Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:52:57 (2323377): wrapper (7.7.26015): starting
12:52:57 (2323377): wrapper: running run_atlas (--nthreads 9)
[2026-01-08 12:52:57] Arguments: --nthreads 9
[2026-01-08 12:52:57] Threads: 9
[2026-01-08 12:52:57] Checking for CVMFS
[2026-01-08 12:52:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 12:52:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 12:52:59] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 12:53:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 12:53:00] 2.13.3.0 12257 92245 672244 154915 3 276 19273920 32935937 36685 16776704 0 629200672 99.727 422652349 23455 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 12:53:00] CVMFS is ok
[2026-01-08 12:53:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 12:53:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 12:53:01] Further information can be found at the LHC@home message board.
[2026-01-08 12:53:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 12:53:01] Checking for apptainer binary...
[2026-01-08 12:53:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 12:53:01] Running /usr/bin/apptainer --version
[2026-01-08 12:53:01] apptainer version 1.4.5-2.el9
[2026-01-08 12:53:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 12:53:02] c-1-3.aglt2.org
[2026-01-08 12:53:02] apptainer works
[2026-01-08 12:53:02] Set ATHENA_PROC_NUMBER=9
[2026-01-08 12:53:02] Set ATHENA_CORE_NUMBER=9
[2026-01-08 12:53:02] Starting ATLAS job with PandaID=6962918322
[2026-01-08 12:53:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:00:15 (2323377): BOINC client no longer exists - exiting
18:00:15 (2323377): timer handler: client dead, exiting
18:01:01 (4094705): wrapper (7.7.26015): starting
18:01:01 (4094705): wrapper: running run_atlas (--nthreads 9)
[2026-01-08 18:01:01] Arguments: --nthreads 9
[2026-01-08 18:01:01] Threads: 9
[2026-01-08 18:01:01] This job has been restarted, cleaning up previous attempt
[2026-01-08 18:01:02] Checking for CVMFS
[2026-01-08 18:01:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 18:01:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 18:01:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 18:01:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 18:01:05] 2.13.3.0 12257 92553 677856 154922 0 373 30560504 32935937 44181 16776704 0 631194034 99.726 425960387 23369 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 18:01:05] CVMFS is ok
[2026-01-08 18:01:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 18:01:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 18:01:05] Further information can be found at the LHC@home message board.
[2026-01-08 18:01:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 18:01:05] Checking for apptainer binary...
[2026-01-08 18:01:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 18:01:05] Running /usr/bin/apptainer --version
[2026-01-08 18:01:05] apptainer version 1.4.5-2.el9
[2026-01-08 18:01:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 18:01:06] c-1-3.aglt2.org
[2026-01-08 18:01:06] apptainer works
[2026-01-08 18:01:06] Set ATHENA_PROC_NUMBER=9
[2026-01-08 18:01:06] Set ATHENA_CORE_NUMBER=9
[2026-01-08 18:01:07] Starting ATLAS job with PandaID=6962918322
[2026-01-08 18:01:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 15:14:24]  *** The last 200 lines of the pilot log: ***
[2026-01-09 15:14:24] 2026-01-09 20:13:23,237 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 15:14:24] 2026-01-09 20:13:23,627 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 15:14:24] 2026-01-09 20:13:23,661 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 1768.3095374999994
[2026-01-09 15:14:24] 2026-01-09 20:13:23,688 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6962918322/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 15:14:24] 2026-01-09 20:13:23,689 | INFO     | extracted standard info from prmon json
[2026-01-09 15:14:24] 2026-01-09 20:13:23,689 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 15:14:24] 2026-01-09 20:13:23,690 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 15:14:24] 2026-01-09 20:13:23,690 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 15:14:24] 2026-01-09 20:13:23,690 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 15:14:24] 2026-01-09 20:13:23,732 | INFO     | fitting pss+swap vs Time
[2026-01-09 15:14:24] 2026-01-09 20:13:23,735 | INFO     | sum of square deviations: 599839848594.2792
[2026-01-09 15:14:24] 2026-01-09 20:13:23,793 | INFO     | sum of deviations: 721459472114.6566
[2026-01-09 15:14:24] 2026-01-09 20:13:23,793 | INFO     | mean x: 1767951520.1829855
[2026-01-09 15:14:24] 2026-01-09 20:13:23,793 | INFO     | mean y: 2537383.361155698
[2026-01-09 15:14:24] 2026-01-09 20:13:23,793 | INFO     | intersect: -2123872479.979301
[2026-01-09 15:14:24] 2026-01-09 20:13:23,796 | INFO     | chi2: 6.647350724627736
[2026-01-09 15:14:24] 2026-01-09 20:13:23,799 | INFO     | sum of square deviations: 592647908179.4373
[2026-01-09 15:14:24] 2026-01-09 20:13:23,949 | INFO     | sum of deviations: 1040769947442.213
[2026-01-09 15:14:24] 2026-01-09 20:13:23,949 | INFO     | mean x: 1767951367.6857374
[2026-01-09 15:14:24] 2026-01-09 20:13:23,949 | INFO     | mean y: 2544148.4697824335
[2026-01-09 15:14:24] 2026-01-09 20:13:23,949 | INFO     | intersect: -3102217762.6607018
[2026-01-09 15:14:24] 2026-01-09 20:13:23,952 | INFO     | chi2: 3.8615013640499303
[2026-01-09 15:14:24] 2026-01-09 20:13:23,952 | INFO     | current chi2=3.8615013640499303 (change=41.90916766669955 %)
[2026-01-09 15:14:24] 2026-01-09 20:13:23,954 | INFO     | sum of square deviations: 585513614198.4497
[2026-01-09 15:14:24] 2026-01-09 20:13:24,032 | INFO     | sum of deviations: 1033338153100.0979
[2026-01-09 15:14:24] 2026-01-09 20:13:24,032 | INFO     | mean x: 1767951215.1877022
[2026-01-09 15:14:24] 2026-01-09 20:13:24,032 | INFO     | mean y: 2543989.6116504855
[2026-01-09 15:14:24] 2026-01-09 20:13:24,032 | INFO     | intersect: -3117607957.622049
[2026-01-09 15:14:24] 2026-01-09 20:13:24,035 | INFO     | chi2: 3.8615346988900843
[2026-01-09 15:14:24] 2026-01-09 20:13:24,035 | INFO     | current chi2=3.8615346988900843 (change=-0.0008632611259532595 %)
[2026-01-09 15:14:24] 2026-01-09 20:13:24,035 | INFO     | right removable region: 1235
[2026-01-09 15:14:24] 2026-01-09 20:13:24,038 | INFO     | sum of square deviations: 592647389069.4385
[2026-01-09 15:14:24] 2026-01-09 20:13:24,087 | INFO     | sum of deviations: 353142632919.65015
[2026-01-09 15:14:24] 2026-01-09 20:13:24,087 | INFO     | mean x: 1767951672.6857374
[2026-01-09 15:14:24] 2026-01-09 20:13:24,087 | INFO     | mean y: 2545189.2401289283
[2026-01-09 15:14:24] 2026-01-09 20:13:24,088 | INFO     | intersect: -1050929642.644753
[2026-01-09 15:14:24] 2026-01-09 20:13:24,090 | INFO     | chi2: 3.607194273352549
[2026-01-09 15:14:24] 2026-01-09 20:13:24,091 | INFO     | current chi2=3.607194273352549 (change=45.73485855066631 %)
[2026-01-09 15:14:24] 2026-01-09 20:13:24,093 | INFO     | sum of square deviations: 585512727258.4489
[2026-01-09 15:14:24] 2026-01-09 20:13:24,140 | INFO     | sum of deviations: 205739226060.17404
[2026-01-09 15:14:24] 2026-01-09 20:13:24,141 | INFO     | mean x: 1767951825.1877022
[2026-01-09 15:14:24] 2026-01-09 20:13:24,141 | INFO     | mean y: 2548339.050970874
[2026-01-09 15:14:24] 2026-01-09 20:13:24,141 | INFO     | intersect: -618679899.5373155
[2026-01-09 15:14:24] 2026-01-09 20:13:24,144 | INFO     | chi2: 3.149526668349829
[2026-01-09 15:14:24] 2026-01-09 20:13:24,144 | INFO     | current chi2=3.149526668349829 (change=12.687633942636548 %)
[2026-01-09 15:14:24] 2026-01-09 20:13:24,144 | INFO     | left removable region: 20
[2026-01-09 15:14:24] 2026-01-09 20:13:24,146 | INFO     | sum of square deviations: 556173123235.3251
[2026-01-09 15:14:24] 2026-01-09 20:13:24,180 | INFO     | time since job start (76257s) is within the limit (174528.0s)
[2026-01-09 15:14:24] 2026-01-09 20:13:24,194 | INFO     | sum of deviations: 353875636359.37476
[2026-01-09 15:14:24] 2026-01-09 20:13:24,194 | INFO     | mean x: 1767951794.6954732
[2026-01-09 15:14:24] 2026-01-09 20:13:24,194 | INFO     | mean y: 2558682.3226337447
[2026-01-09 15:14:24] 2026-01-09 20:13:24,195 | INFO     | intersect: -1122333981.9635615
[2026-01-09 15:14:24] 2026-01-09 20:13:24,197 | INFO     | chi2: 0.05777876105694711
[2026-01-09 15:14:24] 2026-01-09 20:13:24,197 | INFO     | current memory leak: 0.64 B/s (using 1215 data points, chi2=0.06)
[2026-01-09 15:14:24] 2026-01-09 20:13:24,199 | INFO     | could have reported an average CPU frequency of 1740 MHz (44 samples)
[2026-01-09 15:14:24] 2026-01-09 20:13:24,199 | INFO     | ..............................
[2026-01-09 15:14:24] 2026-01-09 20:13:24,199 | INFO     | . Timing measurements:
[2026-01-09 15:14:24] 2026-01-09 20:13:24,200 | INFO     | . get job = 0 s
[2026-01-09 15:14:24] 2026-01-09 20:13:24,200 | INFO     | . initial setup = 4 s
[2026-01-09 15:14:24] 2026-01-09 20:13:24,200 | INFO     | . payload setup = 54 s
[2026-01-09 15:14:24] 2026-01-09 20:13:24,200 | INFO     | . stage-in = 0 s
[2026-01-09 15:14:24] 2026-01-09 20:13:24,200 | INFO     | . payload execution = 76048 s
[2026-01-09 15:14:24] 2026-01-09 20:13:24,200 | INFO     | . stage-out = 10 s
[2026-01-09 15:14:24] 2026-01-09 20:13:24,200 | INFO     | . log creation = 1 s
[2026-01-09 15:14:24] 2026-01-09 20:13:24,200 | INFO     | ..............................
[2026-01-09 15:14:24] 2026-01-09 20:13:24,760 | INFO     | 
[2026-01-09 15:14:24] 2026-01-09 20:13:24,760 | INFO     | job summary report
[2026-01-09 15:14:24] 2026-01-09 20:13:24,760 | INFO     | --------------------------------------------------
[2026-01-09 15:14:24] 2026-01-09 20:13:24,760 | INFO     | PanDA job id: 6962918322
[2026-01-09 15:14:24] 2026-01-09 20:13:24,760 | INFO     | task id: 47898826
[2026-01-09 15:14:24] 2026-01-09 20:13:24,761 | INFO     | errors: (none)
[2026-01-09 15:14:24] 2026-01-09 20:13:24,761 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 15:14:24] 2026-01-09 20:13:24,761 | INFO     | pilot state: finished 
[2026-01-09 15:14:24] 2026-01-09 20:13:24,761 | INFO     | transexitcode: 0
[2026-01-09 15:14:24] 2026-01-09 20:13:24,761 | INFO     | exeerrorcode: 0
[2026-01-09 15:14:24] 2026-01-09 20:13:24,761 | INFO     | exeerrordiag: 
[2026-01-09 15:14:24] 2026-01-09 20:13:24,761 | INFO     | exitcode: 0
[2026-01-09 15:14:24] 2026-01-09 20:13:24,761 | INFO     | exitmsg: OK
[2026-01-09 15:14:24] 2026-01-09 20:13:24,762 | INFO     | cpuconsumptiontime: 103215 s
[2026-01-09 15:14:24] 2026-01-09 20:13:24,762 | INFO     | nevents: 400
[2026-01-09 15:14:24] 2026-01-09 20:13:24,762 | INFO     | neventsw: 0
[2026-01-09 15:14:24] 2026-01-09 20:13:24,762 | INFO     | pid: 4141838
[2026-01-09 15:14:24] 2026-01-09 20:13:24,762 | INFO     | pgrp: 4141838
[2026-01-09 15:14:24] 2026-01-09 20:13:24,762 | INFO     | corecount: 9
[2026-01-09 15:14:24] 2026-01-09 20:13:24,762 | INFO     | event service: False
[2026-01-09 15:14:24] 2026-01-09 20:13:24,762 | INFO     | sizes: {0: 2283141, 1: 2283826, 2: 2283826, 3: 2284025, 4: 2284053, 5: 2284081, 16: 2284265, 27: 2284293, 39: 2284321, 44: 2284611, 51: 2284639, 76108: 2337385, 76
[2026-01-09 15:14:24] 2026-01-09 20:13:24,762 | INFO     | --------------------------------------------------
[2026-01-09 15:14:24] 2026-01-09 20:13:24,763 | INFO     | 
[2026-01-09 15:14:24] 2026-01-09 20:13:24,763 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 15:14:24] 2026-01-09 20:13:24,849 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,850 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,850 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,850 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,850 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,850 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,850 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,851 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,851 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,851 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,851 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,851 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,851 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,851 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,851 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,852 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,853 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,853 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 15:14:24] 2026-01-09 20:13:24,853 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,853 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 15:14:24] 2026-01-09 20:13:24,854 | INFO     | job 6962918322 has completed (purged errors)
[2026-01-09 15:14:24] 2026-01-09 20:13:24,854 | INFO     | overall cleanup function is called
[2026-01-09 15:14:24] 2026-01-09 20:13:25,871 | INFO     | --- collectZombieJob: --- 10, [4141838]
[2026-01-09 15:14:24] 2026-01-09 20:13:25,871 | INFO     | zombie collector waiting for pid 4141838
[2026-01-09 15:14:24] 2026-01-09 20:13:25,871 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 15:14:24] 2026-01-09 20:13:25,871 | INFO     | collected zombie processes
[2026-01-09 15:14:24] 2026-01-09 20:13:25,872 | INFO     | will attempt to kill all subprocesses of pid=4141838
[2026-01-09 15:14:24] 2026-01-09 20:13:31,204 | INFO     | process IDs to be killed: [4141838] (in reverse order)
[2026-01-09 15:14:24] 2026-01-09 20:13:35,437 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 15:14:24] 2026-01-09 20:13:35,438 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 15:14:24] 2026-01-09 20:13:35,913 | INFO     | did not find any defunct processes belonging to 4141838
[2026-01-09 15:14:24] 2026-01-09 20:13:36,167 | INFO     | did not find any defunct processes belonging to 4141838
[2026-01-09 15:14:24] 2026-01-09 20:13:36,167 | INFO     | ready for new job
[2026-01-09 15:14:24] 2026-01-09 20:13:36,167 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 15:14:24] 2026-01-09 20:13:36,185 | INFO     | ***************************************
[2026-01-09 15:14:24] 2026-01-09 20:13:36,185 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 15:14:24] 2026-01-09 20:13:36,186 | INFO     | ***************************************
[2026-01-09 15:14:24] 2026-01-09 20:13:36,186 | INFO     | 
[2026-01-09 15:14:24] 2026-01-09 20:13:36,202 | INFO     | architecture information:
[2026-01-09 15:14:24] 2026-01-09 20:13:36,206 | INFO     | executing command: cat /etc/os-release
[2026-01-09 15:14:24] 2026-01-09 20:13:36,300 | INFO     | cat /etc/os-release:
[2026-01-09 15:14:24] NAME="CentOS Linux"
[2026-01-09 15:14:24] VERSION="7 (Core)"
[2026-01-09 15:14:24] ID="centos"
[2026-01-09 15:14:24] ID_LIKE="rhel fedora"
[2026-01-09 15:14:24] VERSION_ID="7"
[2026-01-09 15:14:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 15:14:24] ANSI_COLOR="0;31"
[2026-01-09 15:14:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 15:14:24] HOME_URL="https://www.centos.org/"
[2026-01-09 15:14:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 15:14:24] 
[2026-01-09 15:14:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 15:14:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 15:14:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 15:14:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 15:14:24] 
[2026-01-09 15:14:24] 2026-01-09 20:13:36,301 | INFO     | ***************************************
[2026-01-09 15:14:24] 2026-01-09 20:13:36,822 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 15:14:24] 2026-01-09 20:13:36,867 | INFO     | sufficient remaining disk space (74087137280 B)
[2026-01-09 15:14:24] 2026-01-09 20:13:36,869 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 15:14:24] 2026-01-09 20:13:36,870 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 15:14:24] 2026-01-09 20:13:36,870 | INFO     | update_server=False
[2026-01-09 15:14:24] 2026-01-09 20:13:36,870 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 15:14:24] 2026-01-09 20:13:36,872 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 15:14:24] 2026-01-09 20:13:36,913 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 15:14:24] 2026-01-09 20:13:37,081 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:14:24] 2026-01-09 20:13:37,081 | INFO     | aborting loop
[2026-01-09 15:14:24] 2026-01-09 20:13:37,495 | INFO     | all data control threads have been joined
[2026-01-09 15:14:24] 2026-01-09 20:13:37,562 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:14:24] 2026-01-09 20:13:37,808 | INFO     | all job control threads have been joined
[2026-01-09 15:14:24] 2026-01-09 20:13:37,876 | INFO     | [job] retrieve thread has finished
[2026-01-09 15:14:24] 2026-01-09 20:13:37,925 | INFO     | all payload control threads have been joined
[2026-01-09 15:14:24] 2026-01-09 20:13:37,936 | INFO     | [payload] failed_post thread has finished
[2026-01-09 15:14:24] 2026-01-09 20:13:37,952 | INFO     | [payload] validate_post thread has finished
[2026-01-09 15:14:24] 2026-01-09 20:13:38,094 | INFO     | [job] job monitor thread has finished
[2026-01-09 15:14:24] 2026-01-09 20:13:38,504 | INFO     | [data] control thread has finished
[2026-01-09 15:14:24] 2026-01-09 20:13:38,566 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 15:14:24] 2026-01-09 20:13:38,595 | INFO     | [job] queue monitor thread has finished
[2026-01-09 15:14:24] 2026-01-09 20:13:38,681 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 15:14:24] 2026-01-09 20:13:38,682 | INFO     | [data] copytool_in thread has finished
[2026-01-09 15:14:24] 2026-01-09 20:13:38,682 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 15:14:24] 2026-01-09 20:13:38,814 | INFO     | [job] control thread has finished
[2026-01-09 15:14:24] 2026-01-09 20:13:38,919 | INFO     | [data] copytool_out thread has finished
[2026-01-09 15:14:24] 2026-01-09 20:13:38,934 | INFO     | [payload] control thread has finished
[2026-01-09 15:14:24] 2026-01-09 20:13:39,023 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 15:14:24] 2026-01-09 20:13:39,146 | INFO     | [job] validate thread has finished
[2026-01-09 15:14:24] 2026-01-09 20:13:40,900 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 15:14:24] 2026-01-09 20:14:07,623 | INFO     | PID=4112166 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 15:14:24] 2026-01-09 20:14:07,623 | INFO     | .. there are 78 such processes running
[2026-01-09 15:14:24] 2026-01-09 20:14:07,624 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 15:14:24] 2026-01-09 20:14:07,624 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 15:14:24] 2026-01-09 20:14:07,625 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 15:14:24] 2026-01-09 20:14:14,968 | INFO     | [monitor] cgroup control has ended
[2026-01-09 15:14:24] 2026-01-09 20:14:16,515 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140519056877376)>', '<ExcThread(monitor, started 140518545667840)>']
[2026-01-09 15:14:24] 2026-01-09 20:14:16,705 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 15:14:24] 2026-01-09 20:14:16,705 | INFO     | [monitor] control thread has ended
[2026-01-09 15:14:24] 2026-01-09 20:14:21,553 | INFO     | all workflow threads have been joined
[2026-01-09 15:14:24] 2026-01-09 20:14:21,553 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 15:14:24] 2026-01-09 20:14:21,554 | INFO     | traces error code: 0
[2026-01-09 15:14:24] 2026-01-09 20:14:21,554 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 15:14:24] 2026-01-09 20:14:22,428 [wrapper] ==== pilot stdout END ====
[2026-01-09 15:14:24] 2026-01-09 20:14:22,453 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 15:14:24] 2026-01-09 20:14:22,509 [wrapper] pilotpid: 4112166
[2026-01-09 15:14:24] 2026-01-09 20:14:22,536 [wrapper] Pilot exit status: 0
[2026-01-09 15:14:24] 2026-01-09 20:14:22,655 [wrapper] pandaids: 6962918322 6962918322
[2026-01-09 15:14:24] 2026-01-09 20:14:23,883 [wrapper] cleanup supervisor_pilot 1262852 4112167
[2026-01-09 15:14:24] 2026-01-09 20:14:23,919 [wrapper] Test setup, not cleaning
[2026-01-09 15:14:24] 2026-01-09 20:14:23,974 [wrapper] apfmon messages muted
[2026-01-09 15:14:24] 2026-01-09 20:14:24,000 [wrapper] ==== wrapper stdout END ====
[2026-01-09 15:14:24] 2026-01-09 20:14:24,045 [wrapper] ==== wrapper stderr END ====
[2026-01-09 15:14:24]  *** Error codes and diagnostics ***
[2026-01-09 15:14:24]     "exeErrorCode": 0,
[2026-01-09 15:14:24]     "exeErrorDiag": "",
[2026-01-09 15:14:24]     "pilotErrorCode": 0,
[2026-01-09 15:14:24]     "pilotErrorDiag": "",
[2026-01-09 15:14:24]  *** Listing of results directory ***
[2026-01-09 15:14:24] total 677608
[2026-01-09 15:14:24] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 15:14:24] -rwx------. 1 boincer umatlas     36322 Jan  8 03:06 runpilot2-wrapper.sh
[2026-01-09 15:14:24] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:11 queuedata.json
[2026-01-09 15:14:24] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 03:11 pilot3.tar.gz
[2026-01-09 15:14:24] -rw-r--r--. 1 boincer umatlas       100 Jan  8 12:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 15:14:24] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 12:52 run_atlas
[2026-01-09 15:14:24] -rw-r--r--. 1 boincer umatlas       105 Jan  8 12:52 job.xml
[2026-01-09 15:14:24] -rw-r--r--. 3 boincer umatlas 226667774 Jan  8 12:52 EVNT.47898824._000791.pool.root.1
[2026-01-09 15:14:24] -rw-r--r--. 3 boincer umatlas 226667774 Jan  8 12:52 ATLAS.root_0
[2026-01-09 15:14:24] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 12:52 start_atlas.sh
[2026-01-09 15:14:24] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 12:52 shared
[2026-01-09 15:14:24] -rw-r--r--. 2 boincer umatlas    592410 Jan  8 12:52 input.tar.gz
[2026-01-09 15:14:24] -rw-r--r--. 1 boincer umatlas         0 Jan  8 12:52 boinc_lockfile
[2026-01-09 15:14:24] -rw-r--r--. 1 boincer umatlas      2519 Jan  8 18:01 pandaJob.out
[2026-01-09 15:14:24] -rw-------. 1 boincer umatlas        57 Jan  8 18:01 setup.sh.local
[2026-01-09 15:14:24] -rw-------. 1 boincer umatlas    989837 Jan  8 18:02 agis_schedconf.cvmfs.json
[2026-01-09 15:14:24] -rw-------. 1 boincer umatlas 222203709 Jan  9 15:07 HITS.47898826._020393.pool.root.1
[2026-01-09 15:14:24] -rw-r--r--. 1 boincer umatlas       532 Jan  9 15:08 boinc_task_state.xml
[2026-01-09 15:14:24] -rw-r--r--. 1 boincer umatlas      6841 Jan  9 15:09 init_data.xml
[2026-01-09 15:14:24] -rw-------. 1 boincer umatlas      1045 Jan  9 15:12 memory_monitor_summary.json
[2026-01-09 15:14:24] -rw-------. 1 boincer umatlas   1516240 Jan  9 15:12 agis_ddmendpoints.agis.ALL.json
[2026-01-09 15:14:24] -rw-------. 1 boincer umatlas   1030012 Jan  9 15:12 log.47898826._020393.job.log.tgz.1
[2026-01-09 15:14:24] -rw-------. 1 boincer umatlas      7827 Jan  9 15:13 heartbeat.json
[2026-01-09 15:14:24] -rw-------. 1 boincer umatlas        96 Jan  9 15:14 pilot_heartbeat.json
[2026-01-09 15:14:24] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 15:14 boinc_mmap_file
[2026-01-09 15:14:24] -rw-r--r--. 1 boincer umatlas        29 Jan  9 15:14 wrapper_checkpoint.txt
[2026-01-09 15:14:24] -rw-------. 1 boincer umatlas      4824 Jan  9 15:14 pilotlog.txt
[2026-01-09 15:14:24] -rw-------. 1 boincer umatlas   6178424 Jan  9 15:14 log.47898826._020393.job.log.1
[2026-01-09 15:14:24] -rw-------. 1 boincer umatlas       357 Jan  9 15:14 output.list
[2026-01-09 15:14:24] -rw-r--r--. 1 boincer umatlas       620 Jan  9 15:14 runtime_log
[2026-01-09 15:14:24] -rw-------. 1 boincer umatlas   7229440 Jan  9 15:14 result.tar.gz
[2026-01-09 15:14:24] -rw-r--r--. 1 boincer umatlas      9413 Jan  9 15:14 runtime_log.err
[2026-01-09 15:14:24] -rw-------. 1 boincer umatlas       781 Jan  9 15:14 FGfNDmYD0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEfeKDmzyciWm.diag
[2026-01-09 15:14:24] -rw-r--r--. 1 boincer umatlas     23532 Jan  9 15:14 stderr.txt
[2026-01-09 15:14:25] HITS file was successfully produced:
[2026-01-09 15:14:25] -rw-------. 1 boincer umatlas 222203709 Jan  9 15:07 shared/HITS.pool.root.1
[2026-01-09 15:14:25]  *** Contents of shared directory: ***
[2026-01-09 15:14:25] total 446012
[2026-01-09 15:14:25] -rw-r--r--. 3 boincer umatlas 226667774 Jan  8 12:52 ATLAS.root_0
[2026-01-09 15:14:25] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 12:52 start_atlas.sh
[2026-01-09 15:14:25] -rw-r--r--. 2 boincer umatlas    592410 Jan  8 12:52 input.tar.gz
[2026-01-09 15:14:25] -rw-------. 1 boincer umatlas 222203709 Jan  9 15:07 HITS.pool.root.1
[2026-01-09 15:14:25] -rw-------. 1 boincer umatlas   7229440 Jan  9 15:14 result.tar.gz
15:14:26 (4094705): run_atlas exited; CPU time 108614.932383
15:14:26 (4094705): called boinc_finish(0)

</stderr_txt>
]]>

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