Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:19:47 (8739): wrapper (7.7.26015): starting
04:19:47 (8739): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 04:19:47] Arguments: --nthreads 8
[2026-01-09 04:19:47] Threads: 8
[2026-01-09 04:19:47] Checking for CVMFS
[2026-01-09 04:19:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 04:19:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 04:19:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 04:19:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 04:19:50] 2.11.2.0 17161 15109 100376 154929 0 60 20614363 25165824 96 130560 0 1694323 99.222 2703227 3252 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 04:19:50] CVMFS is ok
[2026-01-09 04:19:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 04:19:50] Checking for apptainer binary...
[2026-01-09 04:19:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 04:19:50] Running /usr/bin/apptainer --version
[2026-01-09 04:19:51] apptainer version 1.3.2-1.el7
[2026-01-09 04:19:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 04:20:04] cg-vwn491.simple-grid.lan
[2026-01-09 04:20:04] apptainer works
[2026-01-09 04:20:04] Set ATHENA_PROC_NUMBER=8
[2026-01-09 04:20:04] Set ATHENA_CORE_NUMBER=8
[2026-01-09 04:20:05] Starting ATLAS job with PandaID=6963074291
[2026-01-09 04:20:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 07:40:42]  *** The last 200 lines of the pilot log: ***
[2026-01-09 07:40:42] 2026-01-09 06:39:45,077 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 07:40:42] 2026-01-09 06:39:45,291 | INFO     | time since job start (11728s) is within the limit (174528.0s)
[2026-01-09 07:40:42] 2026-01-09 06:39:45,892 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 07:40:42] 2026-01-09 06:39:45,893 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-09 07:40:42] 2026-01-09 06:39:45,895 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6963074291/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 07:40:42] 2026-01-09 06:39:45,896 | INFO     | extracted standard info from prmon json
[2026-01-09 07:40:42] 2026-01-09 06:39:45,896 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 07:40:42] 2026-01-09 06:39:45,896 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 07:40:42] 2026-01-09 06:39:45,897 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 07:40:42] 2026-01-09 06:39:45,897 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 07:40:42] 2026-01-09 06:39:45,901 | INFO     | fitting pss+swap vs Time
[2026-01-09 07:40:42] 2026-01-09 06:39:45,901 | INFO     | sum of square deviations: 1931608310.0
[2026-01-09 07:40:42] 2026-01-09 06:39:45,903 | INFO     | sum of deviations: 69898377257.00003
[2026-01-09 07:40:42] 2026-01-09 06:39:45,903 | INFO     | mean x: 1767935172.5
[2026-01-09 07:40:42] 2026-01-09 06:39:45,903 | INFO     | mean y: 2419499.902173913
[2026-01-09 07:40:42] 2026-01-09 06:39:45,903 | INFO     | intersect: -63973180011.43169
[2026-01-09 07:40:42] 2026-01-09 06:39:45,904 | INFO     | chi2: 8.250560249493839
[2026-01-09 07:40:42] 2026-01-09 06:39:45,904 | INFO     | sum of square deviations: 1778377530.0
[2026-01-09 07:40:42] 2026-01-09 06:39:45,905 | INFO     | sum of deviations: 79972202309.99997
[2026-01-09 07:40:42] 2026-01-09 06:39:45,905 | INFO     | mean x: 1767935020.0
[2026-01-09 07:40:42] 2026-01-09 06:39:45,906 | INFO     | mean y: 2429258.6983240223
[2026-01-09 07:40:42] 2026-01-09 06:39:45,906 | INFO     | intersect: -79500181804.0797
[2026-01-09 07:40:42] 2026-01-09 06:39:45,906 | INFO     | chi2: 7.581390656782863
[2026-01-09 07:40:42] 2026-01-09 06:39:45,906 | INFO     | current chi2=7.581390656782863 (change=8.110595795625262 %)
[2026-01-09 07:40:42] 2026-01-09 06:39:45,907 | INFO     | right removable region: 178
[2026-01-09 07:40:42] 2026-01-09 06:39:45,907 | INFO     | sum of square deviations: 1778377530.0
[2026-01-09 07:40:42] 2026-01-09 06:39:45,908 | INFO     | sum of deviations: 6435584972.999994
[2026-01-09 07:40:42] 2026-01-09 06:39:45,908 | INFO     | mean x: 1767935325.0
[2026-01-09 07:40:42] 2026-01-09 06:39:45,908 | INFO     | mean y: 2482605.0726256985
[2026-01-09 07:40:42] 2026-01-09 06:39:45,909 | INFO     | intersect: -6395314161.2899475
[2026-01-09 07:40:42] 2026-01-09 06:39:45,909 | INFO     | chi2: 3.090553312972643
[2026-01-09 07:40:42] 2026-01-09 06:39:45,909 | INFO     | current chi2=3.090553312972643 (change=62.54129150608597 %)
[2026-01-09 07:40:42] 2026-01-09 06:39:45,909 | INFO     | sum of square deviations: 1633472487.5
[2026-01-09 07:40:42] 2026-01-09 06:39:45,911 | INFO     | sum of deviations: -33538885799.999992
[2026-01-09 07:40:42] 2026-01-09 06:39:45,911 | INFO     | mean x: 1767935477.5
[2026-01-09 07:40:42] 2026-01-09 06:39:45,911 | INFO     | mean y: 2524472.7126436783
[2026-01-09 07:40:42] 2026-01-09 06:39:45,911 | INFO     | intersect: 36302239671.70583
[2026-01-09 07:40:42] 2026-01-09 06:39:45,912 | INFO     | chi2: 0.9980092974363542
[2026-01-09 07:40:42] 2026-01-09 06:39:45,912 | INFO     | current chi2=0.9980092974363542 (change=67.7077469187412 %)
[2026-01-09 07:40:42] 2026-01-09 06:39:45,912 | INFO     | sum of square deviations: 1496660620.0
[2026-01-09 07:40:42] 2026-01-09 06:39:45,913 | INFO     | sum of deviations: -38489950434.0
[2026-01-09 07:40:42] 2026-01-09 06:39:45,913 | INFO     | mean x: 1767935630.0
[2026-01-09 07:40:42] 2026-01-09 06:39:45,914 | INFO     | mean y: 2529947.2662721896
[2026-01-09 07:40:42] 2026-01-09 06:39:45,914 | INFO     | intersect: 45468919494.68589
[2026-01-09 07:40:42] 2026-01-09 06:39:45,914 | INFO     | chi2: 0.9298487847885035
[2026-01-09 07:40:42] 2026-01-09 06:39:45,914 | INFO     | current chi2=0.9298487847885035 (change=6.8296470606975985 %)
[2026-01-09 07:40:42] 2026-01-09 06:39:45,914 | INFO     | left removable region: 30
[2026-01-09 07:40:42] 2026-01-09 06:39:45,915 | INFO     | sum of square deviations: 1005179777.0
[2026-01-09 07:40:42] 2026-01-09 06:39:45,916 | INFO     | sum of deviations: -12461411992.499996
[2026-01-09 07:40:42] 2026-01-09 06:39:45,916 | INFO     | mean x: 1767935904.5
[2026-01-09 07:40:42] 2026-01-09 06:39:45,916 | INFO     | mean y: 2525359.641891892
[2026-01-09 07:40:42] 2026-01-09 06:39:45,916 | INFO     | intersect: 21919975537.618988
[2026-01-09 07:40:42] 2026-01-09 06:39:45,917 | INFO     | chi2: 0.10766196538056841
[2026-01-09 07:40:42] 2026-01-09 06:39:45,917 | INFO     | current memory leak: -12.40 B/s (using 148 data points, chi2=0.11)
[2026-01-09 07:40:42] 2026-01-09 06:39:45,917 | INFO     | could have reported an average CPU frequency of 2249 MHz (9 samples)
[2026-01-09 07:40:42] 2026-01-09 06:39:45,918 | INFO     | ..............................
[2026-01-09 07:40:42] 2026-01-09 06:39:45,918 | INFO     | . Timing measurements:
[2026-01-09 07:40:42] 2026-01-09 06:39:45,918 | INFO     | . get job = 0 s
[2026-01-09 07:40:42] 2026-01-09 06:39:45,918 | INFO     | . initial setup = 5 s
[2026-01-09 07:40:42] 2026-01-09 06:39:45,918 | INFO     | . payload setup = 146 s
[2026-01-09 07:40:42] 2026-01-09 06:39:45,918 | INFO     | . stage-in = 0 s
[2026-01-09 07:40:42] 2026-01-09 06:39:45,918 | INFO     | . payload execution = 11357 s
[2026-01-09 07:40:42] 2026-01-09 06:39:45,918 | INFO     | . stage-out = 1 s
[2026-01-09 07:40:42] 2026-01-09 06:39:45,918 | INFO     | . log creation = 0 s
[2026-01-09 07:40:42] 2026-01-09 06:39:45,918 | INFO     | ..............................
[2026-01-09 07:40:42] 2026-01-09 06:39:46,419 | INFO     | 
[2026-01-09 07:40:42] 2026-01-09 06:39:46,419 | INFO     | job summary report
[2026-01-09 07:40:42] 2026-01-09 06:39:46,419 | INFO     | --------------------------------------------------
[2026-01-09 07:40:42] 2026-01-09 06:39:46,420 | INFO     | PanDA job id: 6963074291
[2026-01-09 07:40:42] 2026-01-09 06:39:46,420 | INFO     | task id: 47898826
[2026-01-09 07:40:42] 2026-01-09 06:39:46,420 | INFO     | errors: (none)
[2026-01-09 07:40:42] 2026-01-09 06:39:46,420 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 07:40:42] 2026-01-09 06:39:46,420 | INFO     | pilot state: finished 
[2026-01-09 07:40:42] 2026-01-09 06:39:46,420 | INFO     | transexitcode: 0
[2026-01-09 07:40:42] 2026-01-09 06:39:46,420 | INFO     | exeerrorcode: 0
[2026-01-09 07:40:42] 2026-01-09 06:39:46,420 | INFO     | exeerrordiag: 
[2026-01-09 07:40:42] 2026-01-09 06:39:46,420 | INFO     | exitcode: 0
[2026-01-09 07:40:42] 2026-01-09 06:39:46,421 | INFO     | exitmsg: OK
[2026-01-09 07:40:42] 2026-01-09 06:39:46,421 | INFO     | cpuconsumptiontime: 69329 s
[2026-01-09 07:40:42] 2026-01-09 06:39:46,421 | INFO     | nevents: 400
[2026-01-09 07:40:42] 2026-01-09 06:39:46,421 | INFO     | neventsw: 0
[2026-01-09 07:40:42] 2026-01-09 06:39:46,421 | INFO     | pid: 19002
[2026-01-09 07:40:42] 2026-01-09 06:39:46,422 | INFO     | pgrp: 19002
[2026-01-09 07:40:42] 2026-01-09 06:39:46,422 | INFO     | corecount: 8
[2026-01-09 07:40:42] 2026-01-09 06:39:46,422 | INFO     | event service: False
[2026-01-09 07:40:42] 2026-01-09 06:39:46,422 | INFO     | sizes: {0: 2283742, 1: 2283997, 12: 2283997, 23: 2284025, 34: 2284053, 44: 2284081, 55: 2284237, 66: 2284265, 76: 2284293, 87: 2284349, 98: 2284377, 104: 2284947, 
[2026-01-09 07:40:42] 2026-01-09 06:39:46,422 | INFO     | --------------------------------------------------
[2026-01-09 07:40:42] 2026-01-09 06:39:46,422 | INFO     | 
[2026-01-09 07:40:42] 2026-01-09 06:39:46,422 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-01-09 07:40:42] 2026-01-09 06:39:46,477 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,477 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,477 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,478 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,478 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,478 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,478 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,478 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,478 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,478 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,478 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,478 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,479 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,479 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,479 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,479 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,479 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,479 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 07:40:42] 2026-01-09 06:39:46,479 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,479 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 07:40:42] 2026-01-09 06:39:46,480 | INFO     | job 6963074291 has completed (purged errors)
[2026-01-09 07:40:42] 2026-01-09 06:39:46,480 | INFO     | overall cleanup function is called
[2026-01-09 07:40:42] 2026-01-09 06:39:47,488 | INFO     | --- collectZombieJob: --- 10, [19002]
[2026-01-09 07:40:42] 2026-01-09 06:39:47,488 | INFO     | zombie collector waiting for pid 19002
[2026-01-09 07:40:42] 2026-01-09 06:39:47,488 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 07:40:42] 2026-01-09 06:39:47,488 | INFO     | collected zombie processes
[2026-01-09 07:40:42] 2026-01-09 06:39:47,488 | INFO     | will attempt to kill all subprocesses of pid=19002
[2026-01-09 07:40:42] 2026-01-09 06:39:47,550 | INFO     | process IDs to be killed: [19002] (in reverse order)
[2026-01-09 07:40:42] 2026-01-09 06:39:47,594 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 07:40:42] 2026-01-09 06:39:47,594 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 07:40:42] 2026-01-09 06:39:47,596 | INFO     | did not find any defunct processes belonging to 19002
[2026-01-09 07:40:42] 2026-01-09 06:39:47,598 | INFO     | did not find any defunct processes belonging to 19002
[2026-01-09 07:40:42] 2026-01-09 06:39:47,598 | INFO     | ready for new job
[2026-01-09 07:40:42] 2026-01-09 06:39:47,598 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 07:40:42] 2026-01-09 06:39:47,600 | INFO     | ***************************************
[2026-01-09 07:40:42] 2026-01-09 06:39:47,600 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 07:40:42] 2026-01-09 06:39:47,600 | INFO     | ***************************************
[2026-01-09 07:40:42] 2026-01-09 06:39:47,600 | INFO     | 
[2026-01-09 07:40:42] 2026-01-09 06:39:47,601 | INFO     | pilot is running in a VM
[2026-01-09 07:40:42] 2026-01-09 06:39:47,601 | INFO     | architecture information:
[2026-01-09 07:40:42] 2026-01-09 06:39:47,602 | INFO     | executing command: cat /etc/os-release
[2026-01-09 07:40:42] 2026-01-09 06:39:47,626 | INFO     | cat /etc/os-release:
[2026-01-09 07:40:42] NAME="CentOS Linux"
[2026-01-09 07:40:42] VERSION="7 (Core)"
[2026-01-09 07:40:42] ID="centos"
[2026-01-09 07:40:42] ID_LIKE="rhel fedora"
[2026-01-09 07:40:42] VERSION_ID="7"
[2026-01-09 07:40:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 07:40:42] ANSI_COLOR="0;31"
[2026-01-09 07:40:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 07:40:42] HOME_URL="https://www.centos.org/"
[2026-01-09 07:40:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 07:40:42] 
[2026-01-09 07:40:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 07:40:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 07:40:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 07:40:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 07:40:42] 
[2026-01-09 07:40:42] 2026-01-09 06:39:47,626 | INFO     | ***************************************
[2026-01-09 07:40:42] 2026-01-09 06:39:48,129 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-01-09 07:40:42] 2026-01-09 06:39:48,152 | INFO     | sufficient remaining disk space (498068357120 B)
[2026-01-09 07:40:42] 2026-01-09 06:39:48,153 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 07:40:42] 2026-01-09 06:39:48,153 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 07:40:42] 2026-01-09 06:39:48,153 | INFO     | update_server=False
[2026-01-09 07:40:42] 2026-01-09 06:39:48,153 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 07:40:42] 2026-01-09 06:39:48,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 07:40:42] 2026-01-09 06:39:48,585 | INFO     | aborting loop
[2026-01-09 07:40:42] 2026-01-09 06:39:49,141 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 07:40:42] 2026-01-09 06:39:49,159 | INFO     | [job] retrieve thread has finished
[2026-01-09 07:40:42] 2026-01-09 06:39:49,179 | INFO     | [payload] failed_post thread has finished
[2026-01-09 07:40:42] 2026-01-09 06:39:49,201 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 07:40:42] 2026-01-09 06:39:49,214 | INFO     | all data control threads have been joined
[2026-01-09 07:40:42] 2026-01-09 06:39:49,253 | INFO     | all payload control threads have been joined
[2026-01-09 07:40:42] 2026-01-09 06:39:49,372 | INFO     | [payload] validate_post thread has finished
[2026-01-09 07:40:42] 2026-01-09 06:39:49,488 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 07:40:42] 2026-01-09 06:39:49,521 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 07:40:42] 2026-01-09 06:39:49,522 | INFO     | [data] copytool_in thread has finished
[2026-01-09 07:40:42] 2026-01-09 06:39:49,551 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 07:40:42] 2026-01-09 06:39:49,591 | INFO     | [job] job monitor thread has finished
[2026-01-09 07:40:42] 2026-01-09 06:39:49,813 | INFO     | all job control threads have been joined
[2026-01-09 07:40:42] 2026-01-09 06:39:50,069 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 07:40:42] 2026-01-09 06:39:50,219 | INFO     | [data] control thread has finished
[2026-01-09 07:40:42] 2026-01-09 06:39:50,259 | INFO     | [payload] control thread has finished
[2026-01-09 07:40:42] 2026-01-09 06:39:50,432 | INFO     | [job] validate thread has finished
[2026-01-09 07:40:42] 2026-01-09 06:39:50,819 | INFO     | [job] control thread has finished
[2026-01-09 07:40:42] 2026-01-09 06:39:51,045 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 07:40:42] 2026-01-09 06:39:51,147 | INFO     | [data] copytool_out thread has finished
[2026-01-09 07:40:42] 2026-01-09 06:39:52,050 | INFO     | [job] queue monitor thread has finished
[2026-01-09 07:40:42] 2026-01-09 06:39:53,495 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 07:40:42] 2026-01-09 06:40:18,371 | INFO     | PID=12466 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 07:40:42] 2026-01-09 06:40:18,372 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 07:40:42] 2026-01-09 06:40:18,372 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 07:40:42] 2026-01-09 06:40:18,372 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 07:40:42] 2026-01-09 06:40:36,342 | INFO     | [monitor] cgroup control has ended
[2026-01-09 07:40:42] 2026-01-09 06:40:36,969 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140705913689920)>', '<ExcThread(monitor, started 140705695094528)>']
[2026-01-09 07:40:42] 2026-01-09 06:40:37,471 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 07:40:42] 2026-01-09 06:40:37,471 | INFO     | [monitor] control thread has ended
[2026-01-09 07:40:42] 2026-01-09 06:40:41,995 | INFO     | all workflow threads have been joined
[2026-01-09 07:40:42] 2026-01-09 06:40:41,995 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 07:40:42] 2026-01-09 06:40:41,995 | INFO     | traces error code: 0
[2026-01-09 07:40:42] 2026-01-09 06:40:41,996 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 07:40:42] 2026-01-09 06:40:42,144 [wrapper] ==== pilot stdout END ====
[2026-01-09 07:40:42] 2026-01-09 06:40:42,149 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 07:40:42] 2026-01-09 06:40:42,155 [wrapper] pilotpid: 12466
[2026-01-09 07:40:42] 2026-01-09 06:40:42,160 [wrapper] Pilot exit status: 0
[2026-01-09 07:40:42] 2026-01-09 06:40:42,180 [wrapper] pandaids: 6963074291
[2026-01-09 07:40:42] 2026-01-09 06:40:42,221 [wrapper] cleanup supervisor_pilot  5962 12467
[2026-01-09 07:40:42] 2026-01-09 06:40:42,229 [wrapper] Test setup, not cleaning
[2026-01-09 07:40:42] 2026-01-09 06:40:42,233 [wrapper] apfmon messages muted
[2026-01-09 07:40:42] 2026-01-09 06:40:42,236 [wrapper] ==== wrapper stdout END ====
[2026-01-09 07:40:42] 2026-01-09 06:40:42,239 [wrapper] ==== wrapper stderr END ====
[2026-01-09 07:40:42]  *** Error codes and diagnostics ***
[2026-01-09 07:40:42]     "exeErrorCode": 0,
[2026-01-09 07:40:42]     "exeErrorDiag": "",
[2026-01-09 07:40:42]     "pilotErrorCode": 0,
[2026-01-09 07:40:42]     "pilotErrorDiag": "",
[2026-01-09 07:40:42]  *** Listing of results directory ***
[2026-01-09 07:40:42] total 441308
[2026-01-09 07:40:42] -rw-r--r--. 1 boinc boinc      5112 Jan  8 12:06 queuedata.json
[2026-01-09 07:40:42] -rw-r--r--. 1 boinc boinc    579449 Jan  8 12:06 pilot3.tar.gz
[2026-01-09 07:40:42] -rwx------. 1 boinc boinc     36322 Jan  8 12:06 runpilot2-wrapper.sh
[2026-01-09 07:40:42] -rw-r--r--. 1 boinc boinc       100 Jan  9 04:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 07:40:42] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 04:19 run_atlas
[2026-01-09 07:40:42] -rw-r--r--. 1 boinc boinc       105 Jan  9 04:19 job.xml
[2026-01-09 07:40:42] -rw-r--r--. 2 boinc boinc 226193396 Jan  9 04:19 EVNT.47898824._000916.pool.root.1
[2026-01-09 07:40:42] -rw-r--r--. 2 boinc boinc     15847 Jan  9 04:19 start_atlas.sh
[2026-01-09 07:40:42] drwxrwx--x. 2 boinc boinc        68 Jan  9 04:19 shared
[2026-01-09 07:40:42] -rw-r--r--. 2 boinc boinc    592400 Jan  9 04:19 input.tar.gz
[2026-01-09 07:40:42] -rw-r--r--. 1 boinc boinc      6390 Jan  9 04:19 init_data.xml
[2026-01-09 07:40:42] -rw-r--r--. 1 boinc boinc         0 Jan  9 04:19 boinc_lockfile
[2026-01-09 07:40:42] -rw-r--r--. 1 boinc boinc      2519 Jan  9 04:20 pandaJob.out
[2026-01-09 07:40:42] -rw-------. 1 boinc boinc    989771 Jan  9 04:24 agis_schedconf.cvmfs.json
[2026-01-09 07:40:42] drwx------. 5 boinc boinc      4096 Jan  9 04:24 pilot3
[2026-01-09 07:40:42] -rw-r--r--. 1 boinc boinc       531 Jan  9 07:38 boinc_task_state.xml
[2026-01-09 07:40:42] -rw-------. 1 boinc boinc 217851749 Jan  9 07:38 HITS.47898826._022988.pool.root.1
[2026-01-09 07:40:42] -rw-------. 1 boinc boinc      1018 Jan  9 07:39 memory_monitor_summary.json
[2026-01-09 07:40:42] -rw-------. 1 boinc boinc   1516240 Jan  9 07:39 agis_ddmendpoints.agis.ALL.json
[2026-01-09 07:40:42] -rw-------. 1 boinc boinc    418936 Jan  9 07:39 log.47898826._022988.job.log.tgz.1
[2026-01-09 07:40:42] -rw-------. 1 boinc boinc      7783 Jan  9 07:39 heartbeat.json
[2026-01-09 07:40:42] -rw-------. 1 boinc boinc        95 Jan  9 07:40 pilot_heartbeat.json
[2026-01-09 07:40:42] -rw-r--r--. 1 boinc boinc        28 Jan  9 07:40 wrapper_checkpoint.txt
[2026-01-09 07:40:42] -rw-r--r--. 1 boinc boinc      8192 Jan  9 07:40 boinc_mmap_file
[2026-01-09 07:40:42] -rw-------. 1 boinc boinc      4809 Jan  9 07:40 pilotlog.txt
[2026-01-09 07:40:42] -rw-------. 1 boinc boinc   1558602 Jan  9 07:40 log.47898826._022988.job.log.1
[2026-01-09 07:40:42] -rw-------. 1 boinc boinc       357 Jan  9 07:40 output.list
[2026-01-09 07:40:42] -rw-r--r--. 1 boinc boinc       620 Jan  9 07:40 runtime_log
[2026-01-09 07:40:42] -rw-------. 1 boinc boinc   1996800 Jan  9 07:40 result.tar.gz
[2026-01-09 07:40:42] -rw-r--r--. 1 boinc boinc      8817 Jan  9 07:40 runtime_log.err
[2026-01-09 07:40:42] -rw-------. 1 boinc boinc       657 Jan  9 07:40 K2QODm012x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcweKDmV47WTn.diag
[2026-01-09 07:40:42] -rw-r--r--. 1 boinc boinc     20812 Jan  9 07:40 stderr.txt
[2026-01-09 07:40:42] HITS file was successfully produced:
[2026-01-09 07:40:42] -rw-------. 1 boinc boinc 217851749 Jan  9 07:38 shared/HITS.pool.root.1
[2026-01-09 07:40:42]  *** Contents of shared directory: ***
[2026-01-09 07:40:42] total 436188
[2026-01-09 07:40:42] -rw-r--r--. 2 boinc boinc 226193396 Jan  9 04:19 ATLAS.root_0
[2026-01-09 07:40:42] -rw-r--r--. 2 boinc boinc     15847 Jan  9 04:19 start_atlas.sh
[2026-01-09 07:40:42] -rw-r--r--. 2 boinc boinc    592400 Jan  9 04:19 input.tar.gz
[2026-01-09 07:40:42] -rw-------. 1 boinc boinc 217851749 Jan  9 07:38 HITS.pool.root.1
[2026-01-09 07:40:42] -rw-------. 1 boinc boinc   1996800 Jan  9 07:40 result.tar.gz
07:40:44 (8739): run_atlas exited; CPU time 69434.570978
07:40:44 (8739): called boinc_finish(0)

</stderr_txt>
]]>

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