Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:46:24 (2606133): wrapper (7.7.26015): starting
09:46:24 (2606133): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 09:46:24] Arguments: --nthreads 12
[2026-01-08 09:46:24] Threads: 12
[2026-01-08 09:46:24] Checking for CVMFS
[2026-01-08 09:46:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 09:46:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 09:46:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 09:46:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 09:46:24] 2.11.3.0 1262301 55472 219132 154915 2 463 42658589 45568000 16616 130560 0 427966103 99.769 286086608 20211 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2026-01-08 09:46:24] CVMFS is ok
[2026-01-08 09:46:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 09:46:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 09:46:24] Further information can be found at the LHC@home message board.
[2026-01-08 09:46:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 09:46:24] Checking for apptainer binary...
[2026-01-08 09:46:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 09:46:24] Running /usr/bin/apptainer --version
[2026-01-08 09:46:24] apptainer version 1.4.1-1.el9
[2026-01-08 09:46:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 09:46:24] wns0169.triumf.lcg
[2026-01-08 09:46:24] apptainer works
[2026-01-08 09:46:24] Set ATHENA_PROC_NUMBER=12
[2026-01-08 09:46:24] Set ATHENA_CORE_NUMBER=12
[2026-01-08 09:46:24] Starting ATLAS job with PandaID=6962931487
[2026-01-08 09:46:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 09:51:02]  *** The last 200 lines of the pilot log: ***
[2026-01-08 09:51:02] 2026-01-08 17:50:29,536 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 09:51:02] 2026-01-08 17:50:29,536 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 09:51:02] 2026-01-08 17:50:29,537 | WARNING  | wrong length of table data, x=[1767894430.0, 1767894491.0], y=[1568.0, 717915.0] (must be same and length>=4)
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | could have reported an average CPU frequency of 2968 MHz (4 samples)
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | ..............................
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . Timing measurements:
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . get job = 0 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . initial setup = 3 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . payload setup = 9 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . stage-in = 0 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . payload execution = 76 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . stage-out = 0 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . log creation = 0 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | ..............................
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6962931487/pilotlog.txt
[2026-01-08 09:51:02] 2026-01-08 17:50:29,563 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-08 09:51:02] - Log from pilotlog.txt -
[2026-01-08 09:51:02] 2026-01-08 17:50:29,530 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6962931487/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 09:51:02] 2026-01-08 17:50:29,531 | INFO     | extracted standard info from prmon json
[2026-01-08 09:51:02] 2026-01-08 17:50:29,536 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 09:51:02] 2026-01-08 17:50:29,536 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 09:51:02] 2026-01-08 17:50:29,536 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 09:51:02] 2026-01-08 17:50:29,536 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 09:51:02] 2026-01-08 17:50:29,537 | WARNING  | wrong length of table data, x=[1767894430.0, 1767894491.0], y=[1568.0, 717915.0] (must be same and length>=4)
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | could have reported an average CPU frequency of 2968 MHz (4 samples)
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | ..............................
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . Timing measurements:
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . get job = 0 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . initial setup = 3 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . payload setup = 9 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . stage-in = 0 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . payload execution = 76 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . stage-out = 0 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . log creation = 0 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | ..............................
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6962931487/pilotlog.txt
[2026-01-08 09:51:02] 2026-01-08 17:50:29,563 | WARNING  | 
[2026-01-08 09:51:02] [begin log extracts]
[2026-01-08 09:51:02] - Log from pilotlog.txt -
[2026-01-08 09:51:02] 2026-01-08 17:50:29,530 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6962931487/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 09:51:02] 2026-01-08 17:50:29,531 | INFO     | extracted standard info from prmon json
[2026-01-08 09:51:02] 2026-01-08 17:50:29,536 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 09:51:02] 2026-01-08 17:50:29,536 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 09:51:02] 2026-01-08 17:50:29,536 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 09:51:02] 2026-01-08 17:50:29,536 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 09:51:02] 2026-01-08 17:50:29,537 | WARNING  | wrong length of table data, x=[1767894430.0, 1767894491.0], y=[1568.0, 717915.0] (must be same and length>=4)
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | could have reported an average CPU frequency of 2968 MHz (4 samples)
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | ..............................
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . Timing measurements:
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . get job = 0 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . initial setup = 3 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . payload setup = 9 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . stage-in = 0 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . payload execution = 76 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . stage-out = 0 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | . log creation = 0 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | ..............................
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-08 09:51:02] 2026-01-08 17:50:29,538 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6962931487/pilotlog.txt
[2026-01-08 09:51:02] [end log extracts]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,564 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2026-01-08 09:51:02] 2026-01-08 17:50:29,564 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-01-08 09:51:02] 2026-01-08 17:50:29,663 | INFO     | 
[2026-01-08 09:51:02] 2026-01-08 17:50:29,663 | INFO     | job summary report
[2026-01-08 09:51:02] 2026-01-08 17:50:29,663 | INFO     | --------------------------------------------------
[2026-01-08 09:51:02] 2026-01-08 17:50:29,663 | INFO     | PanDA job id: 6962931487
[2026-01-08 09:51:02] 2026-01-08 17:50:29,663 | INFO     | task id: 47961985
[2026-01-08 09:51:02] 2026-01-08 17:50:29,663 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-08 09:48:15,342 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-08 09:51:02] 2026-01-08 17:50:29,663 | INFO     | error 2/2: 1165: Local output file is missing
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | pilot state: failed 
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | transexitcode: 65
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | exeerrorcode: 65
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | exitcode: 65
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | cpuconsumptiontime: 35 s
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | nevents: 0
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | neventsw: 0
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | pid: 2620384
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | pgrp: 2620384
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | corecount: 12
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | event service: False
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | sizes: {0: 2284545, 6: 2284807, 11: 2284835, 89: 2310239, 91: 2314529, 94: 2314557, 216: 2314851}
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | --------------------------------------------------
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | 
[2026-01-08 09:51:02] 2026-01-08 17:50:29,664 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,745 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,746 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 09:51:02] 2026-01-08 17:50:29,746 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,746 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 09:51:02] 2026-01-08 17:50:29,746 | INFO     | job 6962931487 has completed (purged errors)
[2026-01-08 09:51:02] 2026-01-08 17:50:29,746 | INFO     | overall cleanup function is called
[2026-01-08 09:51:02] 2026-01-08 17:50:30,763 | INFO     | --- collectZombieJob: --- 10, [2620384]
[2026-01-08 09:51:02] 2026-01-08 17:50:30,763 | INFO     | zombie collector waiting for pid 2620384
[2026-01-08 09:51:02] 2026-01-08 17:50:30,763 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 09:51:02] 2026-01-08 17:50:30,763 | INFO     | collected zombie processes
[2026-01-08 09:51:02] 2026-01-08 17:50:30,764 | INFO     | will attempt to kill all subprocesses of pid=2620384
[2026-01-08 09:51:02] 2026-01-08 17:50:31,142 | INFO     | process IDs to be killed: [2620384] (in reverse order)
[2026-01-08 09:51:02] 2026-01-08 17:50:31,203 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 09:51:02] 2026-01-08 17:50:31,203 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 09:51:02] 2026-01-08 17:50:31,226 | INFO     | did not find any defunct processes belonging to 2620384
[2026-01-08 09:51:02] 2026-01-08 17:50:31,250 | INFO     | did not find any defunct processes belonging to 2620384
[2026-01-08 09:51:02] 2026-01-08 17:50:31,251 | INFO     | ready for new job
[2026-01-08 09:51:02] 2026-01-08 17:50:31,251 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 09:51:02] 2026-01-08 17:50:31,252 | INFO     | ***************************************
[2026-01-08 09:51:02] 2026-01-08 17:50:31,252 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 09:51:02] 2026-01-08 17:50:31,252 | INFO     | ***************************************
[2026-01-08 09:51:02] 2026-01-08 17:50:31,252 | INFO     | 
[2026-01-08 09:51:02] 2026-01-08 17:50:31,253 | INFO     | architecture information:
[2026-01-08 09:51:02] 2026-01-08 17:50:31,254 | INFO     | executing command: cat /etc/os-release
[2026-01-08 09:51:02] 2026-01-08 17:50:31,266 | INFO     | cat /etc/os-release:
[2026-01-08 09:51:02] NAME="CentOS Linux"
[2026-01-08 09:51:02] VERSION="7 (Core)"
[2026-01-08 09:51:02] ID="centos"
[2026-01-08 09:51:02] ID_LIKE="rhel fedora"
[2026-01-08 09:51:02] VERSION_ID="7"
[2026-01-08 09:51:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 09:51:02] ANSI_COLOR="0;31"
[2026-01-08 09:51:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 09:51:02] HOME_URL="https://www.centos.org/"
[2026-01-08 09:51:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 09:51:02] 
[2026-01-08 09:51:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 09:51:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 09:51:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 09:51:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 09:51:02] 
[2026-01-08 09:51:02] 2026-01-08 17:50:31,266 | INFO     | ***************************************
[2026-01-08 09:51:02] 2026-01-08 17:50:31,769 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-01-08 09:51:02] 2026-01-08 17:50:31,780 | INFO     | sufficient remaining disk space (2523615199232 B)
[2026-01-08 09:51:02] 2026-01-08 17:50:31,781 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 09:51:02] 2026-01-08 17:50:31,781 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 09:51:02] 2026-01-08 17:50:31,781 | INFO     | update_server=False
[2026-01-08 09:51:02] 2026-01-08 17:50:31,781 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 09:51:02] 2026-01-08 17:50:31,781 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 09:51:02] 2026-01-08 17:50:31,781 | INFO     | aborting loop
[2026-01-08 09:51:02] 2026-01-08 17:50:31,781 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 09:51:02] 2026-01-08 17:50:31,828 | INFO     | all data control threads have been joined
[2026-01-08 09:51:02] 2026-01-08 17:50:32,298 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 09:51:02] 2026-01-08 17:50:32,707 | INFO     | all payload control threads have been joined
[2026-01-08 09:51:02] 2026-01-08 17:50:32,786 | INFO     | [job] job monitor thread has finished
[2026-01-08 09:51:02] 2026-01-08 17:50:32,787 | INFO     | [job] retrieve thread has finished
[2026-01-08 09:51:02] 2026-01-08 17:50:32,834 | INFO     | [data] control thread has finished
[2026-01-08 09:51:02] 2026-01-08 17:50:32,912 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 09:51:02] 2026-01-08 17:50:32,985 | INFO     | [data] copytool_in thread has finished
[2026-01-08 09:51:02] 2026-01-08 17:50:32,997 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 09:51:02] 2026-01-08 17:50:33,153 | INFO     | [job] validate thread has finished
[2026-01-08 09:51:02] 2026-01-08 17:50:33,218 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 09:51:02] 2026-01-08 17:50:33,263 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 09:51:02] 2026-01-08 17:50:33,379 | INFO     | all job control threads have been joined
[2026-01-08 09:51:02] 2026-01-08 17:50:33,636 | INFO     | [payload] failed_post thread has finished
[2026-01-08 09:51:02] 2026-01-08 17:50:33,713 | INFO     | [payload] control thread has finished
[2026-01-08 09:51:02] 2026-01-08 17:50:33,884 | INFO     | [payload] validate_post thread has finished
[2026-01-08 09:51:02] 2026-01-08 17:50:34,305 | INFO     | [data] copytool_out thread has finished
[2026-01-08 09:51:02] 2026-01-08 17:50:34,384 | INFO     | [job] control thread has finished
[2026-01-08 09:51:02] 2026-01-08 17:50:34,677 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 09:51:02] 2026-01-08 17:50:35,683 | INFO     | [job] queue monitor thread has finished
[2026-01-08 09:51:02] 2026-01-08 17:50:35,789 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 09:51:02] 2026-01-08 17:50:37,045 | INFO     | [monitor] cgroup control has ended
[2026-01-08 09:51:02] 2026-01-08 17:50:37,365 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139749423843136)>', '<ExcThread(monitor, started 139748437915392)>']
[2026-01-08 09:51:02] 2026-01-08 17:50:42,390 | INFO     | all workflow threads have been joined
[2026-01-08 09:51:02] 2026-01-08 17:50:42,390 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 09:51:02] 2026-01-08 17:50:42,391 | INFO     | traces error code: 0
[2026-01-08 09:51:02] 2026-01-08 17:50:42,391 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 09:51:02] 2026-01-08 17:51:02,412 | INFO     | PID=2609809 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 09:51:02] 2026-01-08 17:51:02,412 | INFO     | .. there are 35 such processes running
[2026-01-08 09:51:02] 2026-01-08 17:51:02,414 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 09:51:02] 2026-01-08 17:51:02,414 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 09:51:02] 2026-01-08 17:51:02,414 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 09:51:02] 2026-01-08 17:51:02,414 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 09:51:02] 2026-01-08 17:51:02,414 | INFO     | [monitor] control thread has ended
[2026-01-08 09:51:02] 2026-01-08 17:51:02,566 [wrapper] ==== pilot stdout END ====
[2026-01-08 09:51:02] 2026-01-08 17:51:02,576 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 09:51:02] 2026-01-08 17:51:02,591 [wrapper] pilotpid: 2609809
[2026-01-08 09:51:02] 2026-01-08 17:51:02,597 [wrapper] Pilot exit status: 0
[2026-01-08 09:51:02] 2026-01-08 17:51:02,656 [wrapper] pandaids: 6962931487
[2026-01-08 09:51:02] 2026-01-08 17:51:02,693 [wrapper] cleanup supervisor_pilot 2609815 2609810
[2026-01-08 09:51:02] 2026-01-08 17:51:02,696 [wrapper] Test setup, not cleaning
[2026-01-08 09:51:02] 2026-01-08 17:51:02,697 [wrapper] apfmon messages muted
[2026-01-08 09:51:02] 2026-01-08 17:51:02,698 [wrapper] ==== wrapper stdout END ====
[2026-01-08 09:51:02] 2026-01-08 17:51:02,699 [wrapper] ==== wrapper stderr END ====
[2026-01-08 09:51:02]  *** Error codes and diagnostics ***
[2026-01-08 09:51:02]     "exeErrorCode": 65,
[2026-01-08 09:51:02]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2026-01-08 09:51:02]     "pilotErrorCode": 1305,
[2026-01-08 09:51:02]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2026-01-08 09:51:02]  *** Listing of results directory ***
[2026-01-08 09:51:02] total 407248
[2026-01-08 09:51:02] -rwx------. 1 boinc boinc     36322 Jan  8 00:21 runpilot2-wrapper.sh
[2026-01-08 09:51:02] -rw-r--r--. 1 boinc boinc    579449 Jan  8 00:23 pilot3.tar.gz
[2026-01-08 09:51:02] -rw-r--r--. 1 boinc boinc      5112 Jan  8 00:27 queuedata.json
[2026-01-08 09:51:02] -rw-r--r--. 1 boinc boinc       100 Jan  8 09:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 09:51:02] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 09:46 run_atlas
[2026-01-08 09:51:02] -rw-r--r--. 1 boinc boinc       105 Jan  8 09:46 job.xml
[2026-01-08 09:51:02] -rw-r--r--. 2 boinc boinc 412828867 Jan  8 09:46 EVNT.47961981._000024.pool.root.1
[2026-01-08 09:51:02] -rw-r--r--. 2 boinc boinc     15847 Jan  8 09:46 start_atlas.sh
[2026-01-08 09:51:02] drwxrwx--x. 2 boinc boinc      4096 Jan  8 09:46 shared
[2026-01-08 09:51:02] -rw-r--r--. 2 boinc boinc    592609 Jan  8 09:46 input.tar.gz
[2026-01-08 09:51:02] -rw-r--r--. 1 boinc boinc      6628 Jan  8 09:46 init_data.xml
[2026-01-08 09:51:02] -rw-r--r--. 1 boinc boinc         0 Jan  8 09:46 boinc_lockfile
[2026-01-08 09:51:02] -rw-r--r--. 1 boinc boinc      2875 Jan  8 09:46 pandaJob.out
[2026-01-08 09:51:02] -rw-------. 1 boinc boinc    989837 Jan  8 09:46 agis_schedconf.cvmfs.json
[2026-01-08 09:51:02] -rw-------. 1 boinc boinc   1516240 Jan  8 09:46 agis_ddmendpoints.agis.ALL.json
[2026-01-08 09:51:02] drwx------. 5 boinc boinc      4096 Jan  8 09:46 pilot3
[2026-01-08 09:51:02] -rw-r--r--. 1 boinc boinc       524 Jan  8 09:48 boinc_task_state.xml
[2026-01-08 09:51:02] -rw-------. 1 boinc boinc       992 Jan  8 09:48 memory_monitor_summary.json
[2026-01-08 09:51:02] -rw-------. 1 boinc boinc     47973 Jan  8 09:48 log.47961985._000619.job.log.tgz.1
[2026-01-08 09:51:02] -rw-------. 1 boinc boinc     10326 Jan  8 09:50 heartbeat.json
[2026-01-08 09:51:02] -rw-r--r--. 1 boinc boinc      8192 Jan  8 09:51 boinc_mmap_file
[2026-01-08 09:51:02] -rw-r--r--. 1 boinc boinc        23 Jan  8 09:51 wrapper_checkpoint.txt
[2026-01-08 09:51:02] -rw-------. 1 boinc boinc        95 Jan  8 09:51 pilot_heartbeat.json
[2026-01-08 09:51:02] -rw-------. 1 boinc boinc       823 Jan  8 09:51 pilotlog.txt
[2026-01-08 09:51:02] -rw-------. 1 boinc boinc     93798 Jan  8 09:51 log.47961985._000619.job.log.1
[2026-01-08 09:51:02] -rw-------. 1 boinc boinc       186 Jan  8 09:51 output.list
[2026-01-08 09:51:02] -rw-r--r--. 1 boinc boinc       620 Jan  8 09:51 runtime_log
[2026-01-08 09:51:02] -rw-------. 1 boinc boinc    163840 Jan  8 09:51 result.tar.gz
[2026-01-08 09:51:02] -rw-r--r--. 1 boinc boinc      8636 Jan  8 09:51 runtime_log.err
[2026-01-08 09:51:02] -rw-------. 1 boinc boinc       647 Jan  8 09:51 KgsLDmuR0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm07jKDmyVCSKn.diag
[2026-01-08 09:51:02] -rw-r--r--. 1 boinc boinc     22344 Jan  8 09:51 stderr.txt
[2026-01-08 09:51:02] No HITS result produced
[2026-01-08 09:51:02]  *** Contents of shared directory: ***
[2026-01-08 09:51:02] total 403916
[2026-01-08 09:51:02] -rw-r--r--. 2 boinc boinc 412828867 Jan  8 09:46 ATLAS.root_0
[2026-01-08 09:51:02] -rw-r--r--. 2 boinc boinc     15847 Jan  8 09:46 start_atlas.sh
[2026-01-08 09:51:02] -rw-r--r--. 2 boinc boinc    592609 Jan  8 09:46 input.tar.gz
[2026-01-08 09:51:02] -rw-------. 1 boinc boinc    163840 Jan  8 09:51 result.tar.gz
09:51:04 (2606133): run_atlas exited; CPU time 36.447046
09:51:04 (2606133): called boinc_finish(0)

</stderr_txt>
]]>

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