Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:35:35 (23231): wrapper (7.7.26015): starting
12:35:35 (23231): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 12:35:35] Arguments: --nthreads 8
[2026-01-08 12:35:35] Threads: 8
[2026-01-08 12:35:35] Checking for CVMFS
[2026-01-08 12:35:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 12:35:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 12:35:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 12:35:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 12:35:35] 2.11.2.0 2830 135525 82096 154915 0 58 12082243 20275201 1 130560 0 36867847 99.891 7474468 32847 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 12:35:35] CVMFS is ok
[2026-01-08 12:35:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 12:35:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 12:35:35] Further information can be found at the LHC@home message board.
[2026-01-08 12:35:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 12:35:35] Checking for apptainer binary...
[2026-01-08 12:35:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 12:35:35] Running /usr/bin/apptainer --version
[2026-01-08 12:35:35] apptainer version 1.3.2-1.el7
[2026-01-08 12:35:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 12:35:37] c-204-20.aglt2.org
[2026-01-08 12:35:37] apptainer works
[2026-01-08 12:35:37] Set ATHENA_PROC_NUMBER=8
[2026-01-08 12:35:37] Set ATHENA_CORE_NUMBER=8
[2026-01-08 12:35:37] Starting ATLAS job with PandaID=6963074659
[2026-01-08 12:35:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:11:17 (10251): wrapper (7.7.26015): starting
14:11:17 (10251): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 14:11:17] Arguments: --nthreads 8
[2026-01-08 14:11:17] Threads: 8
[2026-01-08 14:11:17] This job has been restarted, cleaning up previous attempt
[2026-01-08 14:11:17] Checking for CVMFS
[2026-01-08 14:11:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 14:11:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 14:11:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 14:11:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 14:11:18] 2.11.2.0 2830 135620 82364 154917 1 1 12177255 20275200 1 130560 0 36940148 99.891 7477235 32849 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 14:11:18] CVMFS is ok
[2026-01-08 14:11:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 14:11:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 14:11:18] Further information can be found at the LHC@home message board.
[2026-01-08 14:11:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 14:11:18] Checking for apptainer binary...
[2026-01-08 14:11:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 14:11:18] Running /usr/bin/apptainer --version
[2026-01-08 14:11:18] apptainer version 1.3.2-1.el7
[2026-01-08 14:11:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 14:11:20] c-204-20.aglt2.org
[2026-01-08 14:11:20] apptainer works
[2026-01-08 14:11:20] Set ATHENA_PROC_NUMBER=8
[2026-01-08 14:11:20] Set ATHENA_CORE_NUMBER=8
[2026-01-08 14:11:20] Starting ATLAS job with PandaID=6963074659
[2026-01-08 14:11:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 17:05:15]  *** The last 200 lines of the pilot log: ***
[2026-01-08 17:05:15] 2026-01-08 22:04:41,931 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-08 17:05:15] 2026-01-08 22:04:41,934 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2026-01-08 17:05:15] 2026-01-08 22:04:41,936 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963074659/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 17:05:15] 2026-01-08 22:04:41,937 | INFO     | extracted standard info from prmon json
[2026-01-08 17:05:15] 2026-01-08 22:04:41,937 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 17:05:15] 2026-01-08 22:04:41,937 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 17:05:15] 2026-01-08 22:04:41,938 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 17:05:15] 2026-01-08 22:04:41,938 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 17:05:15] 2026-01-08 22:04:41,941 | INFO     | fitting pss+swap vs Time
[2026-01-08 17:05:15] 2026-01-08 22:04:41,941 | INFO     | sum of square deviations: 1523386702.5
[2026-01-08 17:05:15] 2026-01-08 22:04:41,942 | INFO     | sum of deviations: 10878533697.999998
[2026-01-08 17:05:15] 2026-01-08 22:04:41,943 | INFO     | mean x: 1767904683.5
[2026-01-08 17:05:15] 2026-01-08 22:04:41,943 | INFO     | mean y: 2476404.6705882354
[2026-01-08 17:05:15] 2026-01-08 22:04:41,943 | INFO     | intersect: -12622164891.426567
[2026-01-08 17:05:15] 2026-01-08 22:04:41,943 | INFO     | chi2: 2.223247009907627
[2026-01-08 17:05:15] 2026-01-08 22:04:41,943 | INFO     | sum of square deviations: 1392881930.0
[2026-01-08 17:05:15] 2026-01-08 22:04:41,944 | INFO     | sum of deviations: 22294533637.999996
[2026-01-08 17:05:15] 2026-01-08 22:04:41,944 | INFO     | mean x: 1767904531.0
[2026-01-08 17:05:15] 2026-01-08 22:04:41,945 | INFO     | mean y: 2489416.309090909
[2026-01-08 17:05:15] 2026-01-08 22:04:41,945 | INFO     | intersect: -28294673599.62013
[2026-01-08 17:05:15] 2026-01-08 22:04:41,945 | INFO     | chi2: 1.3709890867174457
[2026-01-08 17:05:15] 2026-01-08 22:04:41,945 | INFO     | current chi2=1.3709890867174457 (change=38.33392868143749 %)
[2026-01-08 17:05:15] 2026-01-08 22:04:41,945 | INFO     | sum of square deviations: 1270051720.0
[2026-01-08 17:05:15] 2026-01-08 22:04:41,946 | INFO     | sum of deviations: 21702500181.5
[2026-01-08 17:05:15] 2026-01-08 22:04:41,946 | INFO     | mean x: 1767904378.5
[2026-01-08 17:05:15] 2026-01-08 22:04:41,946 | INFO     | mean y: 2488681.04375
[2026-01-08 17:05:15] 2026-01-08 22:04:41,947 | INFO     | intersect: -30207261434.700275
[2026-01-08 17:05:15] 2026-01-08 22:04:41,947 | INFO     | chi2: 1.3718029210380023
[2026-01-08 17:05:15] 2026-01-08 22:04:41,947 | INFO     | current chi2=1.3718029210380023 (change=-0.05936110859242178 %)
[2026-01-08 17:05:15] 2026-01-08 22:04:41,947 | INFO     | right removable region: 159
[2026-01-08 17:05:15] 2026-01-08 22:04:41,947 | INFO     | sum of square deviations: 1392881930.0
[2026-01-08 17:05:15] 2026-01-08 22:04:41,948 | INFO     | sum of deviations: -12677336651.0
[2026-01-08 17:05:15] 2026-01-08 22:04:41,948 | INFO     | mean x: 1767904836.0
[2026-01-08 17:05:15] 2026-01-08 22:04:41,949 | INFO     | mean y: 2503527.381818182
[2026-01-08 17:05:15] 2026-01-08 22:04:41,949 | INFO     | intersect: 16093117017.43043
[2026-01-08 17:05:15] 2026-01-08 22:04:41,949 | INFO     | chi2: 0.9133008730109267
[2026-01-08 17:05:15] 2026-01-08 22:04:41,949 | INFO     | current chi2=0.9133008730109267 (change=58.92040475300704 %)
[2026-01-08 17:05:15] 2026-01-08 22:04:41,949 | INFO     | sum of square deviations: 1270051720.0
[2026-01-08 17:05:15] 2026-01-08 22:04:41,950 | INFO     | sum of deviations: -15739060424.0
[2026-01-08 17:05:15] 2026-01-08 22:04:41,950 | INFO     | mean x: 1767904988.5
[2026-01-08 17:05:15] 2026-01-08 22:04:41,950 | INFO     | mean y: 2507266.7625
[2026-01-08 17:05:15] 2026-01-08 22:04:41,951 | INFO     | intersect: 21911192558.643784
[2026-01-08 17:05:15] 2026-01-08 22:04:41,951 | INFO     | chi2: 0.8819538535328155
[2026-01-08 17:05:15] 2026-01-08 22:04:41,951 | INFO     | current chi2=0.8819538535328155 (change=3.432277402162968 %)
[2026-01-08 17:05:15] 2026-01-08 22:04:41,951 | INFO     | left removable region: 20
[2026-01-08 17:05:15] 2026-01-08 22:04:41,951 | INFO     | sum of square deviations: 832722590.0
[2026-01-08 17:05:15] 2026-01-08 22:04:41,952 | INFO     | sum of deviations: -4028678815.0
[2026-01-08 17:05:15] 2026-01-08 22:04:41,952 | INFO     | mean x: 1767904958.0
[2026-01-08 17:05:15] 2026-01-08 22:04:41,952 | INFO     | mean y: 2522562.5539568346
[2026-01-08 17:05:15] 2026-01-08 22:04:41,952 | INFO     | intersect: 8555576528.855104
[2026-01-08 17:05:15] 2026-01-08 22:04:41,953 | INFO     | chi2: 0.004005468674130289
[2026-01-08 17:05:15] 2026-01-08 22:04:41,953 | INFO     | current memory leak: -4.84 B/s (using 139 data points, chi2=0.00)
[2026-01-08 17:05:15] 2026-01-08 22:04:41,953 | INFO     | could have reported an average CPU frequency of 2015 MHz (9 samples)
[2026-01-08 17:05:15] 2026-01-08 22:04:41,953 | INFO     | ..............................
[2026-01-08 17:05:15] 2026-01-08 22:04:41,954 | INFO     | . Timing measurements:
[2026-01-08 17:05:15] 2026-01-08 22:04:41,954 | INFO     | . get job = 0 s
[2026-01-08 17:05:15] 2026-01-08 22:04:41,954 | INFO     | . initial setup = 1 s
[2026-01-08 17:05:15] 2026-01-08 22:04:41,954 | INFO     | . payload setup = 8 s
[2026-01-08 17:05:15] 2026-01-08 22:04:41,954 | INFO     | . stage-in = 0 s
[2026-01-08 17:05:15] 2026-01-08 22:04:41,954 | INFO     | . payload execution = 10342 s
[2026-01-08 17:05:15] 2026-01-08 22:04:41,954 | INFO     | . stage-out = 2 s
[2026-01-08 17:05:15] 2026-01-08 22:04:41,954 | INFO     | . log creation = 0 s
[2026-01-08 17:05:15] 2026-01-08 22:04:41,954 | INFO     | ..............................
[2026-01-08 17:05:15] 2026-01-08 22:04:42,255 | INFO     | 
[2026-01-08 17:05:15] 2026-01-08 22:04:42,256 | INFO     | job summary report
[2026-01-08 17:05:15] 2026-01-08 22:04:42,256 | INFO     | --------------------------------------------------
[2026-01-08 17:05:15] 2026-01-08 22:04:42,256 | INFO     | PanDA job id: 6963074659
[2026-01-08 17:05:15] 2026-01-08 22:04:42,256 | INFO     | task id: 47898826
[2026-01-08 17:05:15] 2026-01-08 22:04:42,256 | INFO     | errors: (none)
[2026-01-08 17:05:15] 2026-01-08 22:04:42,256 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 17:05:15] 2026-01-08 22:04:42,257 | INFO     | pilot state: finished 
[2026-01-08 17:05:15] 2026-01-08 22:04:42,257 | INFO     | transexitcode: 0
[2026-01-08 17:05:15] 2026-01-08 22:04:42,257 | INFO     | exeerrorcode: 0
[2026-01-08 17:05:15] 2026-01-08 22:04:42,257 | INFO     | exeerrordiag: 
[2026-01-08 17:05:15] 2026-01-08 22:04:42,257 | INFO     | exitcode: 0
[2026-01-08 17:05:15] 2026-01-08 22:04:42,257 | INFO     | exitmsg: OK
[2026-01-08 17:05:15] 2026-01-08 22:04:42,257 | INFO     | cpuconsumptiontime: 78217 s
[2026-01-08 17:05:15] 2026-01-08 22:04:42,257 | INFO     | nevents: 400
[2026-01-08 17:05:15] 2026-01-08 22:04:42,258 | INFO     | neventsw: 0
[2026-01-08 17:05:15] 2026-01-08 22:04:42,258 | INFO     | pid: 20828
[2026-01-08 17:05:15] 2026-01-08 22:04:42,258 | INFO     | pgrp: 20828
[2026-01-08 17:05:15] 2026-01-08 22:04:42,258 | INFO     | corecount: 8
[2026-01-08 17:05:15] 2026-01-08 22:04:42,258 | INFO     | event service: False
[2026-01-08 17:05:15] 2026-01-08 22:04:42,258 | INFO     | sizes: {0: 2283798, 1: 2283997, 6: 2284259, 11: 2284287, 10355: 2312991, 10358: 2321989, 10360: 2322173, 10367: 2322431}
[2026-01-08 17:05:15] 2026-01-08 22:04:42,258 | INFO     | --------------------------------------------------
[2026-01-08 17:05:15] 2026-01-08 22:04:42,258 | INFO     | 
[2026-01-08 17:05:15] 2026-01-08 22:04:42,259 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 17:05:15] 2026-01-08 22:04:42,286 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,287 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,287 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,287 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,287 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,288 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,288 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,288 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,288 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,288 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,288 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,289 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,289 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,289 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,289 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,289 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,290 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,290 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 17:05:15] 2026-01-08 22:04:42,290 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,290 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 17:05:15] 2026-01-08 22:04:42,290 | INFO     | job 6963074659 has completed (purged errors)
[2026-01-08 17:05:15] 2026-01-08 22:04:42,291 | INFO     | overall cleanup function is called
[2026-01-08 17:05:15] 2026-01-08 22:04:43,299 | INFO     | --- collectZombieJob: --- 10, [20828]
[2026-01-08 17:05:15] 2026-01-08 22:04:43,300 | INFO     | zombie collector waiting for pid 20828
[2026-01-08 17:05:15] 2026-01-08 22:04:43,300 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 17:05:15] 2026-01-08 22:04:43,300 | INFO     | collected zombie processes
[2026-01-08 17:05:15] 2026-01-08 22:04:43,300 | INFO     | will attempt to kill all subprocesses of pid=20828
[2026-01-08 17:05:15] 2026-01-08 22:04:43,391 | INFO     | process IDs to be killed: [20828] (in reverse order)
[2026-01-08 17:05:15] 2026-01-08 22:04:43,452 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 17:05:15] 2026-01-08 22:04:43,452 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 17:05:15] 2026-01-08 22:04:43,457 | INFO     | did not find any defunct processes belonging to 20828
[2026-01-08 17:05:15] 2026-01-08 22:04:43,459 | INFO     | did not find any defunct processes belonging to 20828
[2026-01-08 17:05:15] 2026-01-08 22:04:43,460 | INFO     | ready for new job
[2026-01-08 17:05:15] 2026-01-08 22:04:43,460 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 17:05:15] 2026-01-08 22:04:43,462 | INFO     | ***************************************
[2026-01-08 17:05:15] 2026-01-08 22:04:43,462 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 17:05:15] 2026-01-08 22:04:43,462 | INFO     | ***************************************
[2026-01-08 17:05:15] 2026-01-08 22:04:43,462 | INFO     | 
[2026-01-08 17:05:15] 2026-01-08 22:04:43,462 | INFO     | architecture information:
[2026-01-08 17:05:15] 2026-01-08 22:04:43,463 | INFO     | executing command: cat /etc/os-release
[2026-01-08 17:05:15] 2026-01-08 22:04:43,481 | INFO     | cat /etc/os-release:
[2026-01-08 17:05:15] NAME="CentOS Linux"
[2026-01-08 17:05:15] VERSION="7 (Core)"
[2026-01-08 17:05:15] ID="centos"
[2026-01-08 17:05:15] ID_LIKE="rhel fedora"
[2026-01-08 17:05:15] VERSION_ID="7"
[2026-01-08 17:05:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 17:05:15] ANSI_COLOR="0;31"
[2026-01-08 17:05:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 17:05:15] HOME_URL="https://www.centos.org/"
[2026-01-08 17:05:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 17:05:15] 
[2026-01-08 17:05:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 17:05:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 17:05:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 17:05:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 17:05:15] 
[2026-01-08 17:05:15] 2026-01-08 22:04:43,481 | INFO     | ***************************************
[2026-01-08 17:05:15] 2026-01-08 22:04:43,985 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 17:05:15] 2026-01-08 22:04:44,004 | INFO     | sufficient remaining disk space (18656264192 B)
[2026-01-08 17:05:15] 2026-01-08 22:04:44,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 17:05:15] 2026-01-08 22:04:44,004 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 17:05:15] 2026-01-08 22:04:44,005 | INFO     | update_server=False
[2026-01-08 17:05:15] 2026-01-08 22:04:44,005 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 17:05:15] 2026-01-08 22:04:44,005 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 17:05:15] 2026-01-08 22:04:44,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 17:05:15] 2026-01-08 22:04:44,191 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 17:05:15] 2026-01-08 22:04:44,191 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 17:05:15] 2026-01-08 22:04:44,191 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 17:05:15] 2026-01-08 22:04:44,192 | INFO     | will abort loop
[2026-01-08 17:05:15] 2026-01-08 22:04:44,413 | INFO     | all payload control threads have been joined
[2026-01-08 17:05:15] 2026-01-08 22:04:44,998 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 17:05:15] 2026-01-08 22:04:45,011 | INFO     | [job] retrieve thread has finished
[2026-01-08 17:05:15] 2026-01-08 22:04:45,011 | INFO     | [job] queue monitor thread has finished
[2026-01-08 17:05:15] 2026-01-08 22:04:45,069 | INFO     | [data] copytool_in thread has finished
[2026-01-08 17:05:15] 2026-01-08 22:04:45,071 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 17:05:15] 2026-01-08 22:04:45,102 | INFO     | all data control threads have been joined
[2026-01-08 17:05:15] 2026-01-08 22:04:45,197 | INFO     | [job] job monitor thread has finished
[2026-01-08 17:05:15] 2026-01-08 22:04:45,213 | INFO     | [payload] validate_post thread has finished
[2026-01-08 17:05:15] 2026-01-08 22:04:45,418 | INFO     | [payload] control thread has finished
[2026-01-08 17:05:15] 2026-01-08 22:04:45,625 | INFO     | all job control threads have been joined
[2026-01-08 17:05:15] 2026-01-08 22:04:45,709 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 17:05:15] 2026-01-08 22:04:46,011 | INFO     | [data] copytool_out thread has finished
[2026-01-08 17:05:15] 2026-01-08 22:04:46,107 | INFO     | [data] control thread has finished
[2026-01-08 17:05:15] 2026-01-08 22:04:46,197 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 17:05:15] 2026-01-08 22:04:46,208 | INFO     | [job] validate thread has finished
[2026-01-08 17:05:15] 2026-01-08 22:04:46,540 | INFO     | [payload] failed_post thread has finished
[2026-01-08 17:05:15] 2026-01-08 22:04:46,631 | INFO     | [job] control thread has finished
[2026-01-08 17:05:15] 2026-01-08 22:04:49,004 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 17:05:15] 2026-01-08 22:04:54,013 | INFO     | [monitor] cgroup control has ended
[2026-01-08 17:05:15] 2026-01-08 22:04:54,436 | INFO     | job.realtimelogging is not enabled
[2026-01-08 17:05:15] 2026-01-08 22:04:55,442 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 17:05:15] 2026-01-08 22:04:57,130 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140669685319488)>', '<ExcThread(monitor, started 140668424939264)>']
[2026-01-08 17:05:15] 2026-01-08 22:05:02,155 | INFO     | all workflow threads have been joined
[2026-01-08 17:05:15] 2026-01-08 22:05:02,156 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 17:05:15] 2026-01-08 22:05:02,156 | INFO     | traces error code: 0
[2026-01-08 17:05:15] 2026-01-08 22:05:02,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 17:05:15] 2026-01-08 22:05:14,874 | INFO     | PID=14406 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-08 17:05:15] 2026-01-08 22:05:14,876 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 17:05:15] 2026-01-08 22:05:14,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 17:05:15] 2026-01-08 22:05:14,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 17:05:15] 2026-01-08 22:05:14,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 17:05:15] 2026-01-08 22:05:14,876 | INFO     | [monitor] control thread has ended
[2026-01-08 17:05:15] 2026-01-08 22:05:14,995 [wrapper] ==== pilot stdout END ====
[2026-01-08 17:05:15] 2026-01-08 22:05:15,000 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 17:05:15] 2026-01-08 22:05:15,005 [wrapper] pilotpid: 14406
[2026-01-08 17:05:15] 2026-01-08 22:05:15,009 [wrapper] Pilot exit status: 0
[2026-01-08 17:05:15] 2026-01-08 22:05:15,027 [wrapper] pandaids: 6963074659 6963074659
[2026-01-08 17:05:15] 2026-01-08 22:05:15,072 [wrapper] cleanup supervisor_pilot 28900 14407
[2026-01-08 17:05:15] 2026-01-08 22:05:15,077 [wrapper] Test setup, not cleaning
[2026-01-08 17:05:15] 2026-01-08 22:05:15,082 [wrapper] apfmon messages muted
[2026-01-08 17:05:15] 2026-01-08 22:05:15,087 [wrapper] ==== wrapper stdout END ====
[2026-01-08 17:05:15] 2026-01-08 22:05:15,091 [wrapper] ==== wrapper stderr END ====
[2026-01-08 17:05:15]  *** Error codes and diagnostics ***
[2026-01-08 17:05:15]     "exeErrorCode": 0,
[2026-01-08 17:05:15]     "exeErrorDiag": "",
[2026-01-08 17:05:15]     "pilotErrorCode": 0,
[2026-01-08 17:05:15]     "pilotErrorDiag": "",
[2026-01-08 17:05:15]  *** Listing of results directory ***
[2026-01-08 17:05:15] total 661248
[2026-01-08 17:05:15] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-08 17:05:15] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 06:06 queuedata.json
[2026-01-08 17:05:15] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 06:06 pilot3.tar.gz
[2026-01-08 17:05:15] -rwx------ 1 boincer umatlas     36322 Jan  8 06:06 runpilot2-wrapper.sh
[2026-01-08 17:05:15] -rw-r--r-- 1 boincer umatlas       100 Jan  8 12:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 17:05:15] -rwxr-xr-x 1 boincer umatlas      7986 Jan  8 12:35 run_atlas
[2026-01-08 17:05:15] -rw-r--r-- 1 boincer umatlas       105 Jan  8 12:35 job.xml
[2026-01-08 17:05:15] -rw-r--r-- 3 boincer umatlas 224324011 Jan  8 12:35 EVNT.47898824._000917.pool.root.1
[2026-01-08 17:05:15] -rw-r--r-- 3 boincer umatlas 224324011 Jan  8 12:35 ATLAS.root_0
[2026-01-08 17:05:15] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 12:35 start_atlas.sh
[2026-01-08 17:05:15] drwxrwx--x 2 boincer umatlas      4096 Jan  8 12:35 shared
[2026-01-08 17:05:15] -rw-r--r-- 2 boincer umatlas    592396 Jan  8 12:35 input.tar.gz
[2026-01-08 17:05:15] -rw-r--r-- 1 boincer umatlas         0 Jan  8 12:35 boinc_lockfile
[2026-01-08 17:05:15] -rw-r--r-- 1 boincer umatlas      2519 Jan  8 14:11 pandaJob.out
[2026-01-08 17:05:15] -rw------- 1 boincer umatlas        57 Jan  8 14:11 setup.sh.local
[2026-01-08 17:05:15] -rw------- 1 boincer umatlas    989829 Jan  8 14:11 agis_schedconf.cvmfs.json
[2026-01-08 17:05:15] -rw-r--r-- 1 boincer umatlas      5912 Jan  8 17:02 init_data.xml
[2026-01-08 17:05:15] -rw------- 1 boincer umatlas 220823339 Jan  8 17:03 HITS.47898826._023025.pool.root.1
[2026-01-08 17:05:15] -rw-r--r-- 1 boincer umatlas       531 Jan  8 17:04 boinc_task_state.xml
[2026-01-08 17:05:15] -rw------- 1 boincer umatlas      1062 Jan  8 17:04 memory_monitor_summary.json
[2026-01-08 17:05:15] -rw------- 1 boincer umatlas   1516240 Jan  8 17:04 agis_ddmendpoints.agis.ALL.json
[2026-01-08 17:05:15] -rw------- 1 boincer umatlas    423694 Jan  8 17:04 log.47898826._023025.job.log.tgz.1
[2026-01-08 17:05:15] -rw------- 1 boincer umatlas      7850 Jan  8 17:04 heartbeat.json
[2026-01-08 17:05:15] -rw-r--r-- 1 boincer umatlas      8192 Jan  8 17:05 boinc_mmap_file
[2026-01-08 17:05:15] -rw-r--r-- 1 boincer umatlas        29 Jan  8 17:05 wrapper_checkpoint.txt
[2026-01-08 17:05:15] -rw------- 1 boincer umatlas        96 Jan  8 17:05 pilot_heartbeat.json
[2026-01-08 17:05:15] -rw------- 1 boincer umatlas       745 Jan  8 17:05 pilotlog.txt
[2026-01-08 17:05:15] -rw------- 1 boincer umatlas   1440870 Jan  8 17:05 log.47898826._023025.job.log.1
[2026-01-08 17:05:15] -rw------- 1 boincer umatlas       357 Jan  8 17:05 output.list
[2026-01-08 17:05:15] -rw-r--r-- 1 boincer umatlas       620 Jan  8 17:05 runtime_log
[2026-01-08 17:05:15] -rw------- 1 boincer umatlas   1884160 Jan  8 17:05 result.tar.gz
[2026-01-08 17:05:15] -rw------- 1 boincer umatlas       788 Jan  8 17:05 o72KDm112x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxweKDm19bxqn.diag
[2026-01-08 17:05:15] -rw-r--r-- 1 boincer umatlas      9428 Jan  8 17:05 runtime_log.err
[2026-01-08 17:05:15] -rw-r--r-- 1 boincer umatlas     23179 Jan  8 17:05 stderr.txt
[2026-01-08 17:05:15] HITS file was successfully produced:
[2026-01-08 17:05:15] -rw------- 1 boincer umatlas 220823339 Jan  8 17:03 shared/HITS.pool.root.1
[2026-01-08 17:05:15]  *** Contents of shared directory: ***
[2026-01-08 17:05:15] total 437160
[2026-01-08 17:05:15] -rw-r--r-- 3 boincer umatlas 224324011 Jan  8 12:35 ATLAS.root_0
[2026-01-08 17:05:15] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 12:35 start_atlas.sh
[2026-01-08 17:05:15] -rw-r--r-- 2 boincer umatlas    592396 Jan  8 12:35 input.tar.gz
[2026-01-08 17:05:15] -rw------- 1 boincer umatlas 220823339 Jan  8 17:03 HITS.pool.root.1
[2026-01-08 17:05:15] -rw------- 1 boincer umatlas   1884160 Jan  8 17:05 result.tar.gz
17:05:16 (10251): run_atlas exited; CPU time 78164.613340
17:05:16 (10251): called boinc_finish(0)

</stderr_txt>
]]>

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