Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:43:37 (189131): wrapper (7.7.26015): starting
00:43:37 (189131): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 00:43:37] Arguments: --nthreads 4
[2026-01-09 00:43:37] Threads: 4
[2026-01-09 00:43:37] Checking for CVMFS
[2026-01-09 00:43:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:43:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:43:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:43:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:43:37] 2.9.2.0 3067 609 74336 154924 3 56 20894333 36864001 0 130560 0 487308 99.992 20640 9754 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 00:43:37] CVMFS is ok
[2026-01-09 00:43:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:43:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:43:37] Further information can be found at the LHC@home message board.
[2026-01-09 00:43:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:43:37] Checking for apptainer binary...
[2026-01-09 00:43:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:43:37] Running /usr/bin/apptainer --version
[2026-01-09 00:43:37] apptainer version 1.4.1-1.1
[2026-01-09 00:43:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:43:38] thA383a
[2026-01-09 00:43:38] apptainer works
[2026-01-09 00:43:38] Set ATHENA_PROC_NUMBER=4
[2026-01-09 00:43:38] Set ATHENA_CORE_NUMBER=4
[2026-01-09 00:43:38] Starting ATLAS job with PandaID=6963076546
[2026-01-09 00:43:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 02:29:59]  *** The last 200 lines of the pilot log: ***
[2026-01-09 02:29:59] 2026-01-09 01:29:27,039 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 02:29:59] 2026-01-09 01:29:27,039 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 02:29:59] 2026-01-09 01:29:27,041 | INFO     | did not find any defunct processes belonging to 199513
[2026-01-09 02:29:59] 2026-01-09 01:29:27,042 | INFO     | did not find any defunct processes belonging to 199513
[2026-01-09 02:29:59] 2026-01-09 01:29:27,042 | INFO     | ready for new job
[2026-01-09 02:29:59] 2026-01-09 01:29:27,043 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 02:29:59] 2026-01-09 01:29:27,043 | INFO     | ***************************************
[2026-01-09 02:29:59] 2026-01-09 01:29:27,043 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 02:29:59] 2026-01-09 01:29:27,043 | INFO     | ***************************************
[2026-01-09 02:29:59] 2026-01-09 01:29:27,043 | INFO     | 
[2026-01-09 02:29:59] 2026-01-09 01:29:27,044 | INFO     | architecture information:
[2026-01-09 02:29:59] 2026-01-09 01:29:27,044 | INFO     | executing command: cat /etc/os-release
[2026-01-09 02:29:59] 2026-01-09 01:29:27,058 | INFO     | cat /etc/os-release:
[2026-01-09 02:29:59] NAME="CentOS Linux"
[2026-01-09 02:29:59] VERSION="7 (Core)"
[2026-01-09 02:29:59] ID="centos"
[2026-01-09 02:29:59] ID_LIKE="rhel fedora"
[2026-01-09 02:29:59] VERSION_ID="7"
[2026-01-09 02:29:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 02:29:59] ANSI_COLOR="0;31"
[2026-01-09 02:29:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 02:29:59] HOME_URL="https://www.centos.org/"
[2026-01-09 02:29:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 02:29:59] 
[2026-01-09 02:29:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 02:29:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 02:29:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 02:29:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 02:29:59] 
[2026-01-09 02:29:59] 2026-01-09 01:29:27,058 | INFO     | ***************************************
[2026-01-09 02:29:59] 2026-01-09 01:29:27,561 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 02:29:59] 2026-01-09 01:29:27,579 | INFO     | sufficient remaining disk space (239821914112 B)
[2026-01-09 02:29:59] 2026-01-09 01:29:27,579 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 02:29:59] 2026-01-09 01:29:27,579 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 02:29:59] 2026-01-09 01:29:27,579 | INFO     | update_server=False
[2026-01-09 02:29:59] 2026-01-09 01:29:27,579 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 02:29:59] 2026-01-09 01:29:27,579 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 02:29:59] 2026-01-09 01:29:27,579 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 02:29:59] 2026-01-09 01:29:27,710 | INFO     | all data control threads have been joined
[2026-01-09 02:29:59] 2026-01-09 01:29:27,725 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 02:29:59] 2026-01-09 01:29:27,725 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 02:29:59] 2026-01-09 01:29:27,725 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 02:29:59] 2026-01-09 01:29:27,725 | INFO     | will abort loop
[2026-01-09 02:29:59] 2026-01-09 01:29:28,011 | INFO     | all payload control threads have been joined
[2026-01-09 02:29:59] 2026-01-09 01:29:28,064 | INFO     | all job control threads have been joined
[2026-01-09 02:29:59] 2026-01-09 01:29:28,585 | INFO     | [job] queue monitor thread has finished
[2026-01-09 02:29:59] 2026-01-09 01:29:28,585 | INFO     | [job] retrieve thread has finished
[2026-01-09 02:29:59] 2026-01-09 01:29:28,644 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 02:29:59] 2026-01-09 01:29:28,709 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 02:29:59] 2026-01-09 01:29:28,715 | INFO     | [data] control thread has finished
[2026-01-09 02:29:59] 2026-01-09 01:29:28,730 | INFO     | [job] job monitor thread has finished
[2026-01-09 02:29:59] 2026-01-09 01:29:28,955 | INFO     | [payload] failed_post thread has finished
[2026-01-09 02:29:59] 2026-01-09 01:29:29,017 | INFO     | [payload] control thread has finished
[2026-01-09 02:29:59] 2026-01-09 01:29:29,070 | INFO     | [job] control thread has finished
[2026-01-09 02:29:59] 2026-01-09 01:29:29,219 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 02:29:59] 2026-01-09 01:29:29,238 | INFO     | [data] copytool_in thread has finished
[2026-01-09 02:29:59] 2026-01-09 01:29:29,585 | INFO     | [data] copytool_out thread has finished
[2026-01-09 02:29:59] 2026-01-09 01:29:29,961 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 02:29:59] 2026-01-09 01:29:29,963 | INFO     | [payload] validate_post thread has finished
[2026-01-09 02:29:59] 2026-01-09 01:29:29,984 | INFO     | [job] validate thread has finished
[2026-01-09 02:29:59] 2026-01-09 01:29:33,968 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 02:29:59] 2026-01-09 01:29:37,998 | INFO     | job.realtimelogging is not enabled
[2026-01-09 02:29:59] 2026-01-09 01:29:39,003 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 02:29:59] 2026-01-09 01:29:52,675 | INFO     | [monitor] cgroup control has ended
[2026-01-09 02:29:59] 2026-01-09 01:29:54,738 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140111509456704)>', '<ExcThread(monitor, started 140110272124672)>']
[2026-01-09 02:29:59] 2026-01-09 01:29:57,308 | INFO     | PID=192922 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 02:29:59] 2026-01-09 01:29:57,309 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 02:29:59] 2026-01-09 01:29:57,309 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 02:29:59] 2026-01-09 01:29:57,309 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 02:29:59] 2026-01-09 01:29:57,309 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 02:29:59] 2026-01-09 01:29:57,309 | INFO     | [monitor] control thread has ended
[2026-01-09 02:29:59] 2026-01-09 01:29:59,763 | INFO     | all workflow threads have been joined
[2026-01-09 02:29:59] 2026-01-09 01:29:59,763 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 02:29:59] 2026-01-09 01:29:59,763 | INFO     | traces error code: 0
[2026-01-09 02:29:59] 2026-01-09 01:29:59,764 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 02:29:59] 2026-01-09 01:29:59,842 [wrapper] ==== pilot stdout END ====
[2026-01-09 02:29:59] 2026-01-09 01:29:59,846 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 02:29:59] 2026-01-09 01:29:59,850 [wrapper] pilotpid: 192922
[2026-01-09 02:29:59] 2026-01-09 01:29:59,854 [wrapper] Pilot exit status: 0
[2026-01-09 02:29:59] 2026-01-09 01:29:59,866 [wrapper] pandaids: 6963076546
[2026-01-09 02:29:59] 2026-01-09 01:29:59,889 [wrapper] cleanup supervisor_pilot  214545 192923
[2026-01-09 02:29:59] 2026-01-09 01:29:59,892 [wrapper] Test setup, not cleaning
[2026-01-09 02:29:59] 2026-01-09 01:29:59,897 [wrapper] apfmon messages muted
[2026-01-09 02:29:59] 2026-01-09 01:29:59,900 [wrapper] ==== wrapper stdout END ====
[2026-01-09 02:29:59] 2026-01-09 01:29:59,904 [wrapper] ==== wrapper stderr END ====
[2026-01-09 02:29:59]  *** Error codes and diagnostics ***
[2026-01-09 02:29:59]     "exeErrorCode": 0,
[2026-01-09 02:29:59]     "exeErrorDiag": "",
[2026-01-09 02:29:59]     "pilotErrorCode": 0,
[2026-01-09 02:29:59]     "pilotErrorDiag": "",
[2026-01-09 02:29:59]  *** Listing of results directory ***
[2026-01-09 02:29:59] total 438576
[2026-01-09 02:29:59] -rw-r--r-- 1 boinc boinc    579449 Jan  8 12:06 pilot3.tar.gz
[2026-01-09 02:29:59] -rw-r--r-- 1 boinc boinc      5112 Jan  8 12:07 queuedata.json
[2026-01-09 02:29:59] -rwx------ 1 boinc boinc     36322 Jan  8 12:07 runpilot2-wrapper.sh
[2026-01-09 02:29:59] -rw-r--r-- 1 boinc boinc       100 Jan  9 00:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 02:29:59] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 00:43 run_atlas
[2026-01-09 02:29:59] -rw-r--r-- 1 boinc boinc       105 Jan  9 00:43 job.xml
[2026-01-09 02:29:59] -rw-r--r-- 2 boinc boinc 225390601 Jan  9 00:43 EVNT.47898824._000949.pool.root.1
[2026-01-09 02:29:59] drwxrwx--x 2 boinc boinc      4096 Jan  9 00:43 shared
[2026-01-09 02:29:59] -rw-r--r-- 2 boinc boinc    592398 Jan  9 00:43 input.tar.gz
[2026-01-09 02:29:59] -rw-r--r-- 2 boinc boinc     15847 Jan  9 00:43 start_atlas.sh
[2026-01-09 02:29:59] -rw-r--r-- 1 boinc boinc         0 Jan  9 00:43 boinc_setup_complete
[2026-01-09 02:29:59] -rw-r--r-- 1 boinc boinc      6377 Jan  9 00:43 init_data.xml
[2026-01-09 02:29:59] -rw-r--r-- 1 boinc boinc         0 Jan  9 00:43 boinc_lockfile
[2026-01-09 02:29:59] -rw-r--r-- 1 boinc boinc      2519 Jan  9 00:43 pandaJob.out
[2026-01-09 02:29:59] -rw------- 1 boinc boinc    989837 Jan  9 00:43 agis_schedconf.cvmfs.json
[2026-01-09 02:29:59] -rw------- 1 boinc boinc   1516240 Jan  9 00:43 agis_ddmendpoints.agis.ALL.json
[2026-01-09 02:29:59] drwx------ 5 boinc boinc      4096 Jan  9 00:43 pilot3
[2026-01-09 02:29:59] -rw------- 1 boinc boinc 217380454 Jan  9 02:28 HITS.47898826._023842.pool.root.1
[2026-01-09 02:29:59] -rw-r--r-- 1 boinc boinc       529 Jan  9 02:29 boinc_task_state.xml
[2026-01-09 02:29:59] -rw------- 1 boinc boinc      1024 Jan  9 02:29 memory_monitor_summary.json
[2026-01-09 02:29:59] -rw------- 1 boinc boinc        95 Jan  9 02:29 pilot_heartbeat.json
[2026-01-09 02:29:59] -rw------- 1 boinc boinc    295075 Jan  9 02:29 log.47898826._023842.job.log.tgz.1
[2026-01-09 02:29:59] -rw------- 1 boinc boinc      7769 Jan  9 02:29 heartbeat.json
[2026-01-09 02:29:59] -rw-r--r-- 1 boinc boinc      8192 Jan  9 02:29 boinc_mmap_file
[2026-01-09 02:29:59] -rw-r--r-- 1 boinc boinc        27 Jan  9 02:29 wrapper_checkpoint.txt
[2026-01-09 02:29:59] -rw------- 1 boinc boinc      5009 Jan  9 02:29 pilotlog.txt
[2026-01-09 02:29:59] -rw------- 1 boinc boinc    917695 Jan  9 02:29 log.47898826._023842.job.log.1
[2026-01-09 02:29:59] -rw------- 1 boinc boinc       357 Jan  9 02:29 output.list
[2026-01-09 02:29:59] -rw-r--r-- 1 boinc boinc       620 Jan  9 02:29 runtime_log
[2026-01-09 02:29:59] -rw------- 1 boinc boinc   1228800 Jan  9 02:29 result.tar.gz
[2026-01-09 02:29:59] -rw-r--r-- 1 boinc boinc      8902 Jan  9 02:29 runtime_log.err
[2026-01-09 02:29:59] -rw------- 1 boinc boinc       660 Jan  9 02:29 JazKDmP22x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmeDkKDm8Fw1Eo.diag
[2026-01-09 02:29:59] -rw-r--r-- 1 boinc boinc     10283 Jan  9 02:29 stderr.txt
[2026-01-09 02:29:59] HITS file was successfully produced:
[2026-01-09 02:29:59] -rw------- 1 boinc boinc 217380454 Jan  9 02:28 shared/HITS.pool.root.1
[2026-01-09 02:29:59]  *** Contents of shared directory: ***
[2026-01-09 02:29:59] total 434204
[2026-01-09 02:29:59] -rw-r--r-- 2 boinc boinc 225390601 Jan  9 00:43 ATLAS.root_0
[2026-01-09 02:29:59] -rw-r--r-- 2 boinc boinc    592398 Jan  9 00:43 input.tar.gz
[2026-01-09 02:29:59] -rw-r--r-- 2 boinc boinc     15847 Jan  9 00:43 start_atlas.sh
[2026-01-09 02:29:59] -rw------- 1 boinc boinc 217380454 Jan  9 02:28 HITS.pool.root.1
[2026-01-09 02:29:59] -rw------- 1 boinc boinc   1228800 Jan  9 02:29 result.tar.gz
02:30:01 (189131): run_atlas exited; CPU time 24164.952076
02:30:01 (189131): called boinc_finish(0)

</stderr_txt>
]]>

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