Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:06:28 (4182598): wrapper (7.7.26015): starting
03:06:28 (4182598): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 03:06:28] Arguments: --nthreads 3
[2026-01-09 03:06:28] Threads: 3
[2026-01-09 03:06:28] Checking for CVMFS
[2026-01-09 03:06:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 03:06:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 03:06:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 03:06:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 03:06:28] 2.9.2.0 3904259 1054 76204 154926 3 81 20475002 36864001 0 130560 0 669827 99.989 37124 20693 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 03:06:28] CVMFS is ok
[2026-01-09 03:06:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 03:06:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 03:06:28] Further information can be found at the LHC@home message board.
[2026-01-09 03:06:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 03:06:28] Checking for apptainer binary...
[2026-01-09 03:06:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 03:06:28] Running /usr/bin/apptainer --version
[2026-01-09 03:06:28] apptainer version 1.4.1-1.1
[2026-01-09 03:06:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 03:06:28] thA359
[2026-01-09 03:06:28] apptainer works
[2026-01-09 03:06:28] Set ATHENA_PROC_NUMBER=3
[2026-01-09 03:06:28] Set ATHENA_CORE_NUMBER=3
[2026-01-09 03:06:28] Starting ATLAS job with PandaID=6963074685
[2026-01-09 03:06:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 05:04:49]  *** The last 200 lines of the pilot log: ***
[2026-01-09 05:04:49] 2026-01-09 04:03:42,100 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 05:04:49] 2026-01-09 04:03:42,101 | INFO     | fitting pss+swap vs Time
[2026-01-09 05:04:49] 2026-01-09 04:03:42,101 | INFO     | sum of square deviations: 471562330.0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,101 | INFO     | sum of deviations: 9119795423.0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,101 | INFO     | mean x: 1767927891.0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,101 | INFO     | mean y: 2344922.9652173915
[2026-01-09 05:04:49] 2026-01-09 04:03:42,101 | INFO     | intersect: -34188555543.015266
[2026-01-09 05:04:49] 2026-01-09 04:03:42,101 | INFO     | chi2: 1.507079772679668
[2026-01-09 05:04:49] 2026-01-09 04:03:42,101 | INFO     | sum of square deviations: 412686807.5
[2026-01-09 05:04:49] 2026-01-09 04:03:42,102 | INFO     | sum of deviations: 8624255030.000004
[2026-01-09 05:04:49] 2026-01-09 04:03:42,102 | INFO     | mean x: 1767927738.5
[2026-01-09 05:04:49] 2026-01-09 04:03:42,102 | INFO     | mean y: 2343641.109090909
[2026-01-09 05:04:49] 2026-01-09 04:03:42,102 | INFO     | intersect: -36943493769.589226
[2026-01-09 05:04:49] 2026-01-09 04:03:42,102 | INFO     | chi2: 1.5099293731484011
[2026-01-09 05:04:49] 2026-01-09 04:03:42,102 | INFO     | current chi2=1.5099293731484011 (change=-0.18908093124137143 %)
[2026-01-09 05:04:49] 2026-01-09 04:03:42,102 | INFO     | right removable region: 109
[2026-01-09 05:04:49] 2026-01-09 04:03:42,102 | INFO     | sum of square deviations: 412686807.5
[2026-01-09 05:04:49] 2026-01-09 04:03:42,102 | INFO     | sum of deviations: -4340496052.999999
[2026-01-09 05:04:49] 2026-01-09 04:03:42,102 | INFO     | mean x: 1767928043.5
[2026-01-09 05:04:49] 2026-01-09 04:03:42,102 | INFO     | mean y: 2378803.381818182
[2026-01-09 05:04:49] 2026-01-09 04:03:42,102 | INFO     | intersect: 18596829983.650673
[2026-01-09 05:04:49] 2026-01-09 04:03:42,102 | INFO     | chi2: 0.08970168837926633
[2026-01-09 05:04:49] 2026-01-09 04:03:42,102 | INFO     | current chi2=0.08970168837926633 (change=94.04798007342559 %)
[2026-01-09 05:04:49] 2026-01-09 04:03:42,102 | INFO     | sum of square deviations: 358927660.0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,102 | INFO     | sum of deviations: 552148942.0000001
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | mean x: 1767928196.0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | mean y: 2364906.495238095
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | intersect: -2717290867.465924
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | chi2: 0.021338887705869992
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | current chi2=0.021338887705869992 (change=76.21127529322818 %)
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | sum of square deviations: 310052325.0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | sum of deviations: 1100315804.0000002
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | mean x: 1767928348.5
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | mean y: 2363313.1
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | intersect: -6271672858.678973
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | chi2: 0.001055316649398332
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | current chi2=0.001055316649398332 (change=95.05449082471141 %)
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | sum of square deviations: 265828240.0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | sum of deviations: 812140519.0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | mean x: 1767928501.0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | mean y: 2364307.0736842104
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | intersect: -5398891670.684856
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | chi2: 0.000972631717614055
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | current chi2=0.000972631717614055 (change=7.835082658026675 %)
[2026-01-09 05:04:49] 2026-01-09 04:03:42,103 | INFO     | left removable region: 40
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | sum of square deviations: 101843770.0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | sum of deviations: 107125577.0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | mean x: 1767928928.0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | mean y: 2366399.188405797
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | intersect: -1857250605.4353573
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | chi2: 0.000656824820872188
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | current memory leak: 1.05 B/s (using 69 data points, chi2=0.00)
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | could have reported an average CPU frequency of 3834 MHz (7 samples)
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | ..............................
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | . Timing measurements:
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | . get job = 0 s
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | . initial setup = 1 s
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | . payload setup = 2 s
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | . stage-in = 0 s
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | . payload execution = 6998 s
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | . stage-out = 0 s
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | . log creation = 0 s
[2026-01-09 05:04:49] 2026-01-09 04:03:42,104 | INFO     | ..............................
[2026-01-09 05:04:49] 2026-01-09 04:03:42,304 | INFO     | 
[2026-01-09 05:04:49] 2026-01-09 04:03:42,304 | INFO     | job summary report
[2026-01-09 05:04:49] 2026-01-09 04:03:42,304 | INFO     | --------------------------------------------------
[2026-01-09 05:04:49] 2026-01-09 04:03:42,304 | INFO     | PanDA job id: 6963074685
[2026-01-09 05:04:49] 2026-01-09 04:03:42,304 | INFO     | task id: 47898826
[2026-01-09 05:04:49] 2026-01-09 04:03:42,304 | INFO     | errors: (none)
[2026-01-09 05:04:49] 2026-01-09 04:03:42,304 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 05:04:49] 2026-01-09 04:03:42,304 | INFO     | pilot state: finished 
[2026-01-09 05:04:49] 2026-01-09 04:03:42,304 | INFO     | transexitcode: 0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,304 | INFO     | exeerrorcode: 0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,304 | INFO     | exeerrordiag: 
[2026-01-09 05:04:49] 2026-01-09 04:03:42,304 | INFO     | exitcode: 0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,304 | INFO     | exitmsg: OK
[2026-01-09 05:04:49] 2026-01-09 04:03:42,304 | INFO     | cpuconsumptiontime: 20306 s
[2026-01-09 05:04:49] 2026-01-09 04:03:42,305 | INFO     | nevents: 400
[2026-01-09 05:04:49] 2026-01-09 04:03:42,305 | INFO     | neventsw: 0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,305 | INFO     | pid: 4192761
[2026-01-09 05:04:49] 2026-01-09 04:03:42,305 | INFO     | pgrp: 4192761
[2026-01-09 05:04:49] 2026-01-09 04:03:42,305 | INFO     | corecount: 3
[2026-01-09 05:04:49] 2026-01-09 04:03:42,305 | INFO     | event service: False
[2026-01-09 05:04:49] 2026-01-09 04:03:42,305 | INFO     | sizes: {0: 2283966, 3: 2284228, 11: 2284256, 7005: 2311659, 7006: 2320663, 7009: 2320719, 7014: 2321041}
[2026-01-09 05:04:49] 2026-01-09 04:03:42,305 | INFO     | --------------------------------------------------
[2026-01-09 05:04:49] 2026-01-09 04:03:42,305 | INFO     | 
[2026-01-09 05:04:49] 2026-01-09 04:03:42,305 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,320 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 05:04:49] 2026-01-09 04:03:42,321 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,321 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 05:04:49] 2026-01-09 04:03:42,321 | INFO     | job 6963074685 has completed (purged errors)
[2026-01-09 05:04:49] 2026-01-09 04:03:42,321 | INFO     | overall cleanup function is called
[2026-01-09 05:04:49] 2026-01-09 04:03:43,327 | INFO     | --- collectZombieJob: --- 10, [4192761]
[2026-01-09 05:04:49] 2026-01-09 04:03:43,328 | INFO     | zombie collector waiting for pid 4192761
[2026-01-09 05:04:49] 2026-01-09 04:03:43,328 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 05:04:49] 2026-01-09 04:03:43,328 | INFO     | collected zombie processes
[2026-01-09 05:04:49] 2026-01-09 04:03:43,328 | INFO     | will attempt to kill all subprocesses of pid=4192761
[2026-01-09 05:04:49] 2026-01-09 04:03:43,374 | INFO     | process IDs to be killed: [4192761] (in reverse order)
[2026-01-09 05:04:49] 2026-01-09 04:03:43,399 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 05:04:49] 2026-01-09 04:03:43,399 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 05:04:49] 2026-01-09 04:03:43,400 | INFO     | did not find any defunct processes belonging to 4192761
[2026-01-09 05:04:49] 2026-01-09 04:03:43,401 | INFO     | did not find any defunct processes belonging to 4192761
[2026-01-09 05:04:49] 2026-01-09 04:03:43,401 | INFO     | ready for new job
[2026-01-09 05:04:49] 2026-01-09 04:03:43,401 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 05:04:49] 2026-01-09 04:03:43,402 | INFO     | ***************************************
[2026-01-09 05:04:49] 2026-01-09 04:03:43,402 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 05:04:49] 2026-01-09 04:03:43,402 | INFO     | ***************************************
[2026-01-09 05:04:49] 2026-01-09 04:03:43,402 | INFO     | 
[2026-01-09 05:04:49] 2026-01-09 04:03:43,402 | INFO     | architecture information:
[2026-01-09 05:04:49] 2026-01-09 04:03:43,403 | INFO     | executing command: cat /etc/os-release
[2026-01-09 05:04:49] 2026-01-09 04:03:43,411 | INFO     | cat /etc/os-release:
[2026-01-09 05:04:49] NAME="CentOS Linux"
[2026-01-09 05:04:49] VERSION="7 (Core)"
[2026-01-09 05:04:49] ID="centos"
[2026-01-09 05:04:49] ID_LIKE="rhel fedora"
[2026-01-09 05:04:49] VERSION_ID="7"
[2026-01-09 05:04:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 05:04:49] ANSI_COLOR="0;31"
[2026-01-09 05:04:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 05:04:49] HOME_URL="https://www.centos.org/"
[2026-01-09 05:04:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 05:04:49] 
[2026-01-09 05:04:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 05:04:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 05:04:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 05:04:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 05:04:49] 
[2026-01-09 05:04:49] 2026-01-09 04:03:43,411 | INFO     | ***************************************
[2026-01-09 05:04:49] 2026-01-09 04:03:43,914 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 05:04:49] 2026-01-09 04:03:43,927 | INFO     | sufficient remaining disk space (239393046528 B)
[2026-01-09 05:04:49] 2026-01-09 04:03:43,928 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 05:04:49] 2026-01-09 04:03:43,928 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 05:04:49] 2026-01-09 04:03:43,928 | INFO     | update_server=False
[2026-01-09 05:04:49] 2026-01-09 04:03:43,928 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 05:04:49] 2026-01-09 04:03:43,928 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:04:49] 2026-01-09 04:03:43,969 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 05:04:49] 2026-01-09 04:03:44,073 | INFO     | all job control threads have been joined
[2026-01-09 05:04:49] 2026-01-09 04:03:44,221 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 05:04:49] 2026-01-09 04:03:44,221 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 05:04:49] 2026-01-09 04:03:44,221 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:04:49] 2026-01-09 04:03:44,221 | INFO     | will abort loop
[2026-01-09 05:04:49] 2026-01-09 04:03:44,399 | INFO     | all data control threads have been joined
[2026-01-09 05:04:49] 2026-01-09 04:03:44,933 | INFO     | [job] queue monitor thread has finished
[2026-01-09 05:04:49] 2026-01-09 04:03:44,934 | INFO     | [job] retrieve thread has finished
[2026-01-09 05:04:49] 2026-01-09 04:03:44,944 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 05:04:49] 2026-01-09 04:03:45,079 | INFO     | [job] control thread has finished
[2026-01-09 05:04:49] 2026-01-09 04:03:45,227 | INFO     | [job] job monitor thread has finished
[2026-01-09 05:04:49] 2026-01-09 04:03:45,231 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 05:04:49] 2026-01-09 04:03:45,373 | INFO     | all payload control threads have been joined
[2026-01-09 05:04:49] 2026-01-09 04:03:45,405 | INFO     | [data] control thread has finished
[2026-01-09 05:04:49] 2026-01-09 04:03:45,835 | INFO     | [data] copytool_in thread has finished
[2026-01-09 05:04:49] 2026-01-09 04:03:45,975 | INFO     | [data] copytool_out thread has finished
[2026-01-09 05:04:49] 2026-01-09 04:03:46,062 | INFO     | [payload] validate_post thread has finished
[2026-01-09 05:04:49] 2026-01-09 04:03:46,250 | INFO     | [payload] failed_post thread has finished
[2026-01-09 05:04:49] 2026-01-09 04:03:46,255 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 05:04:49] 2026-01-09 04:03:46,256 | INFO     | [job] validate thread has finished
[2026-01-09 05:04:49] 2026-01-09 04:03:46,379 | INFO     | [payload] control thread has finished
[2026-01-09 05:04:49] 2026-01-09 04:03:47,189 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 05:04:49] 2026-01-09 04:03:51,196 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 05:04:49] 2026-01-09 04:03:54,191 | INFO     | job.realtimelogging is not enabled
[2026-01-09 05:04:49] 2026-01-09 04:03:55,197 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 05:04:49] 2026-01-09 04:04:14,005 | INFO     | PID=4186322 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 05:04:49] 2026-01-09 04:04:14,005 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 05:04:49] 2026-01-09 04:04:14,005 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 05:04:49] 2026-01-09 04:04:14,005 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 05:04:49] 2026-01-09 04:04:42,364 | INFO     | [monitor] cgroup control has ended
[2026-01-09 05:04:49] 2026-01-09 04:04:43,951 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140123896940352)>', '<ExcThread(monitor, started 140122955699968)>']
[2026-01-09 05:04:49] 2026-01-09 04:04:44,160 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 05:04:49] 2026-01-09 04:04:44,160 | INFO     | [monitor] control thread has ended
[2026-01-09 05:04:49] 2026-01-09 04:04:48,977 | INFO     | all workflow threads have been joined
[2026-01-09 05:04:49] 2026-01-09 04:04:48,977 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 05:04:49] 2026-01-09 04:04:48,977 | INFO     | traces error code: 0
[2026-01-09 05:04:49] 2026-01-09 04:04:48,978 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 05:04:49] 2026-01-09 04:04:49,029 [wrapper] ==== pilot stdout END ====
[2026-01-09 05:04:49] 2026-01-09 04:04:49,032 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 05:04:49] 2026-01-09 04:04:49,034 [wrapper] pilotpid: 4186322
[2026-01-09 05:04:49] 2026-01-09 04:04:49,036 [wrapper] Pilot exit status: 0
[2026-01-09 05:04:49] 2026-01-09 04:04:49,043 [wrapper] pandaids: 6963074685
[2026-01-09 05:04:49] 2026-01-09 04:04:49,060 [wrapper] cleanup supervisor_pilot   13583 4186323
[2026-01-09 05:04:49] 2026-01-09 04:04:49,063 [wrapper] Test setup, not cleaning
[2026-01-09 05:04:49] 2026-01-09 04:04:49,065 [wrapper] apfmon messages muted
[2026-01-09 05:04:49] 2026-01-09 04:04:49,067 [wrapper] ==== wrapper stdout END ====
[2026-01-09 05:04:49] 2026-01-09 04:04:49,070 [wrapper] ==== wrapper stderr END ====
[2026-01-09 05:04:49]  *** Error codes and diagnostics ***
[2026-01-09 05:04:49]     "exeErrorCode": 0,
[2026-01-09 05:04:49]     "exeErrorDiag": "",
[2026-01-09 05:04:49]     "pilotErrorCode": 0,
[2026-01-09 05:04:49]     "pilotErrorDiag": "",
[2026-01-09 05:04:49]  *** Listing of results directory ***
[2026-01-09 05:04:49] total 435980
[2026-01-09 05:04:49] -rw-r--r-- 1 boinc boinc    579449 Jan  8 12:06 pilot3.tar.gz
[2026-01-09 05:04:49] -rwx------ 1 boinc boinc     36322 Jan  8 12:06 runpilot2-wrapper.sh
[2026-01-09 05:04:49] -rw-r--r-- 1 boinc boinc      5112 Jan  8 12:07 queuedata.json
[2026-01-09 05:04:49] -rw-r--r-- 1 boinc boinc       100 Jan  9 03:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 05:04:49] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 03:06 run_atlas
[2026-01-09 05:04:49] -rw-r--r-- 1 boinc boinc       105 Jan  9 03:06 job.xml
[2026-01-09 05:04:49] -rw-r--r-- 2 boinc boinc 223113207 Jan  9 03:06 EVNT.47898824._000919.pool.root.1
[2026-01-09 05:04:49] -rw-r--r-- 2 boinc boinc    592395 Jan  9 03:06 input.tar.gz
[2026-01-09 05:04:49] -rw-r--r-- 2 boinc boinc     15847 Jan  9 03:06 start_atlas.sh
[2026-01-09 05:04:49] drwxrwx--x 2 boinc boinc      4096 Jan  9 03:06 shared
[2026-01-09 05:04:49] -rw-r--r-- 1 boinc boinc         0 Jan  9 03:06 boinc_setup_complete
[2026-01-09 05:04:49] -rw-r--r-- 1 boinc boinc      6438 Jan  9 03:06 init_data.xml
[2026-01-09 05:04:49] -rw-r--r-- 1 boinc boinc         0 Jan  9 03:06 boinc_lockfile
[2026-01-09 05:04:49] -rw-r--r-- 1 boinc boinc      2516 Jan  9 03:06 pandaJob.out
[2026-01-09 05:04:49] -rw------- 1 boinc boinc    989821 Jan  9 03:06 agis_schedconf.cvmfs.json
[2026-01-09 05:04:49] -rw------- 1 boinc boinc   1516240 Jan  9 03:06 agis_ddmendpoints.agis.ALL.json
[2026-01-09 05:04:49] drwx------ 5 boinc boinc      4096 Jan  9 03:06 pilot3
[2026-01-09 05:04:49] -rw------- 1 boinc boinc 216851966 Jan  9 05:03 HITS.47898826._023051.pool.root.1
[2026-01-09 05:04:49] -rw-r--r-- 1 boinc boinc       529 Jan  9 05:03 boinc_task_state.xml
[2026-01-09 05:04:49] -rw------- 1 boinc boinc      1020 Jan  9 05:03 memory_monitor_summary.json
[2026-01-09 05:04:49] -rw------- 1 boinc boinc    269500 Jan  9 05:03 log.47898826._023051.job.log.tgz.1
[2026-01-09 05:04:49] -rw------- 1 boinc boinc      7751 Jan  9 05:03 heartbeat.json
[2026-01-09 05:04:49] -rw------- 1 boinc boinc        95 Jan  9 05:04 pilot_heartbeat.json
[2026-01-09 05:04:49] -rw-r--r-- 1 boinc boinc      8192 Jan  9 05:04 boinc_mmap_file
[2026-01-09 05:04:49] -rw-r--r-- 1 boinc boinc        27 Jan  9 05:04 wrapper_checkpoint.txt
[2026-01-09 05:04:49] -rw------- 1 boinc boinc      5010 Jan  9 05:04 pilotlog.txt
[2026-01-09 05:04:49] -rw------- 1 boinc boinc   1012286 Jan  9 05:04 log.47898826._023051.job.log.1
[2026-01-09 05:04:49] -rw------- 1 boinc boinc       357 Jan  9 05:04 output.list
[2026-01-09 05:04:49] -rw-r--r-- 1 boinc boinc       620 Jan  9 05:04 runtime_log
[2026-01-09 05:04:49] -rw------- 1 boinc boinc   1300480 Jan  9 05:04 result.tar.gz
[2026-01-09 05:04:49] -rw-r--r-- 1 boinc boinc      8897 Jan  9 05:04 runtime_log.err
[2026-01-09 05:04:49] -rw------- 1 boinc boinc       659 Jan  9 05:04 a6dLDm112x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAxeKDmxxUmtm.diag
[2026-01-09 05:04:49] -rw-r--r-- 1 boinc boinc     20891 Jan  9 05:04 stderr.txt
[2026-01-09 05:04:49] HITS file was successfully produced:
[2026-01-09 05:04:49] -rw------- 1 boinc boinc 216851966 Jan  9 05:03 shared/HITS.pool.root.1
[2026-01-09 05:04:49]  *** Contents of shared directory: ***
[2026-01-09 05:04:49] total 431532
[2026-01-09 05:04:49] -rw-r--r-- 2 boinc boinc 223113207 Jan  9 03:06 ATLAS.root_0
[2026-01-09 05:04:49] -rw-r--r-- 2 boinc boinc    592395 Jan  9 03:06 input.tar.gz
[2026-01-09 05:04:49] -rw-r--r-- 2 boinc boinc     15847 Jan  9 03:06 start_atlas.sh
[2026-01-09 05:04:49] -rw------- 1 boinc boinc 216851966 Jan  9 05:03 HITS.pool.root.1
[2026-01-09 05:04:49] -rw------- 1 boinc boinc   1300480 Jan  9 05:04 result.tar.gz
05:04:50 (4182598): run_atlas exited; CPU time 20338.453303
05:04:50 (4182598): called boinc_finish(0)

</stderr_txt>
]]>

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