Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:12:46 (3467631): wrapper (7.7.26015): starting
03:12:46 (3467631): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 03:12:46] Arguments: --nthreads 3
[2026-01-09 03:12:46] Threads: 3
[2026-01-09 03:12:46] Checking for CVMFS
[2026-01-09 03:12:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 03:12:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 03:12:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 03:12:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 03:12:47] 2.9.2.0 3098039 1544 74508 154926 2 57 20112060 36864000 0 130560 0 941905 99.987 57780 18169 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 03:12:47] CVMFS is ok
[2026-01-09 03:12:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 03:12:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 03:12:47] Further information can be found at the LHC@home message board.
[2026-01-09 03:12:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 03:12:47] Checking for apptainer binary...
[2026-01-09 03:12:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 03:12:47] Running /usr/bin/apptainer --version
[2026-01-09 03:12:47] apptainer version 1.4.1-1.1
[2026-01-09 03:12:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 03:12:47] atlasA223b
[2026-01-09 03:12:47] apptainer works
[2026-01-09 03:12:47] Set ATHENA_PROC_NUMBER=3
[2026-01-09 03:12:47] Set ATHENA_CORE_NUMBER=3
[2026-01-09 03:12:47] Starting ATLAS job with PandaID=6962922578
[2026-01-09 03:12:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 05:13:21]  *** The last 200 lines of the pilot log: ***
[2026-01-09 05:13:21] 2026-01-09 04:12:50,393 | INFO     | process IDs to be killed: [3477805] (in reverse order)
[2026-01-09 05:13:21] 2026-01-09 04:12:50,423 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 05:13:21] 2026-01-09 04:12:50,423 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 05:13:21] 2026-01-09 04:12:50,425 | INFO     | did not find any defunct processes belonging to 3477805
[2026-01-09 05:13:21] 2026-01-09 04:12:50,426 | INFO     | did not find any defunct processes belonging to 3477805
[2026-01-09 05:13:21] 2026-01-09 04:12:50,426 | INFO     | ready for new job
[2026-01-09 05:13:21] 2026-01-09 04:12:50,426 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 05:13:21] 2026-01-09 04:12:50,427 | INFO     | ***************************************
[2026-01-09 05:13:21] 2026-01-09 04:12:50,427 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 05:13:21] 2026-01-09 04:12:50,427 | INFO     | ***************************************
[2026-01-09 05:13:21] 2026-01-09 04:12:50,427 | INFO     | 
[2026-01-09 05:13:21] 2026-01-09 04:12:50,428 | INFO     | architecture information:
[2026-01-09 05:13:21] 2026-01-09 04:12:50,428 | INFO     | executing command: cat /etc/os-release
[2026-01-09 05:13:21] 2026-01-09 04:12:50,437 | INFO     | cat /etc/os-release:
[2026-01-09 05:13:21] NAME="CentOS Linux"
[2026-01-09 05:13:21] VERSION="7 (Core)"
[2026-01-09 05:13:21] ID="centos"
[2026-01-09 05:13:21] ID_LIKE="rhel fedora"
[2026-01-09 05:13:21] VERSION_ID="7"
[2026-01-09 05:13:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 05:13:21] ANSI_COLOR="0;31"
[2026-01-09 05:13:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 05:13:21] HOME_URL="https://www.centos.org/"
[2026-01-09 05:13:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 05:13:21] 
[2026-01-09 05:13:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 05:13:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 05:13:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 05:13:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 05:13:21] 
[2026-01-09 05:13:21] 2026-01-09 04:12:50,437 | INFO     | ***************************************
[2026-01-09 05:13:21] 2026-01-09 04:12:50,940 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 05:13:21] 2026-01-09 04:12:50,950 | INFO     | sufficient remaining disk space (384509673472 B)
[2026-01-09 05:13:21] 2026-01-09 04:12:50,950 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 05:13:21] 2026-01-09 04:12:50,950 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 05:13:21] 2026-01-09 04:12:50,950 | INFO     | update_server=False
[2026-01-09 05:13:21] 2026-01-09 04:12:50,951 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 05:13:21] 2026-01-09 04:12:50,951 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 05:13:21] 2026-01-09 04:12:50,951 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:13:21] 2026-01-09 04:12:50,951 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:13:21] 2026-01-09 04:12:50,951 | INFO     | aborting loop
[2026-01-09 05:13:21] 2026-01-09 04:12:51,290 | INFO     | all data control threads have been joined
[2026-01-09 05:13:21] 2026-01-09 04:12:51,649 | INFO     | all payload control threads have been joined
[2026-01-09 05:13:21] 2026-01-09 04:12:51,956 | INFO     | [job] queue monitor thread has finished
[2026-01-09 05:13:21] 2026-01-09 04:12:51,956 | INFO     | [job] job monitor thread has finished
[2026-01-09 05:13:21] 2026-01-09 04:12:51,956 | INFO     | [job] retrieve thread has finished
[2026-01-09 05:13:21] 2026-01-09 04:12:52,109 [wrapper] supervise_pilot (15 min periods counter: 9)
[2026-01-09 05:13:21] 2026-01-09 04:12:52,189 | INFO     | all job control threads have been joined
[2026-01-09 05:13:21] 2026-01-09 04:12:52,249 | INFO     | [payload] validate_post thread has finished
[2026-01-09 05:13:21] 2026-01-09 04:12:52,296 | INFO     | [data] control thread has finished
[2026-01-09 05:13:21] 2026-01-09 04:12:52,654 | INFO     | [payload] control thread has finished
[2026-01-09 05:13:21] 2026-01-09 04:12:52,740 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 05:13:21] 2026-01-09 04:12:52,956 | INFO     | [data] copytool_out thread has finished
[2026-01-09 05:13:21] 2026-01-09 04:12:52,959 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 05:13:21] 2026-01-09 04:12:53,140 | INFO     | [data] copytool_in thread has finished
[2026-01-09 05:13:21] 2026-01-09 04:12:53,194 | INFO     | [job] control thread has finished
[2026-01-09 05:13:21] 2026-01-09 04:12:53,329 | INFO     | [job] validate thread has finished
[2026-01-09 05:13:21] 2026-01-09 04:12:53,341 | INFO     | [payload] failed_post thread has finished
[2026-01-09 05:13:21] 2026-01-09 04:12:53,397 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 05:13:21] 2026-01-09 04:12:53,406 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 05:13:21] 2026-01-09 04:12:56,964 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 05:13:21] 2026-01-09 04:13:01,695 | INFO     | job.realtimelogging is not enabled
[2026-01-09 05:13:21] 2026-01-09 04:13:01,960 | INFO     | [monitor] cgroup control has ended
[2026-01-09 05:13:21] 2026-01-09 04:13:02,700 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 05:13:21] 2026-01-09 04:13:04,450 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139663333623616)>', '<ExcThread(monitor, started 139662471460608)>']
[2026-01-09 05:13:21] 2026-01-09 04:13:09,475 | INFO     | all workflow threads have been joined
[2026-01-09 05:13:21] 2026-01-09 04:13:09,476 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 05:13:21] 2026-01-09 04:13:09,476 | INFO     | traces error code: 0
[2026-01-09 05:13:21] 2026-01-09 04:13:09,476 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 05:13:21] 2026-01-09 04:13:21,192 | INFO     | PID=3471359 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 05:13:21] 2026-01-09 04:13:21,192 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 05:13:21] 2026-01-09 04:13:21,192 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 05:13:21] 2026-01-09 04:13:21,192 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 05:13:21] 2026-01-09 04:13:21,192 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 05:13:21] 2026-01-09 04:13:21,192 | INFO     | [monitor] control thread has ended
[2026-01-09 05:13:21] 2026-01-09 04:13:21,239 [wrapper] ==== pilot stdout END ====
[2026-01-09 05:13:21] 2026-01-09 04:13:21,242 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 05:13:21] 2026-01-09 04:13:21,245 [wrapper] pilotpid: 3471359
[2026-01-09 05:13:21] 2026-01-09 04:13:21,247 [wrapper] Pilot exit status: 0
[2026-01-09 05:13:21] 2026-01-09 04:13:21,255 [wrapper] pandaids: 6962922578
[2026-01-09 05:13:21] 2026-01-09 04:13:21,275 [wrapper] cleanup supervisor_pilot 3495531 3471360
[2026-01-09 05:13:21] 2026-01-09 04:13:21,278 [wrapper] Test setup, not cleaning
[2026-01-09 05:13:21] 2026-01-09 04:13:21,281 [wrapper] apfmon messages muted
[2026-01-09 05:13:21] 2026-01-09 04:13:21,283 [wrapper] ==== wrapper stdout END ====
[2026-01-09 05:13:21] 2026-01-09 04:13:21,285 [wrapper] ==== wrapper stderr END ====
[2026-01-09 05:13:21]  *** Error codes and diagnostics ***
[2026-01-09 05:13:21]     "exeErrorCode": 0,
[2026-01-09 05:13:21]     "exeErrorDiag": "",
[2026-01-09 05:13:21]     "pilotErrorCode": 0,
[2026-01-09 05:13:21]     "pilotErrorDiag": "",
[2026-01-09 05:13:21]  *** Listing of results directory ***
[2026-01-09 05:13:21] total 446752
[2026-01-09 05:13:21] -rwx------ 1 boinc boinc     36322 Jan  8 09:20 runpilot2-wrapper.sh
[2026-01-09 05:13:21] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:23 queuedata.json
[2026-01-09 05:13:21] -rw-r--r-- 1 boinc boinc    579449 Jan  8 09:23 pilot3.tar.gz
[2026-01-09 05:13:21] -rw-r--r-- 1 boinc boinc       100 Jan  9 03:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 05:13:21] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 03:12 run_atlas
[2026-01-09 05:13:21] -rw-r--r-- 1 boinc boinc       105 Jan  9 03:12 job.xml
[2026-01-09 05:13:21] -rw-r--r-- 2 boinc boinc 225502966 Jan  9 03:12 EVNT.47898824._000846.pool.root.1
[2026-01-09 05:13:21] -rw-r--r-- 2 boinc boinc    592400 Jan  9 03:12 input.tar.gz
[2026-01-09 05:13:21] -rw-r--r-- 2 boinc boinc     15847 Jan  9 03:12 start_atlas.sh
[2026-01-09 05:13:21] drwxrwx--x 2 boinc boinc      4096 Jan  9 03:12 shared
[2026-01-09 05:13:21] -rw-r--r-- 1 boinc boinc         0 Jan  9 03:12 boinc_setup_complete
[2026-01-09 05:13:21] -rw-r--r-- 1 boinc boinc      6449 Jan  9 03:12 init_data.xml
[2026-01-09 05:13:21] -rw-r--r-- 1 boinc boinc         0 Jan  9 03:12 boinc_lockfile
[2026-01-09 05:13:21] -rw-r--r-- 1 boinc boinc      2518 Jan  9 03:12 pandaJob.out
[2026-01-09 05:13:21] -rw------- 1 boinc boinc    989821 Jan  9 03:12 agis_schedconf.cvmfs.json
[2026-01-09 05:13:21] -rw------- 1 boinc boinc   1516240 Jan  9 03:12 agis_ddmendpoints.agis.ALL.json
[2026-01-09 05:13:21] drwx------ 5 boinc boinc      4096 Jan  9 03:12 pilot3
[2026-01-09 05:13:21] -rw------- 1 boinc boinc 225441882 Jan  9 05:12 HITS.47898826._022013.pool.root.1
[2026-01-09 05:13:21] -rw-r--r-- 1 boinc boinc       529 Jan  9 05:12 boinc_task_state.xml
[2026-01-09 05:13:21] -rw------- 1 boinc boinc        95 Jan  9 05:12 pilot_heartbeat.json
[2026-01-09 05:13:21] -rw------- 1 boinc boinc      1013 Jan  9 05:12 memory_monitor_summary.json
[2026-01-09 05:13:21] -rw------- 1 boinc boinc    284409 Jan  9 05:12 log.47898826._022013.job.log.tgz.1
[2026-01-09 05:13:21] -rw------- 1 boinc boinc      7753 Jan  9 05:12 heartbeat.json
[2026-01-09 05:13:21] -rw-r--r-- 1 boinc boinc        27 Jan  9 05:13 wrapper_checkpoint.txt
[2026-01-09 05:13:21] -rw-r--r-- 1 boinc boinc      8192 Jan  9 05:13 boinc_mmap_file
[2026-01-09 05:13:21] -rw------- 1 boinc boinc       747 Jan  9 05:13 pilotlog.txt
[2026-01-09 05:13:21] -rw------- 1 boinc boinc   1032415 Jan  9 05:13 log.47898826._022013.job.log.1
[2026-01-09 05:13:21] -rw------- 1 boinc boinc       357 Jan  9 05:13 output.list
[2026-01-09 05:13:21] -rw-r--r-- 1 boinc boinc       620 Jan  9 05:13 runtime_log
[2026-01-09 05:13:21] -rw------- 1 boinc boinc   1331200 Jan  9 05:13 result.tar.gz
[2026-01-09 05:13:21] -rw-r--r-- 1 boinc boinc      8917 Jan  9 05:13 runtime_log.err
[2026-01-09 05:13:21] -rw------- 1 boinc boinc       663 Jan  9 05:13 FTQLDmIR0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQreKDmtcofEo.diag
[2026-01-09 05:13:21] -rw-r--r-- 1 boinc boinc     10281 Jan  9 05:13 stderr.txt
[2026-01-09 05:13:21] HITS file was successfully produced:
[2026-01-09 05:13:21] -rw------- 1 boinc boinc 225441882 Jan  9 05:12 shared/HITS.pool.root.1
[2026-01-09 05:13:21]  *** Contents of shared directory: ***
[2026-01-09 05:13:21] total 442284
[2026-01-09 05:13:21] -rw-r--r-- 2 boinc boinc 225502966 Jan  9 03:12 ATLAS.root_0
[2026-01-09 05:13:21] -rw-r--r-- 2 boinc boinc    592400 Jan  9 03:12 input.tar.gz
[2026-01-09 05:13:21] -rw-r--r-- 2 boinc boinc     15847 Jan  9 03:12 start_atlas.sh
[2026-01-09 05:13:21] -rw------- 1 boinc boinc 225441882 Jan  9 05:12 HITS.pool.root.1
[2026-01-09 05:13:21] -rw------- 1 boinc boinc   1331200 Jan  9 05:13 result.tar.gz
05:13:23 (3467631): run_atlas exited; CPU time 20909.551519
05:13:23 (3467631): called boinc_finish(0)

</stderr_txt>
]]>

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