Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:26:28 (19234): wrapper (7.7.26015): starting
20:26:28 (19234): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 20:26:28] Arguments: --nthreads 8
[2026-01-08 20:26:28] Threads: 8
[2026-01-08 20:26:28] Checking for CVMFS
[2026-01-08 20:26:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 20:26:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 20:26:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 20:26:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 20:26:28] 2.11.0.0 4265 127830 86496 154918 3 1 3416016 4096000 0 130560 2 6290792 99.337 7481289 490 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-08 20:26:28] CVMFS is ok
[2026-01-08 20:26:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 20:26:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 20:26:28] Further information can be found at the LHC@home message board.
[2026-01-08 20:26:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 20:26:28] Checking for apptainer binary...
[2026-01-08 20:26:28] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-08 20:26:28] apptainer is not installed, using version from CVMFS
[2026-01-08 20:26:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 20:26:28] WARNING: Environment variable TMPDIR already has value [/tmp/job_11006540/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node278
[2026-01-08 20:26:28] apptainer works
[2026-01-08 20:26:28] Set ATHENA_PROC_NUMBER=8
[2026-01-08 20:26:28] Set ATHENA_CORE_NUMBER=8
[2026-01-08 20:26:28] Starting ATLAS job with PandaID=6962917935
[2026-01-08 20:26:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11006540/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 21:31:47]  *** The last 200 lines of the pilot log: ***
[2026-01-08 21:31:47]  lfn=log.47898826._020015.job.log.tgz.1
[2026-01-08 21:31:47]  mtime=0
[2026-01-08 21:31:47]  protocol_id=None
[2026-01-08 21:31:47]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-08 21:31:47]  replicas=None
[2026-01-08 21:31:47]  scope=mc23_13p6TeV
[2026-01-08 21:31:47]  status=None
[2026-01-08 21:31:47]  status_code=0
[2026-01-08 21:31:47]  storage_token=
[2026-01-08 21:31:47]  surl=/tmp/job_11006540/atlas/pilot/slots/0/PanDA_Pilot-6962917935/log.47898826._020015.job.log.tgz.1
[2026-01-08 21:31:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/20/log.47898826._020015.job.log.tgz.1
[2026-01-08 21:31:47]  workdir=None
[2026-01-08 21:31:47] ]
[2026-01-08 21:31:47] 2026-01-08 20:30:45,563 | INFO     | transferring file log.47898826._020015.job.log.tgz.1 from /tmp/job_11006540/atlas/pilot/slots/0/PanDA_Pilot-6962917935/log.47898826._020015.job.log.tgz.1 to /tmp/j
[2026-01-08 21:31:47] 2026-01-08 20:30:45,563 | INFO     | executing command: /usr/bin/env mv /tmp/job_11006540/atlas/pilot/slots/0/PanDA_Pilot-6962917935/log.47898826._020015.job.log.tgz.1 /tmp/job_11006540/atlas/pilot/sl
[2026-01-08 21:31:47] 2026-01-08 20:30:45,570 | INFO     | adding to output.list: log.47898826._020015.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/20/log.47898826._020015.job.log.tg
[2026-01-08 21:31:47] 2026-01-08 20:30:45,571 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-08 21:31:47] 2026-01-08 20:30:45,571 | INFO     | summary of transferred files:
[2026-01-08 21:31:47] 2026-01-08 20:30:45,571 | INFO     |  -- lfn=log.47898826._020015.job.log.tgz.1, status_code=0, status=transferred
[2026-01-08 21:31:47] 2026-01-08 20:30:45,571 | INFO     | stage-out finished correctly
[2026-01-08 21:31:47] 2026-01-08 20:30:46,818 | INFO     | time since job start (3851s) is within the limit (174528.0s)
[2026-01-08 21:31:47] 2026-01-08 20:30:47,803 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-08 21:31:47] 2026-01-08 20:30:47,849 | INFO     | job 6962917935 has state=finished
[2026-01-08 21:31:47] 2026-01-08 20:30:47,849 | INFO     | preparing for final server update for job 6962917935 in state='finished'
[2026-01-08 21:31:47] 2026-01-08 20:30:47,849 | INFO     | this job has now completed (state=finished)
[2026-01-08 21:31:47] 2026-01-08 20:30:47,849 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-08 21:31:47] 2026-01-08 20:30:47,849 | INFO     | log transfer has been attempted: DONE
[2026-01-08 21:31:47] 2026-01-08 20:30:47,849 | INFO     | job 6962917935 has finished - writing final server update
[2026-01-08 21:31:47] 2026-01-08 20:30:47,849 | INFO     | total number of processed events: 400 (read)
[2026-01-08 21:31:47] 2026-01-08 20:30:47,850 | INFO     | executing command: lscpu
[2026-01-08 21:31:47] 2026-01-08 20:30:47,881 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-08 21:31:47] 2026-01-08 20:30:48,829 | INFO     | time since job start (3853s) is within the limit (174528.0s)
[2026-01-08 21:31:47] 2026-01-08 20:30:49,342 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 21:31:47] 2026-01-08 20:30:49,346 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2490.3176562500003
[2026-01-08 21:31:47] 2026-01-08 20:30:49,351 | INFO     | using path: /tmp/job_11006540/atlas/pilot/slots/0/PanDA_Pilot-6962917935/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 21:31:47] 2026-01-08 20:30:49,351 | INFO     | extracted standard info from prmon json
[2026-01-08 21:31:47] 2026-01-08 20:30:49,351 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 21:31:47] 2026-01-08 20:30:49,351 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 21:31:47] 2026-01-08 20:30:49,352 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 21:31:47] 2026-01-08 20:30:49,352 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 21:31:47] 2026-01-08 20:30:49,352 | INFO     | fitting pss+swap vs Time
[2026-01-08 21:31:47] 2026-01-08 20:30:49,353 | INFO     | sum of square deviations: 54438230.0
[2026-01-08 21:31:47] 2026-01-08 20:30:49,353 | INFO     | sum of deviations: -5059000352.0
[2026-01-08 21:31:47] 2026-01-08 20:30:49,353 | INFO     | mean x: 1767902396.5
[2026-01-08 21:31:47] 2026-01-08 20:30:49,353 | INFO     | mean y: 2719177.9285714286
[2026-01-08 21:31:47] 2026-01-08 20:30:49,353 | INFO     | intersect: 164295695753.30847
[2026-01-08 21:31:47] 2026-01-08 20:30:49,353 | INFO     | chi2: 0.03506746488043738
[2026-01-08 21:31:47] 2026-01-08 20:30:49,353 | INFO     | current memory leak: -92.93 B/s (using 56 data points, chi2=0.04)
[2026-01-08 21:31:47] 2026-01-08 20:30:49,353 | INFO     | could have reported an average CPU frequency of 2476 MHz (6 samples)
[2026-01-08 21:31:47] 2026-01-08 20:30:49,353 | INFO     | ..............................
[2026-01-08 21:31:47] 2026-01-08 20:30:49,353 | INFO     | . Timing measurements:
[2026-01-08 21:31:47] 2026-01-08 20:30:49,353 | INFO     | . get job = 0 s
[2026-01-08 21:31:47] 2026-01-08 20:30:49,353 | INFO     | . initial setup = 1 s
[2026-01-08 21:31:47] 2026-01-08 20:30:49,353 | INFO     | . payload setup = 2 s
[2026-01-08 21:31:47] 2026-01-08 20:30:49,353 | INFO     | . stage-in = 0 s
[2026-01-08 21:31:47] 2026-01-08 20:30:49,353 | INFO     | . payload execution = 3829 s
[2026-01-08 21:31:47] 2026-01-08 20:30:49,353 | INFO     | . stage-out = 0 s
[2026-01-08 21:31:47] 2026-01-08 20:30:49,354 | INFO     | . log creation = 0 s
[2026-01-08 21:31:47] 2026-01-08 20:30:49,354 | INFO     | ..............................
[2026-01-08 21:31:47] 2026-01-08 20:30:49,402 | INFO     | 
[2026-01-08 21:31:47] 2026-01-08 20:30:49,402 | INFO     | job summary report
[2026-01-08 21:31:47] 2026-01-08 20:30:49,402 | INFO     | --------------------------------------------------
[2026-01-08 21:31:47] 2026-01-08 20:30:49,402 | INFO     | PanDA job id: 6962917935
[2026-01-08 21:31:47] 2026-01-08 20:30:49,402 | INFO     | task id: 47898826
[2026-01-08 21:31:47] 2026-01-08 20:30:49,402 | INFO     | errors: (none)
[2026-01-08 21:31:47] 2026-01-08 20:30:49,402 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 21:31:47] 2026-01-08 20:30:49,402 | INFO     | pilot state: finished 
[2026-01-08 21:31:47] 2026-01-08 20:30:49,402 | INFO     | transexitcode: 0
[2026-01-08 21:31:47] 2026-01-08 20:30:49,402 | INFO     | exeerrorcode: 0
[2026-01-08 21:31:47] 2026-01-08 20:30:49,402 | INFO     | exeerrordiag: 
[2026-01-08 21:31:47] 2026-01-08 20:30:49,402 | INFO     | exitcode: 0
[2026-01-08 21:31:47] 2026-01-08 20:30:49,402 | INFO     | exitmsg: OK
[2026-01-08 21:31:47] 2026-01-08 20:30:49,403 | INFO     | cpuconsumptiontime: 27731 s
[2026-01-08 21:31:47] 2026-01-08 20:30:49,403 | INFO     | nevents: 400
[2026-01-08 21:31:47] 2026-01-08 20:30:49,403 | INFO     | neventsw: 0
[2026-01-08 21:31:47] 2026-01-08 20:30:49,403 | INFO     | pid: 29550
[2026-01-08 21:31:47] 2026-01-08 20:30:49,403 | INFO     | pgrp: 29550
[2026-01-08 21:31:47] 2026-01-08 20:30:49,403 | INFO     | corecount: 8
[2026-01-08 21:31:47] 2026-01-08 20:30:49,403 | INFO     | event service: False
[2026-01-08 21:31:47] 2026-01-08 20:30:49,403 | INFO     | sizes: {0: 2283757, 1: 2284123, 3: 2284385, 11: 2284413, 3835: 2310389, 3836: 2310388, 3837: 2319600, 3839: 2319656, 3841: 2319850}
[2026-01-08 21:31:47] 2026-01-08 20:30:49,403 | INFO     | --------------------------------------------------
[2026-01-08 21:31:47] 2026-01-08 20:30:49,403 | INFO     | 
[2026-01-08 21:31:47] 2026-01-08 20:30:49,403 | INFO     | executing command: ls -lF /tmp/job_11006540/atlas/pilot/slots/0
[2026-01-08 21:31:47] 2026-01-08 20:30:49,411 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,411 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,411 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,411 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,411 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,411 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,411 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,411 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,411 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,411 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,411 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,412 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,412 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,412 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,412 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,412 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,412 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,412 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 21:31:47] 2026-01-08 20:30:49,412 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,412 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 21:31:47] 2026-01-08 20:30:49,412 | INFO     | job 6962917935 has completed (purged errors)
[2026-01-08 21:31:47] 2026-01-08 20:30:49,412 | INFO     | overall cleanup function is called
[2026-01-08 21:31:47] 2026-01-08 20:30:50,388 | WARNING  | process 29550 can no longer be monitored (due to stat problems) - aborting
[2026-01-08 21:31:47] 2026-01-08 20:30:50,418 | INFO     | --- collectZombieJob: --- 10, [29550]
[2026-01-08 21:31:47] 2026-01-08 20:30:50,418 | INFO     | zombie collector waiting for pid 29550
[2026-01-08 21:31:47] 2026-01-08 20:30:50,418 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 21:31:47] 2026-01-08 20:30:50,418 | INFO     | collected zombie processes
[2026-01-08 21:31:47] 2026-01-08 20:30:50,418 | INFO     | will attempt to kill all subprocesses of pid=29550
[2026-01-08 21:31:47] 2026-01-08 20:30:50,502 | INFO     | using path: /tmp/job_11006540/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 21:31:47] 2026-01-08 20:30:50,586 | INFO     | process IDs to be killed: [29550] (in reverse order)
[2026-01-08 21:31:47] 2026-01-08 20:30:50,619 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 21:31:47] 2026-01-08 20:30:50,619 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 21:31:47] 2026-01-08 20:30:50,628 | INFO     | did not find any defunct processes belonging to 29550
[2026-01-08 21:31:47] 2026-01-08 20:30:50,635 | INFO     | did not find any defunct processes belonging to 29550
[2026-01-08 21:31:47] 2026-01-08 20:30:50,635 | INFO     | ready for new job
[2026-01-08 21:31:47] 2026-01-08 20:30:50,635 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 21:31:47] 2026-01-08 20:30:50,635 | INFO     | ***************************************
[2026-01-08 21:31:47] 2026-01-08 20:30:50,635 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 21:31:47] 2026-01-08 20:30:50,635 | INFO     | ***************************************
[2026-01-08 21:31:47] 2026-01-08 20:30:50,636 | INFO     | 
[2026-01-08 21:31:47] 2026-01-08 20:30:50,639 | INFO     | number of running child processes to parent process 29550: 1
[2026-01-08 21:31:47] 2026-01-08 20:30:50,639 | INFO     | maximum number of monitored processes: 6
[2026-01-08 21:31:47] 2026-01-08 20:30:50,639 | INFO     | aborting job monitoring since job object (job id=6962917935) has expired
[2026-01-08 21:31:47] 2026-01-08 20:30:50,649 | INFO     | architecture information:
[2026-01-08 21:31:47] 2026-01-08 20:30:50,649 | INFO     | executing command: cat /etc/os-release
[2026-01-08 21:31:47] 2026-01-08 20:30:50,654 | INFO     | cat /etc/os-release:
[2026-01-08 21:31:47] NAME="CentOS Linux"
[2026-01-08 21:31:47] VERSION="7 (Core)"
[2026-01-08 21:31:47] ID="centos"
[2026-01-08 21:31:47] ID_LIKE="rhel fedora"
[2026-01-08 21:31:47] VERSION_ID="7"
[2026-01-08 21:31:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 21:31:47] ANSI_COLOR="0;31"
[2026-01-08 21:31:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 21:31:47] HOME_URL="https://www.centos.org/"
[2026-01-08 21:31:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 21:31:47] 
[2026-01-08 21:31:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 21:31:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 21:31:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 21:31:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 21:31:47] 
[2026-01-08 21:31:47] 2026-01-08 20:30:50,654 | INFO     | ***************************************
[2026-01-08 21:31:47] 2026-01-08 20:30:51,154 | INFO     | executing command: df -mP /tmp/job_11006540/atlas/pilot/slots/0
[2026-01-08 21:31:47] 2026-01-08 20:30:51,159 | INFO     | sufficient remaining disk space (226038382592 B)
[2026-01-08 21:31:47] 2026-01-08 20:30:51,159 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 21:31:47] 2026-01-08 20:30:51,159 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 21:31:47] 2026-01-08 20:30:51,159 | INFO     | update_server=False
[2026-01-08 21:31:47] 2026-01-08 20:30:51,159 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 21:31:47] 2026-01-08 20:30:51,159 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 21:31:47] 2026-01-08 20:30:51,159 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 21:31:47] 2026-01-08 20:30:51,159 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 21:31:47] 2026-01-08 20:30:51,159 | INFO     | will abort loop
[2026-01-08 21:31:47] 2026-01-08 20:30:51,958 | INFO     | all data control threads have been joined
[2026-01-08 21:31:47] 2026-01-08 20:30:52,164 | INFO     | [job] retrieve thread has finished
[2026-01-08 21:31:47] 2026-01-08 20:30:52,164 | INFO     | [job] queue monitor thread has finished
[2026-01-08 21:31:47] 2026-01-08 20:30:52,164 | INFO     | [job] job monitor thread has finished
[2026-01-08 21:31:47] 2026-01-08 20:30:52,196 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 21:31:47] 2026-01-08 20:30:52,308 | INFO     | all payload control threads have been joined
[2026-01-08 21:31:47] 2026-01-08 20:30:52,347 | INFO     | [job] validate thread has finished
[2026-01-08 21:31:47] 2026-01-08 20:30:52,560 | INFO     | all job control threads have been joined
[2026-01-08 21:31:47] 2026-01-08 20:30:52,852 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 21:31:47] 2026-01-08 20:30:52,963 | INFO     | [data] control thread has finished
[2026-01-08 21:31:47] 2026-01-08 20:30:53,021 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 21:31:47] 2026-01-08 20:30:53,154 | INFO     | [payload] validate_post thread has finished
[2026-01-08 21:31:47] 2026-01-08 20:30:53,164 | INFO     | [data] copytool_out thread has finished
[2026-01-08 21:31:47] 2026-01-08 20:30:53,181 | INFO     | [payload] failed_post thread has finished
[2026-01-08 21:31:47] 2026-01-08 20:30:53,228 | INFO     | [data] copytool_in thread has finished
[2026-01-08 21:31:47] 2026-01-08 20:30:53,313 | INFO     | [payload] control thread has finished
[2026-01-08 21:31:47] 2026-01-08 20:30:53,565 | INFO     | [job] control thread has finished
[2026-01-08 21:31:47] 2026-01-08 20:30:53,853 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 21:31:47] 2026-01-08 20:30:57,858 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 21:31:47] 2026-01-08 20:31:01,297 | INFO     | job.realtimelogging is not enabled
[2026-01-08 21:31:47] 2026-01-08 20:31:02,302 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 21:31:47] 2026-01-08 20:31:22,006 | INFO     | PID=22973 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 21:31:47] 2026-01-08 20:31:22,006 | INFO     | .. there are 2 such processes running
[2026-01-08 21:31:47] 2026-01-08 20:31:22,006 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 21:31:47] 2026-01-08 20:31:22,006 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 21:31:47] 2026-01-08 20:31:22,006 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 21:31:47] 2026-01-08 20:31:41,593 | INFO     | [monitor] cgroup control has ended
[2026-01-08 21:31:47] 2026-01-08 20:31:42,320 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2026-01-08 21:31:47] 2026-01-08 20:31:43,109 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 21:31:47] 2026-01-08 20:31:43,109 | INFO     | [monitor] control thread has ended
[2026-01-08 21:31:47] 2026-01-08 20:31:47,344 | INFO     | all workflow threads have been joined
[2026-01-08 21:31:47] 2026-01-08 20:31:47,345 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 21:31:47] 2026-01-08 20:31:47,345 | INFO     | traces error code: 0
[2026-01-08 21:31:47] 2026-01-08 20:31:47,345 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 21:31:47] 2026-01-08 20:31:47,397 [wrapper] ==== pilot stdout END ====
[2026-01-08 21:31:47] 2026-01-08 20:31:47,399 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 21:31:47] 2026-01-08 20:31:47,400 [wrapper] pilotpid: 22973
[2026-01-08 21:31:47] 2026-01-08 20:31:47,400 [wrapper] Pilot exit status: 0
[2026-01-08 21:31:47] 2026-01-08 20:31:47,405 [wrapper] pandaids: 6962917935
[2026-01-08 21:31:47] 2026-01-08 20:31:47,427 [wrapper] cleanup supervisor_pilot  6487 22974
[2026-01-08 21:31:47] 2026-01-08 20:31:47,428 [wrapper] Test setup, not cleaning
[2026-01-08 21:31:47] 2026-01-08 20:31:47,429 [wrapper] apfmon messages muted
[2026-01-08 21:31:47] 2026-01-08 20:31:47,430 [wrapper] ==== wrapper stdout END ====
[2026-01-08 21:31:47] 2026-01-08 20:31:47,431 [wrapper] ==== wrapper stderr END ====
[2026-01-08 21:31:47]  *** Error codes and diagnostics ***
[2026-01-08 21:31:47]     "exeErrorCode": 0,
[2026-01-08 21:31:47]     "exeErrorDiag": "",
[2026-01-08 21:31:47]     "pilotErrorCode": 0,
[2026-01-08 21:31:47]     "pilotErrorDiag": "",
[2026-01-08 21:31:47]  *** Listing of results directory ***
[2026-01-08 21:31:47] total 441612
[2026-01-08 21:31:47] -rwx------ 1 mf493845 unix-user     36322 Jan  8 09:06 runpilot2-wrapper.sh
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user      5112 Jan  8 09:11 queuedata.json
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user    579449 Jan  8 09:11 pilot3.tar.gz
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user       100 Jan  8 19:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 21:31:47] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan  8 19:28 run_atlas
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user       105 Jan  8 19:28 job.xml
[2026-01-08 21:31:47] -rw-r--r-- 2 mf493845 unix-user 227324680 Jan  8 20:26 EVNT.47898824._000663.pool.root.1
[2026-01-08 21:31:47] -rw-r--r-- 2 mf493845 unix-user     15847 Jan  8 20:26 start_atlas.sh
[2026-01-08 21:31:47] drwxrwx--x 2 mf493845 unix-user       100 Jan  8 20:26 shared
[2026-01-08 21:31:47] -rw-r--r-- 2 mf493845 unix-user    592399 Jan  8 20:26 input.tar.gz
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user      6390 Jan  8 20:26 init_data.xml
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user         0 Jan  8 20:26 boinc_setup_complete
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user      8192 Jan  8 20:26 boinc_mmap_file
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user         0 Jan  8 20:26 boinc_lockfile
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user      2519 Jan  8 20:26 pandaJob.out
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user    989845 Jan  8 20:26 agis_schedconf.cvmfs.json
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user   1516240 Jan  8 20:26 agis_ddmendpoints.agis.ALL.json
[2026-01-08 21:31:47] drwx------ 5 mf493845 unix-user       440 Jan  8 20:26 pilot3
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user 219191627 Jan  8 21:30 HITS.47898826._020015.pool.root.1
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user        95 Jan  8 21:30 pilot_heartbeat.json
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user      1016 Jan  8 21:30 memory_monitor_summary.json
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user    316962 Jan  8 21:30 log.47898826._020015.job.log.tgz.1
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user      7772 Jan  8 21:30 heartbeat.json
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user      5195 Jan  8 21:31 pilotlog.txt
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user    588870 Jan  8 21:31 log.47898826._020015.job.log.1
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user       357 Jan  8 21:31 output.list
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user       620 Jan  8 21:31 runtime_log
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user    921600 Jan  8 21:31 result.tar.gz
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user      9220 Jan  8 21:31 runtime_log.err
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user       644 Jan  8 21:31 aBaNDmND0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmleeKDmskOAjm.diag
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user     22169 Jan  8 21:31 stderr.txt
[2026-01-08 21:31:47] HITS file was successfully produced:
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user 219191627 Jan  8 21:30 shared/HITS.pool.root.1
[2026-01-08 21:31:47]  *** Contents of shared directory: ***
[2026-01-08 21:31:47] total 437552
[2026-01-08 21:31:47] -rw-r--r-- 2 mf493845 unix-user 227324680 Jan  8 20:26 ATLAS.root_0
[2026-01-08 21:31:47] -rw-r--r-- 2 mf493845 unix-user     15847 Jan  8 20:26 start_atlas.sh
[2026-01-08 21:31:47] -rw-r--r-- 2 mf493845 unix-user    592399 Jan  8 20:26 input.tar.gz
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user 219191627 Jan  8 21:30 HITS.pool.root.1
[2026-01-08 21:31:47] -rw------- 1 mf493845 unix-user    921600 Jan  8 21:31 result.tar.gz
21:31:48 (19234): run_atlas exited; CPU time 27778.226667
21:31:48 (19234): called boinc_finish(0)

</stderr_txt>
]]>

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