Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:37:46 (368414): wrapper (7.7.26015): starting
12:37:46 (368414): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 12:37:46] Arguments: --nthreads 8
[2026-01-08 12:37:46] Threads: 8
[2026-01-08 12:37:46] Checking for CVMFS
[2026-01-08 12:37:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 12:37:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 12:37:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 12:37:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 12:37:48] 2.13.3.0 9438 92257 192456 154915 2 734 25553890 40960000 23953 16776704 0 1207793195 99.737 857057734 48005 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 12:37:48] CVMFS is ok
[2026-01-08 12:37:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 12:37:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 12:37:48] Further information can be found at the LHC@home message board.
[2026-01-08 12:37:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 12:37:48] Checking for apptainer binary...
[2026-01-08 12:37:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 12:37:48] Running /usr/bin/apptainer --version
[2026-01-08 12:37:48] apptainer version 1.4.5-2.el9
[2026-01-08 12:37:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 12:37:49] c8-7-3.aglt2.org
[2026-01-08 12:37:49] apptainer works
[2026-01-08 12:37:49] Set ATHENA_PROC_NUMBER=8
[2026-01-08 12:37:49] Set ATHENA_CORE_NUMBER=8
[2026-01-08 12:37:49] Starting ATLAS job with PandaID=6962917286
[2026-01-08 12:37:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 16:03:27]  *** The last 200 lines of the pilot log: ***
[2026-01-08 16:03:27] 2026-01-08 21:02:28,673 | INFO     | monitor loop #829: job 0:6962917286 is in state 'finished'
[2026-01-08 16:03:27] 2026-01-08 21:02:28,673 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 16:03:27] 2026-01-08 21:02:30,505 | INFO     | time since job start (12211s) is within the limit (174528.0s)
[2026-01-08 16:03:27] 2026-01-08 21:02:31,180 | INFO     | monitor loop #830: job 0:6962917286 is in state 'finished'
[2026-01-08 16:03:27] 2026-01-08 21:02:31,180 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 16:03:27] 2026-01-08 21:02:32,512 | INFO     | time since job start (12213s) is within the limit (174528.0s)
[2026-01-08 16:03:27] 2026-01-08 21:02:33,685 | INFO     | monitor loop #831: job 0:6962917286 is in state 'finished'
[2026-01-08 16:03:27] 2026-01-08 21:02:33,685 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 16:03:27] 2026-01-08 21:02:34,519 | INFO     | time since job start (12215s) is within the limit (174528.0s)
[2026-01-08 16:03:27] 2026-01-08 21:02:36,099 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-08 16:03:27] 2026-01-08 21:02:36,108 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.8069375
[2026-01-08 16:03:27] 2026-01-08 21:02:36,132 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6962917286/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 16:03:27] 2026-01-08 21:02:36,132 | INFO     | extracted standard info from prmon json
[2026-01-08 16:03:27] 2026-01-08 21:02:36,133 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 16:03:27] 2026-01-08 21:02:36,133 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 16:03:27] 2026-01-08 21:02:36,141 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 16:03:27] 2026-01-08 21:02:36,141 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 16:03:27] 2026-01-08 21:02:36,147 | INFO     | fitting pss+swap vs Time
[2026-01-08 16:03:27] 2026-01-08 21:02:36,147 | INFO     | sum of square deviations: 2406966180.085862
[2026-01-08 16:03:27] 2026-01-08 21:02:36,147 | INFO     | sum of deviations: 21881187809.76264
[2026-01-08 16:03:27] 2026-01-08 21:02:36,147 | INFO     | mean x: 1767900088.631313
[2026-01-08 16:03:27] 2026-01-08 21:02:36,147 | INFO     | mean y: 2466066.48989899
[2026-01-08 16:03:27] 2026-01-08 21:02:36,147 | INFO     | intersect: -16069115739.806126
[2026-01-08 16:03:27] 2026-01-08 21:02:36,148 | INFO     | chi2: 2.9072019221304823
[2026-01-08 16:03:27] 2026-01-08 21:02:36,148 | INFO     | sum of square deviations: 2229194032.4974146
[2026-01-08 16:03:27] 2026-01-08 21:02:36,148 | INFO     | sum of deviations: 33776380970.34198
[2026-01-08 16:03:27] 2026-01-08 21:02:36,148 | INFO     | mean x: 1767899936.134715
[2026-01-08 16:03:27] 2026-01-08 21:02:36,148 | INFO     | mean y: 2476049.2176165804
[2026-01-08 16:03:27] 2026-01-08 21:02:36,148 | INFO     | intersect: -26784452719.576603
[2026-01-08 16:03:27] 2026-01-08 21:02:36,152 | INFO     | chi2: 2.20442644150865
[2026-01-08 16:03:27] 2026-01-08 21:02:36,152 | INFO     | current chi2=2.20442644150865 (change=24.17360401670408 %)
[2026-01-08 16:03:27] 2026-01-08 21:02:36,152 | INFO     | right removable region: 192
[2026-01-08 16:03:27] 2026-01-08 21:02:36,152 | INFO     | sum of square deviations: 2229178172.4974146
[2026-01-08 16:03:27] 2026-01-08 21:02:36,153 | INFO     | sum of deviations: -19602137886.139896
[2026-01-08 16:03:27] 2026-01-08 21:02:36,153 | INFO     | mean x: 1767900241.134715
[2026-01-08 16:03:27] 2026-01-08 21:02:36,153 | INFO     | mean y: 2501362.274611399
[2026-01-08 16:03:27] 2026-01-08 21:02:36,153 | INFO     | intersect: 15548420806.137661
[2026-01-08 16:03:27] 2026-01-08 21:02:36,153 | INFO     | chi2: 0.758265734458004
[2026-01-08 16:03:27] 2026-01-08 21:02:36,153 | INFO     | current chi2=0.758265734458004 (change=73.91767910285624 %)
[2026-01-08 16:03:27] 2026-01-08 21:02:36,153 | INFO     | sum of square deviations: 2060367077.4042509
[2026-01-08 16:03:27] 2026-01-08 21:02:36,154 | INFO     | sum of deviations: -18811782780.638298
[2026-01-08 16:03:27] 2026-01-08 21:02:36,154 | INFO     | mean x: 1767900393.6382978
[2026-01-08 16:03:27] 2026-01-08 21:02:36,154 | INFO     | mean y: 2500612.505319149
[2026-01-08 16:03:27] 2026-01-08 21:02:36,154 | INFO     | intersect: 16143972948.991987
[2026-01-08 16:03:27] 2026-01-08 21:02:36,154 | INFO     | chi2: 0.7482611985896099
[2026-01-08 16:03:27] 2026-01-08 21:02:36,154 | INFO     | current chi2=0.7482611985896099 (change=1.319397068040427 %)
[2026-01-08 16:03:27] 2026-01-08 21:02:36,154 | INFO     | left removable region: 20
[2026-01-08 16:03:27] 2026-01-08 21:02:36,154 | INFO     | sum of square deviations: 1577806569.0697625
[2026-01-08 16:03:27] 2026-01-08 21:02:36,154 | INFO     | sum of deviations: -3437521091.3255825
[2026-01-08 16:03:27] 2026-01-08 21:02:36,154 | INFO     | mean x: 1767900515.6511629
[2026-01-08 16:03:27] 2026-01-08 21:02:36,155 | INFO     | mean y: 2508922.8779069767
[2026-01-08 16:03:27] 2026-01-08 21:02:36,155 | INFO     | intersect: 3854182143.822358
[2026-01-08 16:03:27] 2026-01-08 21:02:36,155 | INFO     | chi2: 0.01243123673333893
[2026-01-08 16:03:27] 2026-01-08 21:02:36,155 | INFO     | current memory leak: -2.18 B/s (using 172 data points, chi2=0.01)
[2026-01-08 16:03:27] 2026-01-08 21:02:36,155 | INFO     | could have reported an average CPU frequency of 3799 MHz (10 samples)
[2026-01-08 16:03:27] 2026-01-08 21:02:36,155 | INFO     | ..............................
[2026-01-08 16:03:27] 2026-01-08 21:02:36,155 | INFO     | . Timing measurements:
[2026-01-08 16:03:27] 2026-01-08 21:02:36,155 | INFO     | . get job = 0 s
[2026-01-08 16:03:27] 2026-01-08 21:02:36,155 | INFO     | . initial setup = 4 s
[2026-01-08 16:03:27] 2026-01-08 21:02:36,155 | INFO     | . payload setup = 40 s
[2026-01-08 16:03:27] 2026-01-08 21:02:36,155 | INFO     | . stage-in = 0 s
[2026-01-08 16:03:27] 2026-01-08 21:02:36,155 | INFO     | . payload execution = 12077 s
[2026-01-08 16:03:27] 2026-01-08 21:02:36,155 | INFO     | . stage-out = 3 s
[2026-01-08 16:03:27] 2026-01-08 21:02:36,155 | INFO     | . log creation = 0 s
[2026-01-08 16:03:27] 2026-01-08 21:02:36,155 | INFO     | ..............................
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | 
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | job summary report
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | --------------------------------------------------
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | PanDA job id: 6962917286
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | task id: 47898826
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | errors: (none)
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | pilot state: finished 
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | transexitcode: 0
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | exeerrorcode: 0
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | exeerrordiag: 
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | exitcode: 0
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | exitmsg: OK
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | cpuconsumptiontime: 31882 s
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | nevents: 400
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | neventsw: 0
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | pid: 413059
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | pgrp: 413059
[2026-01-08 16:03:27] 2026-01-08 21:02:36,298 | INFO     | corecount: 8
[2026-01-08 16:03:27] 2026-01-08 21:02:36,299 | INFO     | event service: False
[2026-01-08 16:03:27] 2026-01-08 21:02:36,299 | INFO     | sizes: {0: 2283798, 1: 2283997, 12: 2283997, 23: 2284025, 29: 2284315, 33: 2284343, 12121: 2314474, 12122: 2314473, 12127: 2323583, 12152: 2323721}
[2026-01-08 16:03:27] 2026-01-08 21:02:36,299 | INFO     | --------------------------------------------------
[2026-01-08 16:03:27] 2026-01-08 21:02:36,299 | INFO     | 
[2026-01-08 16:03:27] 2026-01-08 21:02:36,299 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-08 16:03:27] 2026-01-08 21:02:36,343 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,343 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,343 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,343 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,343 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,343 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,343 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,343 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,343 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,343 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,343 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,343 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,343 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,344 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,344 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,344 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,344 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,344 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 16:03:27] 2026-01-08 21:02:36,344 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,344 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 16:03:27] 2026-01-08 21:02:36,344 | INFO     | job 6962917286 has completed (purged errors)
[2026-01-08 16:03:27] 2026-01-08 21:02:36,344 | INFO     | overall cleanup function is called
[2026-01-08 16:03:27] 2026-01-08 21:02:37,359 | INFO     | --- collectZombieJob: --- 10, [413059]
[2026-01-08 16:03:27] 2026-01-08 21:02:37,359 | INFO     | zombie collector waiting for pid 413059
[2026-01-08 16:03:27] 2026-01-08 21:02:37,359 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 16:03:27] 2026-01-08 21:02:37,359 | INFO     | collected zombie processes
[2026-01-08 16:03:27] 2026-01-08 21:02:37,359 | INFO     | will attempt to kill all subprocesses of pid=413059
[2026-01-08 16:03:27] 2026-01-08 21:02:38,151 | INFO     | process IDs to be killed: [413059] (in reverse order)
[2026-01-08 16:03:27] 2026-01-08 21:02:38,603 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 16:03:27] 2026-01-08 21:02:38,603 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 16:03:27] 2026-01-08 21:02:38,638 | INFO     | did not find any defunct processes belonging to 413059
[2026-01-08 16:03:27] 2026-01-08 21:02:38,656 | INFO     | did not find any defunct processes belonging to 413059
[2026-01-08 16:03:27] 2026-01-08 21:02:38,656 | INFO     | ready for new job
[2026-01-08 16:03:27] 2026-01-08 21:02:38,656 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 16:03:27] 2026-01-08 21:02:38,658 | INFO     | ***************************************
[2026-01-08 16:03:27] 2026-01-08 21:02:38,658 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 16:03:27] 2026-01-08 21:02:38,658 | INFO     | ***************************************
[2026-01-08 16:03:27] 2026-01-08 21:02:38,658 | INFO     | 
[2026-01-08 16:03:27] 2026-01-08 21:02:38,662 | INFO     | architecture information:
[2026-01-08 16:03:27] 2026-01-08 21:02:38,662 | INFO     | executing command: cat /etc/os-release
[2026-01-08 16:03:27] 2026-01-08 21:02:38,731 | INFO     | cat /etc/os-release:
[2026-01-08 16:03:27] NAME="CentOS Linux"
[2026-01-08 16:03:27] VERSION="7 (Core)"
[2026-01-08 16:03:27] ID="centos"
[2026-01-08 16:03:27] ID_LIKE="rhel fedora"
[2026-01-08 16:03:27] VERSION_ID="7"
[2026-01-08 16:03:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 16:03:27] ANSI_COLOR="0;31"
[2026-01-08 16:03:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 16:03:27] HOME_URL="https://www.centos.org/"
[2026-01-08 16:03:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 16:03:27] 
[2026-01-08 16:03:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 16:03:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 16:03:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 16:03:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 16:03:27] 
[2026-01-08 16:03:27] 2026-01-08 21:02:38,731 | INFO     | ***************************************
[2026-01-08 16:03:27] 2026-01-08 21:02:39,235 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-08 16:03:27] 2026-01-08 21:02:39,328 | INFO     | sufficient remaining disk space (169742434304 B)
[2026-01-08 16:03:27] 2026-01-08 21:02:39,328 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 16:03:27] 2026-01-08 21:02:39,328 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 16:03:27] 2026-01-08 21:02:39,328 | INFO     | update_server=False
[2026-01-08 16:03:27] 2026-01-08 21:02:39,329 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 16:03:27] 2026-01-08 21:02:39,330 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 16:03:27] 2026-01-08 21:02:39,337 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 16:03:27] 2026-01-08 21:02:39,543 | INFO     | all payload control threads have been joined
[2026-01-08 16:03:27] 2026-01-08 21:02:39,705 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 16:03:27] 2026-01-08 21:02:39,705 | INFO     | aborting loop
[2026-01-08 16:03:27] 2026-01-08 21:02:39,736 | INFO     | all data control threads have been joined
[2026-01-08 16:03:27] 2026-01-08 21:02:40,334 | INFO     | [job] retrieve thread has finished
[2026-01-08 16:03:27] 2026-01-08 21:02:40,414 | INFO     | [payload] validate_post thread has finished
[2026-01-08 16:03:27] 2026-01-08 21:02:40,551 | INFO     | [payload] control thread has finished
[2026-01-08 16:03:27] 2026-01-08 21:02:40,710 | INFO     | [job] job monitor thread has finished
[2026-01-08 16:03:27] 2026-01-08 21:02:40,742 | INFO     | [data] control thread has finished
[2026-01-08 16:03:27] 2026-01-08 21:02:40,880 | INFO     | [payload] failed_post thread has finished
[2026-01-08 16:03:27] 2026-01-08 21:02:40,953 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 16:03:27] 2026-01-08 21:02:41,048 | INFO     | all job control threads have been joined
[2026-01-08 16:03:27] 2026-01-08 21:02:41,273 | INFO     | [data] copytool_in thread has finished
[2026-01-08 16:03:27] 2026-01-08 21:02:41,315 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 16:03:27] 2026-01-08 21:02:41,344 | INFO     | [data] copytool_out thread has finished
[2026-01-08 16:03:27] 2026-01-08 21:02:41,349 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 16:03:27] 2026-01-08 21:02:41,367 | INFO     | [job] validate thread has finished
[2026-01-08 16:03:27] 2026-01-08 21:02:41,368 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 16:03:27] 2026-01-08 21:02:41,568 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 16:03:27] 2026-01-08 21:02:42,054 | INFO     | [job] control thread has finished
[2026-01-08 16:03:27] 2026-01-08 21:02:42,321 | INFO     | [job] queue monitor thread has finished
[2026-01-08 16:03:27] 2026-01-08 21:02:43,339 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 16:03:27] 2026-01-08 21:03:08,203 | INFO     | PID=392036 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-08 16:03:27] 2026-01-08 21:03:08,203 | INFO     | .. there are 30 such processes running
[2026-01-08 16:03:27] 2026-01-08 21:03:08,204 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 16:03:27] 2026-01-08 21:03:08,204 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 16:03:27] 2026-01-08 21:03:08,204 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 16:03:27] 2026-01-08 21:03:19,496 | INFO     | [monitor] cgroup control has ended
[2026-01-08 16:03:27] 2026-01-08 21:03:20,818 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140594422044480)>', '<ExcThread(monitor, started 140593892136704)>']
[2026-01-08 16:03:27] 2026-01-08 21:03:21,289 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 16:03:27] 2026-01-08 21:03:21,289 | INFO     | [monitor] control thread has ended
[2026-01-08 16:03:27] 2026-01-08 21:03:25,844 | INFO     | all workflow threads have been joined
[2026-01-08 16:03:27] 2026-01-08 21:03:25,846 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 16:03:27] 2026-01-08 21:03:25,846 | INFO     | traces error code: 0
[2026-01-08 16:03:27] 2026-01-08 21:03:25,846 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 16:03:27] 2026-01-08 21:03:26,193 [wrapper] ==== pilot stdout END ====
[2026-01-08 16:03:27] 2026-01-08 21:03:26,221 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 16:03:27] 2026-01-08 21:03:26,243 [wrapper] pilotpid: 392036
[2026-01-08 16:03:27] 2026-01-08 21:03:26,290 [wrapper] Pilot exit status: 0
[2026-01-08 16:03:27] 2026-01-08 21:03:26,370 [wrapper] pandaids: 6962917286
[2026-01-08 16:03:27] 2026-01-08 21:03:26,555 [wrapper] cleanup supervisor_pilot 1586243 392037
[2026-01-08 16:03:27] 2026-01-08 21:03:26,575 [wrapper] Test setup, not cleaning
[2026-01-08 16:03:27] 2026-01-08 21:03:26,600 [wrapper] apfmon messages muted
[2026-01-08 16:03:27] 2026-01-08 21:03:26,652 [wrapper] ==== wrapper stdout END ====
[2026-01-08 16:03:27] 2026-01-08 21:03:26,685 [wrapper] ==== wrapper stderr END ====
[2026-01-08 16:03:27]  *** Error codes and diagnostics ***
[2026-01-08 16:03:27]     "exeErrorCode": 0,
[2026-01-08 16:03:27]     "exeErrorDiag": "",
[2026-01-08 16:03:27]     "pilotErrorCode": 0,
[2026-01-08 16:03:27]     "pilotErrorDiag": "",
[2026-01-08 16:03:27]  *** Listing of results directory ***
[2026-01-08 16:03:27] total 439784
[2026-01-08 16:03:27] -rwx------. 1 boincer umatlas     36322 Jan  8 03:06 runpilot2-wrapper.sh
[2026-01-08 16:03:27] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 03:10 pilot3.tar.gz
[2026-01-08 16:03:27] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:10 queuedata.json
[2026-01-08 16:03:27] -rw-r--r--. 1 boincer umatlas       100 Jan  8 12:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 16:03:27] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 12:37 run_atlas
[2026-01-08 16:03:27] -rw-r--r--. 1 boincer umatlas       105 Jan  8 12:37 job.xml
[2026-01-08 16:03:27] -rw-r--r--. 2 boincer umatlas 224138198 Jan  8 12:37 EVNT.47898824._000642.pool.root.1
[2026-01-08 16:03:27] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 12:37 start_atlas.sh
[2026-01-08 16:03:27] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 12:37 shared
[2026-01-08 16:03:27] -rw-r--r--. 2 boincer umatlas    592402 Jan  8 12:37 input.tar.gz
[2026-01-08 16:03:27] -rw-r--r--. 1 boincer umatlas         0 Jan  8 12:37 boinc_lockfile
[2026-01-08 16:03:27] -rw-r--r--. 1 boincer umatlas      2519 Jan  8 12:37 pandaJob.out
[2026-01-08 16:03:27] -rw-------. 1 boincer umatlas        57 Jan  8 12:37 setup.sh.local
[2026-01-08 16:03:27] -rw-------. 1 boincer umatlas    989837 Jan  8 12:38 agis_schedconf.cvmfs.json
[2026-01-08 16:03:27] drwx------. 5 boincer umatlas      4096 Jan  8 12:38 pilot3
[2026-01-08 16:03:27] -rw-------. 1 boincer umatlas 218123703 Jan  8 16:00 HITS.47898826._019486.pool.root.1
[2026-01-08 16:03:27] -rw-r--r--. 1 boincer umatlas       530 Jan  8 16:01 boinc_task_state.xml
[2026-01-08 16:03:27] -rw-r--r--. 1 boincer umatlas      7171 Jan  8 16:01 init_data.xml
[2026-01-08 16:03:27] -rw-------. 1 boincer umatlas      1062 Jan  8 16:02 memory_monitor_summary.json
[2026-01-08 16:03:27] -rw-------. 1 boincer umatlas   1516240 Jan  8 16:02 agis_ddmendpoints.agis.ALL.json
[2026-01-08 16:03:27] -rw-------. 1 boincer umatlas    432936 Jan  8 16:02 log.47898826._019486.job.log.tgz.1
[2026-01-08 16:03:27] -rw-------. 1 boincer umatlas      7800 Jan  8 16:02 heartbeat.json
[2026-01-08 16:03:27] -rw-------. 1 boincer umatlas        95 Jan  8 16:03 pilot_heartbeat.json
[2026-01-08 16:03:27] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 16:03 boinc_mmap_file
[2026-01-08 16:03:27] -rw-r--r--. 1 boincer umatlas        28 Jan  8 16:03 wrapper_checkpoint.txt
[2026-01-08 16:03:27] -rw-------. 1 boincer umatlas      4824 Jan  8 16:03 pilotlog.txt
[2026-01-08 16:03:27] -rw-------. 1 boincer umatlas   1648798 Jan  8 16:03 log.47898826._019486.job.log.1
[2026-01-08 16:03:27] -rw-------. 1 boincer umatlas       357 Jan  8 16:03 output.list
[2026-01-08 16:03:27] -rw-r--r--. 1 boincer umatlas       620 Jan  8 16:03 runtime_log
[2026-01-08 16:03:27] -rw-------. 1 boincer umatlas   2099200 Jan  8 16:03 result.tar.gz
[2026-01-08 16:03:27] -rw-r--r--. 1 boincer umatlas      9333 Jan  8 16:03 runtime_log.err
[2026-01-08 16:03:27] -rw-------. 1 boincer umatlas       658 Jan  8 16:03 4u4MDmBD0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbceKDmVLTxXo.diag
[2026-01-08 16:03:27] -rw-r--r--. 1 boincer umatlas     21420 Jan  8 16:03 stderr.txt
[2026-01-08 16:03:27] HITS file was successfully produced:
[2026-01-08 16:03:27] -rw-------. 1 boincer umatlas 218123703 Jan  8 16:00 shared/HITS.pool.root.1
[2026-01-08 16:03:27]  *** Contents of shared directory: ***
[2026-01-08 16:03:27] total 434552
[2026-01-08 16:03:27] -rw-r--r--. 2 boincer umatlas 224138198 Jan  8 12:37 ATLAS.root_0
[2026-01-08 16:03:27] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 12:37 start_atlas.sh
[2026-01-08 16:03:27] -rw-r--r--. 2 boincer umatlas    592402 Jan  8 12:37 input.tar.gz
[2026-01-08 16:03:27] -rw-------. 1 boincer umatlas 218123703 Jan  8 16:00 HITS.pool.root.1
[2026-01-08 16:03:27] -rw-------. 1 boincer umatlas   2099200 Jan  8 16:03 result.tar.gz
16:03:28 (368414): run_atlas exited; CPU time 32249.311828
16:03:28 (368414): called boinc_finish(0)

</stderr_txt>
]]>

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