id: 6963074794
[2026-01-11 13:50:56] 2026-01-11 12:34:03,222 | INFO     | task id: 47898826
[2026-01-11 13:50:56] 2026-01-11 12:34:03,222 | INFO     | errors: (none)
[2026-01-11 13:50:56] 2026-01-11 12:34:03,222 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 13:50:56] 2026-01-11 12:34:03,222 | INFO     | pilot state: finished 
[2026-01-11 13:50:56] 2026-01-11 12:34:03,222 | INFO     | transexitcode: 0
[2026-01-11 13:50:56] 2026-01-11 12:34:03,223 | INFO     | exeerrorcode: 0
[2026-01-11 13:50:56] 2026-01-11 12:34:03,223 | INFO     | exeerrordiag: 
[2026-01-11 13:50:56] 2026-01-11 12:34:03,223 | INFO     | exitcode: 0
[2026-01-11 13:50:56] 2026-01-11 12:34:03,223 | INFO     | exitmsg: OK
[2026-01-11 13:50:56] 2026-01-11 12:34:03,223 | INFO     | cpuconsumptiontime: 53222 s
[2026-01-11 13:50:56] 2026-01-11 12:34:03,223 | INFO     | nevents: 400
[2026-01-11 13:50:56] 2026-01-11 12:34:03,223 | INFO     | neventsw: 0
[2026-01-11 13:50:56] 2026-01-11 12:34:03,223 | INFO     | pid: 167200
[2026-01-11 13:50:56] 2026-01-11 12:34:03,223 | INFO     | pgrp: 167200
[2026-01-11 13:50:56] 2026-01-11 12:34:03,223 | INFO     | corecount: 4
[2026-01-11 13:50:56] 2026-01-11 12:34:03,223 | INFO     | event service: False
[2026-01-11 13:50:56] 2026-01-11 12:34:03,223 | INFO     | sizes: {0: 2283810, 1: 2284009, 8: 2284271, 11: 2284299, 13857: 2315380, 13859: 2324402, 13861: 2324586, 13868: 2324780}
[2026-01-11 13:50:56] 2026-01-11 12:34:03,223 | INFO     | --------------------------------------------------
[2026-01-11 13:50:56] 2026-01-11 12:34:03,224 | INFO     | 
[2026-01-11 13:50:56] 2026-01-11 12:34:03,224 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2026-01-11 13:50:56] 2026-01-11 12:34:03,252 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,253 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,253 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,253 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,253 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,253 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,253 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,253 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,254 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,254 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,254 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,254 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,254 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,254 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,254 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,254 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,254 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,254 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 13:50:56] 2026-01-11 12:34:03,254 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,255 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 13:50:56] 2026-01-11 12:34:03,255 | INFO     | job 6963074794 has completed (purged errors)
[2026-01-11 13:50:56] 2026-01-11 12:34:03,255 | INFO     | overall cleanup function is called
[2026-01-11 13:50:56] 2026-01-11 12:34:04,264 | INFO     | --- collectZombieJob: --- 10, [167200]
[2026-01-11 13:50:56] 2026-01-11 12:34:04,264 | INFO     | zombie collector waiting for pid 167200
[2026-01-11 13:50:56] 2026-01-11 12:34:04,264 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 13:50:56] 2026-01-11 12:34:04,264 | INFO     | collected zombie processes
[2026-01-11 13:50:56] 2026-01-11 12:34:04,264 | INFO     | will attempt to kill all subprocesses of pid=167200
[2026-01-11 13:50:56] 2026-01-11 12:34:05,063 | INFO     | process IDs to be killed: [167200] (in reverse order)
[2026-01-11 13:50:56] 2026-01-11 12:34:05,312 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 13:50:56] 2026-01-11 12:34:05,312 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 13:50:56] 2026-01-11 12:34:05,339 | INFO     | did not find any defunct processes belonging to 167200
[2026-01-11 13:50:56] 2026-01-11 12:34:05,366 | INFO     | did not find any defunct processes belonging to 167200
[2026-01-11 13:50:56] 2026-01-11 12:34:05,367 | INFO     | ready for new job
[2026-01-11 13:50:56] 2026-01-11 12:34:05,367 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 13:50:56] 2026-01-11 12:34:05,369 | INFO     | ***************************************
[2026-01-11 13:50:56] 2026-01-11 12:34:05,369 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 13:50:56] 2026-01-11 12:34:05,370 | INFO     | ***************************************
[2026-01-11 13:50:56] 2026-01-11 12:34:05,370 | INFO     | 
[2026-01-11 13:50:56] 2026-01-11 12:34:05,377 | INFO     | architecture information:
[2026-01-11 13:50:56] 2026-01-11 12:34:05,377 | INFO     | executing command: cat /etc/os-release
[2026-01-11 13:50:56] 2026-01-11 12:34:05,402 | INFO     | cat /etc/os-release:
[2026-01-11 13:50:56] NAME="CentOS Linux"
[2026-01-11 13:50:56] VERSION="7 (Core)"
[2026-01-11 13:50:56] ID="centos"
[2026-01-11 13:50:56] ID_LIKE="rhel fedora"
[2026-01-11 13:50:56] VERSION_ID="7"
[2026-01-11 13:50:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 13:50:56] ANSI_COLOR="0;31"
[2026-01-11 13:50:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 13:50:56] HOME_URL="https://www.centos.org/"
[2026-01-11 13:50:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 13:50:56] 
[2026-01-11 13:50:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 13:50:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 13:50:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 13:50:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 13:50:56] 
[2026-01-11 13:50:56] 2026-01-11 12:34:05,402 | INFO     | ***************************************
[2026-01-11 13:50:56] 2026-01-11 12:34:05,905 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2026-01-11 13:50:56] 2026-01-11 12:34:05,927 | INFO     | sufficient remaining disk space (3352315297792 B)
[2026-01-11 13:50:56] 2026-01-11 12:34:05,928 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 13:50:56] 2026-01-11 12:34:05,928 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 13:50:56] 2026-01-11 12:34:05,928 | INFO     | update_server=False
[2026-01-11 13:50:56] 2026-01-11 12:34:05,928 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 13:50:56] 2026-01-11 12:34:05,983 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 13:50:56] 2026-01-11 12:34:05,983 | INFO     | aborting loop
[2026-01-11 13:50:56] 2026-01-11 12:34:06,036 | INFO     | all job control threads have been joined
[2026-01-11 13:50:56] 2026-01-11 12:34:06,296 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 13:50:56] 2026-01-11 12:34:06,747 | INFO     | all data control threads have been joined
[2026-01-11 13:50:56] 2026-01-11 12:34:06,838 | INFO     | all payload control threads have been joined
[2026-01-11 13:50:56] 2026-01-11 12:34:06,933 | INFO     | [job] retrieve thread has finished
[2026-01-11 13:50:56] 2026-01-11 12:34:06,989 | INFO     | [job] job monitor thread has finished
[2026-01-11 13:50:56] 2026-01-11 12:34:07,041 | INFO     | [job] control thread has finished
[2026-01-11 13:50:56] 2026-01-11 12:34:07,085 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 13:50:56] 2026-01-11 12:34:07,135 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 13:50:56] 2026-01-11 12:34:07,153 | INFO     | [job] validate thread has finished
[2026-01-11 13:50:56] 2026-01-11 12:34:07,214 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 13:50:56] 2026-01-11 12:34:07,273 | INFO     | [payload] validate_post thread has finished
[2026-01-11 13:50:56] 2026-01-11 12:34:07,379 | INFO     | [data] copytool_in thread has finished
[2026-01-11 13:50:56] 2026-01-11 12:34:07,549 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 13:50:56] 2026-01-11 12:34:07,752 | INFO     | [data] control thread has finished
[2026-01-11 13:50:56] 2026-01-11 12:34:07,774 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 13:50:56] 2026-01-11 12:34:07,811 | INFO     | [payload] failed_post thread has finished
[2026-01-11 13:50:56] 2026-01-11 12:34:07,844 | INFO     | [payload] control thread has finished
[2026-01-11 13:50:56] 2026-01-11 12:34:08,155 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 13:50:56] 2026-01-11 12:34:09,141 | INFO     | [data] copytool_out thread has finished
[2026-01-11 13:50:56] 2026-01-11 12:34:09,160 | INFO     | [job] queue monitor thread has finished
[2026-01-11 13:50:56] 2026-01-11 12:34:10,302 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 13:50:56] 2026-01-11 12:34:36,572 | INFO     | PID=158988 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 13:50:56] 2026-01-11 12:34:36,572 | INFO     | .. there are 7 such processes running
[2026-01-11 13:50:56] 2026-01-11 12:34:36,572 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 13:50:56] 2026-01-11 12:34:36,572 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 13:50:56] 2026-01-11 12:34:36,572 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 13:50:56] 2026-01-11 12:34:58,745 | INFO     | [monitor] cgroup control has ended
[2026-01-11 13:50:56] 2026-01-11 12:35:00,201 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22857679624000)>', '<ExcThread(monitor, started 22857440524032)>']
[2026-01-11 13:50:56] 2026-01-11 12:35:00,694 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 13:50:56] 2026-01-11 12:35:00,694 | INFO     | [monitor] control thread has ended
[2026-01-11 13:50:56] 2026-01-11 12:35:05,226 | INFO     | all workflow threads have been joined
[2026-01-11 13:50:56] 2026-01-11 12:35:05,227 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 13:50:56] 2026-01-11 12:35:05,227 | INFO     | traces error code: 0
[2026-01-11 13:50:56] 2026-01-11 12:35:05,227 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 13:50:56] 2026-01-11 12:35:05,373 [wrapper] ==== pilot stdout END ====
[2026-01-11 13:50:56] 2026-01-11 12:35:05,377 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 13:50:56] 2026-01-11 12:35:05,381 [wrapper] pilotpid: 158988
[2026-01-11 13:50:56] 2026-01-11 12:35:05,385 [wrapper] Pilot exit status: 0
[2026-01-11 13:50:56] 2026-01-11 12:35:05,399 [wrapper] pandaids: 6963074794
[2026-01-11 13:50:56] 2026-01-11 12:35:05,579 [wrapper] cleanup supervisor_pilot  560245 158989
[2026-01-11 13:50:56] 2026-01-11 12:35:05,584 [wrapper] Test setup, not cleaning
[2026-01-11 13:50:56] 2026-01-11 12:35:05,588 [wrapper] apfmon messages muted
[2026-01-11 13:50:56] 2026-01-11 12:35:05,593 [wrapper] ==== wrapper stdout END ====
[2026-01-11 13:50:56] 2026-01-11 12:35:05,597 [wrapper] ==== wrapper stderr END ====
[2026-01-11 13:50:56]  *** Error codes and diagnostics ***
[2026-01-11 13:50:56]     "exeErrorCode": 0,
[2026-01-11 13:50:56]     "exeErrorDiag": "",
[2026-01-11 13:50:56]     "pilotErrorCode": 0,
[2026-01-11 13:50:56]     "pilotErrorDiag": "",
[2026-01-11 13:50:56]  *** Listing of results directory ***
[2026-01-11 13:50:56] total 442164
[2026-01-11 13:50:56] -rw-r--r-- 1 boinc boinc      5112 Jan  8 12:06 queuedata.json
[2026-01-11 13:50:56] -rw-r--r-- 1 boinc boinc    579449 Jan  8 12:06 pilot3.tar.gz
[2026-01-11 13:50:56] -rwx------ 1 boinc boinc     36322 Jan  8 12:06 runpilot2-wrapper.sh
[2026-01-11 13:50:56] -rw-r--r-- 1 boinc boinc       100 Jan 11 09:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 13:50:56] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 09:42 run_atlas
[2026-01-11 13:50:56] -rw-r--r-- 1 boinc boinc       105 Jan 11 09:42 job.xml
[2026-01-11 13:50:56] -rw-r--r-- 1 boinc boinc      6692 Jan 11 09:42 init_data.xml
[2026-01-11 13:50:56] -rw-r--r-- 2 boinc boinc 226900583 Jan 11 09:42 EVNT.47898824._000923.pool.root.1
[2026-01-11 13:50:56] -rw-r--r-- 2 boinc boinc     15847 Jan 11 09:42 start_atlas.sh
[2026-01-11 13:50:56] drwxrwx--x 2 boinc boinc      4096 Jan 11 09:42 shared
[2026-01-11 13:50:56] -rw-r--r-- 2 boinc boinc    592401 Jan 11 09:42 input.tar.gz
[2026-01-11 13:50:56] -rw-r--r-- 1 boinc boinc         0 Jan 11 09:42 boinc_lockfile
[2026-01-11 13:50:56] -rw-r--r-- 1 boinc boinc      2519 Jan 11 09:42 pandaJob.out
[2026-01-11 13:50:56] -rw------- 1 boinc boinc    989548 Jan 11 09:42 agis_schedconf.cvmfs.json
[2026-01-11 13:50:56] drwx------ 5 boinc boinc      4096 Jan 11 09:42 pilot3
[2026-01-11 13:50:56] -rw------- 1 boinc boinc 217330196 Jan 11 13:33 HITS.47898826._023160.pool.root.1
[2026-01-11 13:50:56] -rw-r--r-- 1 boinc boinc       529 Jan 11 13:33 boinc_task_state.xml
[2026-01-11 13:50:56] -rw------- 1 boinc boinc      1030 Jan 11 13:33 memory_monitor_summary.json
[2026-01-11 13:50:56] -rw------- 1 boinc boinc   1516240 Jan 11 13:33 agis_ddmendpoints.agis.ALL.json
[2026-01-11 13:50:56] -rw------- 1 boinc boinc    394190 Jan 11 13:33 log.47898826._023160.job.log.tgz.1
[2026-01-11 13:50:56] -rw------- 1 boinc boinc        95 Jan 11 13:33 pilot_heartbeat.json
[2026-01-11 13:50:56] -rw------- 1 boinc boinc      7787 Jan 11 13:34 heartbeat.json
[2026-01-11 13:50:56] -rw------- 1 boinc boinc      4835 Jan 11 13:35 pilotlog.txt
[2026-01-11 13:50:56] -rw------- 1 boinc boinc   1919961 Jan 11 13:35 log.47898826._023160.job.log.1
[2026-01-11 13:50:56] -rw------- 1 boinc boinc       357 Jan 11 13:35 output.list
[2026-01-11 13:50:56] -rw-r--r-- 1 boinc boinc       620 Jan 11 13:35 runtime_log
[2026-01-11 13:50:56] -rw------- 1 boinc boinc   2334720 Jan 11 13:35 result.tar.gz
[2026-01-11 13:50:56] -rw------- 1 boinc boinc       666 Jan 11 13:35 vLaNDm112x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm39jKDmu1AkZn.diag
[2026-01-11 13:50:56] -rw-r--r-- 1 boinc boinc      9223 Jan 11 13:35 runtime_log.err
[2026-01-11 13:50:56] -rw-r--r-- 1 boinc boinc        26 Jan 11 13:50 wrapper_checkpoint.txt
[2026-01-11 13:50:56] -rw-r--r-- 1 boinc boinc      8192 Jan 11 13:50 boinc_mmap_file
[2026-01-11 13:50:56] -rw-r--r-- 1 boinc boinc     21128 Jan 11 13:50 stderr.txt
[2026-01-11 13:50:56] HITS file was successfully produced:
[2026-01-11 13:50:56] -rw------- 1 boinc boinc 217330196 Jan 11 13:33 shared/HITS.pool.root.1
[2026-01-11 13:50:56]  *** Contents of shared directory: ***
[2026-01-11 13:50:56] total 436708
[2026-01-11 13:50:56] -rw-r--r-- 2 boinc boinc 226900583 Jan 11 09:42 ATLAS.root_0
[2026-01-11 13:50:56] -rw-r--r-- 2 boinc boinc     15847 Jan 11 09:42 start_atlas.sh
[2026-01-11 13:50:56] -rw-r--r-- 2 boinc boinc    592401 Jan 11 09:42 input.tar.gz
[2026-01-11 13:50:56] -rw------- 1 boinc boinc 217330196 Jan 11 13:33 HITS.pool.root.1
[2026-01-11 13:50:56] -rw------- 1 boinc boinc   2334720 Jan 11 13:35 result.tar.gz
13:50:57 (154981): run_atlas exited; CPU time 54247.853246
13:50:57 (154981): called boinc_finish(0)

</stderr_txt>
]]>

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