Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
14:18:33 (3900261): wrapper (7.7.26015): starting
14:18:33 (3900261): wrapper: running run_atlas (--nthreads 4)
[2026-01-11 14:18:33] Arguments: --nthreads 4
[2026-01-11 14:18:33] Threads: 4
[2026-01-11 14:18:33] Checking for CVMFS
[2026-01-11 14:18:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 14:18:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 14:18:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 14:18:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 14:18:33] 2.12.7.0 3694947 5631 67684 155018 2 57 5242790 6144001 1834 130560 0 10158045 99.995 211759 1872 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.42:3128 1
[2026-01-11 14:18:33] CVMFS is ok
[2026-01-11 14:18:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 14:18:33] Checking for apptainer binary...
[2026-01-11 14:18:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 14:18:33] Running /usr/bin/apptainer --version
[2026-01-11 14:18:33] apptainer version 1.4.5
[2026-01-11 14:18:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 14:18:33] Ryzen8
[2026-01-11 14:18:33] apptainer works
[2026-01-11 14:18:33] Set ATHENA_PROC_NUMBER=4
[2026-01-11 14:18:33] Set ATHENA_CORE_NUMBER=4
[2026-01-11 14:18:33] Starting ATLAS job with PandaID=6962913749
[2026-01-11 14:18:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 16:12:54]  *** The last 200 lines of the pilot log: ***
[2026-01-11 16:12:54] 2026-01-11 15:12:11,112 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4335.535416666667
[2026-01-11 16:12:54] 2026-01-11 15:12:11,113 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6962913749/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 16:12:54] 2026-01-11 15:12:11,114 | INFO     | extracted standard info from prmon json
[2026-01-11 16:12:54] 2026-01-11 15:12:11,114 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 16:12:54] 2026-01-11 15:12:11,114 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 16:12:54] 2026-01-11 15:12:11,114 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 16:12:54] 2026-01-11 15:12:11,114 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 16:12:54] 2026-01-11 15:12:11,115 | INFO     | fitting pss+swap vs Time
[2026-01-11 16:12:54] 2026-01-11 15:12:11,115 | INFO     | sum of square deviations: 435610028.0
[2026-01-11 16:12:54] 2026-01-11 15:12:11,115 | INFO     | sum of deviations: -21903034387.5
[2026-01-11 16:12:54] 2026-01-11 15:12:11,115 | INFO     | mean x: 1768140922.5
[2026-01-11 16:12:54] 2026-01-11 15:12:11,115 | INFO     | mean y: 2448894.0803571427
[2026-01-11 16:12:54] 2026-01-11 15:12:11,115 | INFO     | intersect: 88906856364.3865
[2026-01-11 16:12:54] 2026-01-11 15:12:11,116 | INFO     | chi2: 2.0011923642772182
[2026-01-11 16:12:54] 2026-01-11 15:12:11,116 | INFO     | sum of square deviations: 379832238.0
[2026-01-11 16:12:54] 2026-01-11 15:12:11,116 | INFO     | sum of deviations: -12588968086.0
[2026-01-11 16:12:54] 2026-01-11 15:12:11,116 | INFO     | mean x: 1768140770.0
[2026-01-11 16:12:54] 2026-01-11 15:12:11,116 | INFO     | mean y: 2473641.271028037
[2026-01-11 16:12:54] 2026-01-11 15:12:11,116 | INFO     | intersect: 58604839365.38701
[2026-01-11 16:12:54] 2026-01-11 15:12:11,116 | INFO     | chi2: 1.1388330524611863
[2026-01-11 16:12:54] 2026-01-11 15:12:11,116 | INFO     | current chi2=1.1388330524611863 (change=43.092274746285824 %)
[2026-01-11 16:12:54] 2026-01-11 15:12:11,116 | INFO     | sum of square deviations: 329031285.5
[2026-01-11 16:12:54] 2026-01-11 15:12:11,117 | INFO     | sum of deviations: -10813852256.500004
[2026-01-11 16:12:54] 2026-01-11 15:12:11,117 | INFO     | mean x: 1768140617.5
[2026-01-11 16:12:54] 2026-01-11 15:12:11,117 | INFO     | mean y: 2478969.205882353
[2026-01-11 16:12:54] 2026-01-11 15:12:11,117 | INFO     | intersect: 58113705010.54134
[2026-01-11 16:12:54] 2026-01-11 15:12:11,117 | INFO     | chi2: 1.1392869356778517
[2026-01-11 16:12:54] 2026-01-11 15:12:11,117 | INFO     | current chi2=1.1392869356778517 (change=-0.039855114468664875 %)
[2026-01-11 16:12:54] 2026-01-11 15:12:11,117 | INFO     | right removable region: 101
[2026-01-11 16:12:54] 2026-01-11 15:12:11,117 | INFO     | sum of square deviations: 379832238.0
[2026-01-11 16:12:54] 2026-01-11 15:12:11,117 | INFO     | sum of deviations: -29653220143.000015
[2026-01-11 16:12:54] 2026-01-11 15:12:11,117 | INFO     | mean x: 1768141075.0
[2026-01-11 16:12:54] 2026-01-11 15:12:11,117 | INFO     | mean y: 2469163.214953271
[2026-01-11 16:12:54] 2026-01-11 15:12:11,117 | INFO     | intersect: 138039927007.57968
[2026-01-11 16:12:54] 2026-01-11 15:12:11,117 | INFO     | chi2: 0.965313582842133
[2026-01-11 16:12:54] 2026-01-11 15:12:11,117 | INFO     | current chi2=0.965313582842133 (change=51.763078848705256 %)
[2026-01-11 16:12:54] 2026-01-11 15:12:11,118 | INFO     | sum of square deviations: 329031285.5
[2026-01-11 16:12:54] 2026-01-11 15:12:11,118 | INFO     | sum of deviations: -27330765130.0
[2026-01-11 16:12:54] 2026-01-11 15:12:11,118 | INFO     | mean x: 1768141227.5
[2026-01-11 16:12:54] 2026-01-11 15:12:11,118 | INFO     | mean y: 2462175.705882353
[2026-01-11 16:12:54] 2026-01-11 15:12:11,118 | INFO     | intersect: 146871938529.71777
[2026-01-11 16:12:54] 2026-01-11 15:12:11,118 | INFO     | chi2: 0.9638005318656709
[2026-01-11 16:12:54] 2026-01-11 15:12:11,118 | INFO     | current chi2=0.9638005318656709 (change=0.15674191302760132 %)
[2026-01-11 16:12:54] 2026-01-11 15:12:11,118 | INFO     | left removable region: 20
[2026-01-11 16:12:54] 2026-01-11 15:12:11,118 | INFO     | sum of square deviations: 164765880.0
[2026-01-11 16:12:54] 2026-01-11 15:12:11,118 | INFO     | sum of deviations: -12684930784.999996
[2026-01-11 16:12:54] 2026-01-11 15:12:11,118 | INFO     | mean x: 1768141197.0
[2026-01-11 16:12:54] 2026-01-11 15:12:11,118 | INFO     | mean y: 2481800.8024691357
[2026-01-11 16:12:54] 2026-01-11 15:12:11,118 | INFO     | intersect: 136127441058.45973
[2026-01-11 16:12:54] 2026-01-11 15:12:11,118 | INFO     | chi2: 0.055400011824893985
[2026-01-11 16:12:54] 2026-01-11 15:12:11,119 | INFO     | current memory leak: -76.99 B/s (using 81 data points, chi2=0.06)
[2026-01-11 16:12:54] 2026-01-11 15:12:11,119 | INFO     | could have reported an average CPU frequency of 4332 MHz (7 samples)
[2026-01-11 16:12:54] 2026-01-11 15:12:11,119 | INFO     | ..............................
[2026-01-11 16:12:54] 2026-01-11 15:12:11,119 | INFO     | . Timing measurements:
[2026-01-11 16:12:54] 2026-01-11 15:12:11,119 | INFO     | . get job = 0 s
[2026-01-11 16:12:54] 2026-01-11 15:12:11,119 | INFO     | . initial setup = 1 s
[2026-01-11 16:12:54] 2026-01-11 15:12:11,119 | INFO     | . payload setup = 2 s
[2026-01-11 16:12:54] 2026-01-11 15:12:11,119 | INFO     | . stage-in = 0 s
[2026-01-11 16:12:54] 2026-01-11 15:12:11,119 | INFO     | . payload execution = 6790 s
[2026-01-11 16:12:54] 2026-01-11 15:12:11,119 | INFO     | . stage-out = 0 s
[2026-01-11 16:12:54] 2026-01-11 15:12:11,119 | INFO     | . log creation = 0 s
[2026-01-11 16:12:54] 2026-01-11 15:12:11,119 | INFO     | ..............................
[2026-01-11 16:12:54] 2026-01-11 15:12:11,166 | INFO     | 
[2026-01-11 16:12:54] 2026-01-11 15:12:11,166 | INFO     | job summary report
[2026-01-11 16:12:54] 2026-01-11 15:12:11,166 | INFO     | --------------------------------------------------
[2026-01-11 16:12:54] 2026-01-11 15:12:11,166 | INFO     | PanDA job id: 6962913749
[2026-01-11 16:12:54] 2026-01-11 15:12:11,166 | INFO     | task id: 47898826
[2026-01-11 16:12:54] 2026-01-11 15:12:11,166 | INFO     | errors: (none)
[2026-01-11 16:12:54] 2026-01-11 15:12:11,166 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 16:12:54] 2026-01-11 15:12:11,166 | INFO     | pilot state: finished 
[2026-01-11 16:12:54] 2026-01-11 15:12:11,166 | INFO     | transexitcode: 0
[2026-01-11 16:12:54] 2026-01-11 15:12:11,166 | INFO     | exeerrorcode: 0
[2026-01-11 16:12:54] 2026-01-11 15:12:11,166 | INFO     | exeerrordiag: 
[2026-01-11 16:12:54] 2026-01-11 15:12:11,166 | INFO     | exitcode: 0
[2026-01-11 16:12:54] 2026-01-11 15:12:11,166 | INFO     | exitmsg: OK
[2026-01-11 16:12:54] 2026-01-11 15:12:11,167 | INFO     | cpuconsumptiontime: 26504 s
[2026-01-11 16:12:54] 2026-01-11 15:12:11,167 | INFO     | nevents: 400
[2026-01-11 16:12:54] 2026-01-11 15:12:11,167 | INFO     | neventsw: 0
[2026-01-11 16:12:54] 2026-01-11 15:12:11,167 | INFO     | pid: 3910419
[2026-01-11 16:12:54] 2026-01-11 15:12:11,167 | INFO     | pgrp: 3910419
[2026-01-11 16:12:54] 2026-01-11 15:12:11,167 | INFO     | corecount: 4
[2026-01-11 16:12:54] 2026-01-11 15:12:11,167 | INFO     | event service: False
[2026-01-11 16:12:54] 2026-01-11 15:12:11,167 | INFO     | sizes: {0: 2283968, 2: 2284230, 11: 2284258, 6796: 2311577, 6797: 2320631, 6799: 2320769}
[2026-01-11 16:12:54] 2026-01-11 15:12:11,167 | INFO     | --------------------------------------------------
[2026-01-11 16:12:54] 2026-01-11 15:12:11,167 | INFO     | 
[2026-01-11 16:12:54] 2026-01-11 15:12:11,167 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2026-01-11 16:12:54] 2026-01-11 15:12:11,179 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 16:12:54] 2026-01-11 15:12:11,180 | INFO     | job 6962913749 has completed (purged errors)
[2026-01-11 16:12:54] 2026-01-11 15:12:11,181 | INFO     | overall cleanup function is called
[2026-01-11 16:12:54] 2026-01-11 15:12:12,187 | INFO     | --- collectZombieJob: --- 10, [3910419]
[2026-01-11 16:12:54] 2026-01-11 15:12:12,187 | INFO     | zombie collector waiting for pid 3910419
[2026-01-11 16:12:54] 2026-01-11 15:12:12,187 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 16:12:54] 2026-01-11 15:12:12,187 | INFO     | collected zombie processes
[2026-01-11 16:12:54] 2026-01-11 15:12:12,187 | INFO     | will attempt to kill all subprocesses of pid=3910419
[2026-01-11 16:12:54] 2026-01-11 15:12:12,245 | INFO     | process IDs to be killed: [3910419] (in reverse order)
[2026-01-11 16:12:54] 2026-01-11 15:12:12,273 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 16:12:54] 2026-01-11 15:12:12,273 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 16:12:54] 2026-01-11 15:12:12,275 | INFO     | did not find any defunct processes belonging to 3910419
[2026-01-11 16:12:54] 2026-01-11 15:12:12,277 | INFO     | did not find any defunct processes belonging to 3910419
[2026-01-11 16:12:54] 2026-01-11 15:12:12,277 | INFO     | ready for new job
[2026-01-11 16:12:54] 2026-01-11 15:12:12,277 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 16:12:54] 2026-01-11 15:12:12,278 | INFO     | ***************************************
[2026-01-11 16:12:54] 2026-01-11 15:12:12,278 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 16:12:54] 2026-01-11 15:12:12,278 | INFO     | ***************************************
[2026-01-11 16:12:54] 2026-01-11 15:12:12,278 | INFO     | 
[2026-01-11 16:12:54] 2026-01-11 15:12:12,278 | INFO     | architecture information:
[2026-01-11 16:12:54] 2026-01-11 15:12:12,279 | INFO     | executing command: cat /etc/os-release
[2026-01-11 16:12:54] 2026-01-11 15:12:12,287 | INFO     | cat /etc/os-release:
[2026-01-11 16:12:54] NAME="CentOS Linux"
[2026-01-11 16:12:54] VERSION="7 (Core)"
[2026-01-11 16:12:54] ID="centos"
[2026-01-11 16:12:54] ID_LIKE="rhel fedora"
[2026-01-11 16:12:54] VERSION_ID="7"
[2026-01-11 16:12:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 16:12:54] ANSI_COLOR="0;31"
[2026-01-11 16:12:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 16:12:54] HOME_URL="https://www.centos.org/"
[2026-01-11 16:12:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 16:12:54] 
[2026-01-11 16:12:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 16:12:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 16:12:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 16:12:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 16:12:54] 
[2026-01-11 16:12:54] 2026-01-11 15:12:12,287 | INFO     | ***************************************
[2026-01-11 16:12:54] 2026-01-11 15:12:12,790 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-01-11 16:12:54] 2026-01-11 15:12:12,805 | INFO     | sufficient remaining disk space (99002351616 B)
[2026-01-11 16:12:54] 2026-01-11 15:12:12,805 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 16:12:54] 2026-01-11 15:12:12,805 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 16:12:54] 2026-01-11 15:12:12,805 | INFO     | update_server=False
[2026-01-11 16:12:54] 2026-01-11 15:12:12,805 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 16:12:54] 2026-01-11 15:12:12,806 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 16:12:54] 2026-01-11 15:12:12,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 16:12:54] 2026-01-11 15:12:12,923 | INFO     | all data control threads have been joined
[2026-01-11 16:12:54] 2026-01-11 15:12:12,959 | INFO     | all job control threads have been joined
[2026-01-11 16:12:54] 2026-01-11 15:12:13,211 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-11 16:12:54] 2026-01-11 15:12:13,211 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-11 16:12:54] 2026-01-11 15:12:13,211 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 16:12:54] 2026-01-11 15:12:13,211 | INFO     | will abort loop
[2026-01-11 16:12:54] 2026-01-11 15:12:13,811 | INFO     | [job] retrieve thread has finished
[2026-01-11 16:12:54] 2026-01-11 15:12:13,811 | INFO     | [job] queue monitor thread has finished
[2026-01-11 16:12:54] 2026-01-11 15:12:13,928 | INFO     | [data] control thread has finished
[2026-01-11 16:12:54] 2026-01-11 15:12:13,945 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 16:12:54] 2026-01-11 15:12:13,964 | INFO     | [job] control thread has finished
[2026-01-11 16:12:54] 2026-01-11 15:12:14,188 | INFO     | all payload control threads have been joined
[2026-01-11 16:12:54] 2026-01-11 15:12:14,217 | INFO     | [job] job monitor thread has finished
[2026-01-11 16:12:54] 2026-01-11 15:12:14,268 | INFO     | [job] validate thread has finished
[2026-01-11 16:12:54] 2026-01-11 15:12:14,283 | INFO     | [payload] validate_post thread has finished
[2026-01-11 16:12:54] 2026-01-11 15:12:14,486 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 16:12:54] 2026-01-11 15:12:14,636 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 16:12:54] 2026-01-11 15:12:14,811 | INFO     | [data] copytool_out thread has finished
[2026-01-11 16:12:54] 2026-01-11 15:12:15,096 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 16:12:54] 2026-01-11 15:12:15,160 | INFO     | [payload] failed_post thread has finished
[2026-01-11 16:12:54] 2026-01-11 15:12:15,194 | INFO     | [payload] control thread has finished
[2026-01-11 16:12:54] 2026-01-11 15:12:15,244 | INFO     | [data] copytool_in thread has finished
[2026-01-11 16:12:54] 2026-01-11 15:12:19,103 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 16:12:54] 2026-01-11 15:12:23,098 | INFO     | job.realtimelogging is not enabled
[2026-01-11 16:12:54] 2026-01-11 15:12:24,103 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 16:12:54] 2026-01-11 15:12:42,634 | INFO     | PID=3903980 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 16:12:54] 2026-01-11 15:12:42,634 | INFO     | .. there are 3 such processes running
[2026-01-11 16:12:54] 2026-01-11 15:12:42,634 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 16:12:54] 2026-01-11 15:12:42,634 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 16:12:54] 2026-01-11 15:12:42,635 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 16:12:54] 2026-01-11 15:12:49,753 | INFO     | [monitor] cgroup control has ended
[2026-01-11 16:12:54] 2026-01-11 15:12:49,806 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140309010810688)>', '<ExcThread(monitor, started 140308385883904)>']
[2026-01-11 16:12:54] 2026-01-11 15:12:50,675 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 16:12:54] 2026-01-11 15:12:50,675 | INFO     | [monitor] control thread has ended
[2026-01-11 16:12:54] 2026-01-11 15:12:54,820 | INFO     | all workflow threads have been joined
[2026-01-11 16:12:54] 2026-01-11 15:12:54,820 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 16:12:54] 2026-01-11 15:12:54,820 | INFO     | traces error code: 0
[2026-01-11 16:12:54] 2026-01-11 15:12:54,820 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 16:12:54] 2026-01-11 15:12:54,883 [wrapper] ==== pilot stdout END ====
[2026-01-11 16:12:54] 2026-01-11 15:12:54,884 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 16:12:54] 2026-01-11 15:12:54,886 [wrapper] pilotpid: 3903980
[2026-01-11 16:12:54] 2026-01-11 15:12:54,887 [wrapper] Pilot exit status: 0
[2026-01-11 16:12:54] 2026-01-11 15:12:54,896 [wrapper] pandaids: 6962913749
[2026-01-11 16:12:54] 2026-01-11 15:12:54,913 [wrapper] cleanup supervisor_pilot 3953922 3903981
[2026-01-11 16:12:54] 2026-01-11 15:12:54,915 [wrapper] Test setup, not cleaning
[2026-01-11 16:12:54] 2026-01-11 15:12:54,916 [wrapper] apfmon messages muted
[2026-01-11 16:12:54] 2026-01-11 15:12:54,918 [wrapper] ==== wrapper stdout END ====
[2026-01-11 16:12:54] 2026-01-11 15:12:54,919 [wrapper] ==== wrapper stderr END ====
[2026-01-11 16:12:54]  *** Error codes and diagnostics ***
[2026-01-11 16:12:54]     "exeErrorCode": 0,
[2026-01-11 16:12:54]     "exeErrorDiag": "",
[2026-01-11 16:12:54]     "pilotErrorCode": 0,
[2026-01-11 16:12:54]     "pilotErrorDiag": "",
[2026-01-11 16:12:54]  *** Listing of results directory ***
[2026-01-11 16:12:54] insgesamt 435912
[2026-01-11 16:12:54] -rw-r--r-- 1 boinc boinc    579449  8. Jan 08:56 pilot3.tar.gz
[2026-01-11 16:12:54] -rw-r--r-- 1 boinc boinc      5112  8. Jan 08:59 queuedata.json
[2026-01-11 16:12:54] -rwx------ 1 boinc boinc     36322  8. Jan 09:00 runpilot2-wrapper.sh
[2026-01-11 16:12:54] -rw-r--r-- 1 boinc boinc       100 11. Jan 14:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 16:12:54] -rwxr-xr-x 1 boinc boinc      7986 11. Jan 14:18 run_atlas
[2026-01-11 16:12:54] -rw-r--r-- 1 boinc boinc       105 11. Jan 14:18 job.xml
[2026-01-11 16:12:54] -rw-r--r-- 2 boinc boinc     15847 11. Jan 14:18 start_atlas.sh
[2026-01-11 16:12:54] drwxrwx--x 2 boinc boinc      4096 11. Jan 14:18 shared
[2026-01-11 16:12:54] -rw-r--r-- 2 boinc boinc    592404 11. Jan 14:18 input.tar.gz
[2026-01-11 16:12:54] -rw-r--r-- 1 boinc boinc      9649 11. Jan 14:18 init_data.xml
[2026-01-11 16:12:54] -rw-r--r-- 2 boinc boinc 224920903 11. Jan 14:18 EVNT.47898824._000301.pool.root.1
[2026-01-11 16:12:54] -rw-r--r-- 1 boinc boinc         0 11. Jan 14:18 boinc_lockfile
[2026-01-11 16:12:54] -rw-r--r-- 1 boinc boinc      2518 11. Jan 14:18 pandaJob.out
[2026-01-11 16:12:54] -rw------- 1 boinc boinc        52 11. Jan 14:18 setup.sh.local
[2026-01-11 16:12:54] -rw------- 1 boinc boinc    989556 11. Jan 14:18 agis_schedconf.cvmfs.json
[2026-01-11 16:12:54] -rw------- 1 boinc boinc   1516240 11. Jan 14:18 agis_ddmendpoints.agis.ALL.json
[2026-01-11 16:12:54] drwx------ 5 boinc boinc      4096 11. Jan 14:18 pilot3
[2026-01-11 16:12:54] -rw------- 1 boinc boinc 214924106 11. Jan 16:11 HITS.47898826._017089.pool.root.1
[2026-01-11 16:12:54] -rw------- 1 boinc boinc      1016 11. Jan 16:12 memory_monitor_summary.json
[2026-01-11 16:12:54] -rw------- 1 boinc boinc    298517 11. Jan 16:12 log.47898826._017089.job.log.tgz.1
[2026-01-11 16:12:54] -rw-r--r-- 1 boinc boinc       529 11. Jan 16:12 boinc_task_state.xml
[2026-01-11 16:12:54] -rw------- 1 boinc boinc      7762 11. Jan 16:12 heartbeat.json
[2026-01-11 16:12:54] -rw------- 1 boinc boinc        95 11. Jan 16:12 pilot_heartbeat.json
[2026-01-11 16:12:54] -rw-r--r-- 1 boinc boinc      8192 11. Jan 16:12 boinc_mmap_file
[2026-01-11 16:12:54] -rw-r--r-- 1 boinc boinc        27 11. Jan 16:12 wrapper_checkpoint.txt
[2026-01-11 16:12:54] -rw------- 1 boinc boinc      5081 11. Jan 16:12 pilotlog.txt
[2026-01-11 16:12:54] -rw------- 1 boinc boinc   1006173 11. Jan 16:12 log.47898826._017089.job.log.1
[2026-01-11 16:12:54] -rw------- 1 boinc boinc       357 11. Jan 16:12 output.list
[2026-01-11 16:12:54] -rw-r--r-- 1 boinc boinc       620 11. Jan 16:12 runtime_log
[2026-01-11 16:12:54] -rw------- 1 boinc boinc   1320960 11. Jan 16:12 result.tar.gz
[2026-01-11 16:12:54] -rw-r--r-- 1 boinc boinc      9277 11. Jan 16:12 runtime_log.err
[2026-01-11 16:12:54] -rw------- 1 boinc boinc       641 11. Jan 16:12 g1hNDmv7zx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmULjKDmAv2OXo.diag
[2026-01-11 16:12:54] -rw-r--r-- 1 boinc boinc     20727 11. Jan 16:12 stderr.txt
[2026-01-11 16:12:54] HITS file was successfully produced:
[2026-01-11 16:12:54] -rw------- 1 boinc boinc 214924106 11. Jan 16:11 shared/HITS.pool.root.1
[2026-01-11 16:12:54]  *** Contents of shared directory: ***
[2026-01-11 16:12:54] insgesamt 431436
[2026-01-11 16:12:54] -rw-r--r-- 2 boinc boinc     15847 11. Jan 14:18 start_atlas.sh
[2026-01-11 16:12:54] -rw-r--r-- 2 boinc boinc    592404 11. Jan 14:18 input.tar.gz
[2026-01-11 16:12:54] -rw-r--r-- 2 boinc boinc 224920903 11. Jan 14:18 ATLAS.root_0
[2026-01-11 16:12:54] -rw------- 1 boinc boinc 214924106 11. Jan 16:11 HITS.pool.root.1
[2026-01-11 16:12:54] -rw------- 1 boinc boinc   1320960 11. Jan 16:12 result.tar.gz
16:12:56 (3900261): run_atlas exited; CPU time 26551.353536
16:12:56 (3900261): called boinc_finish(0)

</stderr_txt>
]]>

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