Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:41:38 (859546): wrapper (7.7.26015): starting
02:41:38 (859546): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 02:41:38] Arguments: --nthreads 3
[2026-01-09 02:41:38] Threads: 3
[2026-01-09 02:41:38] Checking for CVMFS
[2026-01-09 02:41:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 02:41:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 02:41:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 02:41:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 02:41:38] 2.9.2.0 474489 1591 80804 154926 0 81 16110207 36864001 0 130560 0 1021927 99.988 59191 6201 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 02:41:38] CVMFS is ok
[2026-01-09 02:41:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 02:41:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 02:41:38] Further information can be found at the LHC@home message board.
[2026-01-09 02:41:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 02:41:38] Checking for apptainer binary...
[2026-01-09 02:41:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 02:41:38] Running /usr/bin/apptainer --version
[2026-01-09 02:41:38] apptainer version 1.4.1-1.1
[2026-01-09 02:41:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 02:41:38] thA371
[2026-01-09 02:41:38] apptainer works
[2026-01-09 02:41:38] Set ATHENA_PROC_NUMBER=3
[2026-01-09 02:41:38] Set ATHENA_CORE_NUMBER=3
[2026-01-09 02:41:38] Starting ATLAS job with PandaID=6962931128
[2026-01-09 02:41:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 04:23:00]  *** The last 200 lines of the pilot log: ***
[2026-01-09 04:23:00] 2026-01-09 03:22:29,379 | INFO     | --- collectZombieJob: --- 10, [869714]
[2026-01-09 04:23:00] 2026-01-09 03:22:29,379 | INFO     | zombie collector waiting for pid 869714
[2026-01-09 04:23:00] 2026-01-09 03:22:29,379 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 04:23:00] 2026-01-09 03:22:29,379 | INFO     | collected zombie processes
[2026-01-09 04:23:00] 2026-01-09 03:22:29,379 | INFO     | will attempt to kill all subprocesses of pid=869714
[2026-01-09 04:23:00] 2026-01-09 03:22:29,423 | INFO     | process IDs to be killed: [869714] (in reverse order)
[2026-01-09 04:23:00] 2026-01-09 03:22:29,447 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 04:23:00] 2026-01-09 03:22:29,448 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 04:23:00] 2026-01-09 03:22:29,449 | INFO     | did not find any defunct processes belonging to 869714
[2026-01-09 04:23:00] 2026-01-09 03:22:29,450 | INFO     | did not find any defunct processes belonging to 869714
[2026-01-09 04:23:00] 2026-01-09 03:22:29,450 | INFO     | ready for new job
[2026-01-09 04:23:00] 2026-01-09 03:22:29,450 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 04:23:00] 2026-01-09 03:22:29,451 | INFO     | ***************************************
[2026-01-09 04:23:00] 2026-01-09 03:22:29,451 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 04:23:00] 2026-01-09 03:22:29,451 | INFO     | ***************************************
[2026-01-09 04:23:00] 2026-01-09 03:22:29,451 | INFO     | 
[2026-01-09 04:23:00] 2026-01-09 03:22:29,451 | INFO     | architecture information:
[2026-01-09 04:23:00] 2026-01-09 03:22:29,451 | INFO     | executing command: cat /etc/os-release
[2026-01-09 04:23:00] 2026-01-09 03:22:29,460 | INFO     | cat /etc/os-release:
[2026-01-09 04:23:00] NAME="CentOS Linux"
[2026-01-09 04:23:00] VERSION="7 (Core)"
[2026-01-09 04:23:00] ID="centos"
[2026-01-09 04:23:00] ID_LIKE="rhel fedora"
[2026-01-09 04:23:00] VERSION_ID="7"
[2026-01-09 04:23:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 04:23:00] ANSI_COLOR="0;31"
[2026-01-09 04:23:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 04:23:00] HOME_URL="https://www.centos.org/"
[2026-01-09 04:23:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 04:23:00] 
[2026-01-09 04:23:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 04:23:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 04:23:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 04:23:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 04:23:00] 
[2026-01-09 04:23:00] 2026-01-09 03:22:29,460 | INFO     | ***************************************
[2026-01-09 04:23:00] 2026-01-09 03:22:29,963 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 04:23:00] 2026-01-09 03:22:29,975 | INFO     | sufficient remaining disk space (344181440512 B)
[2026-01-09 04:23:00] 2026-01-09 03:22:29,975 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 04:23:00] 2026-01-09 03:22:29,976 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 04:23:00] 2026-01-09 03:22:29,976 | INFO     | update_server=False
[2026-01-09 04:23:00] 2026-01-09 03:22:29,976 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 04:23:00] 2026-01-09 03:22:29,976 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 04:23:00] 2026-01-09 03:22:29,976 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 04:23:00] 2026-01-09 03:22:29,976 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 04:23:00] 2026-01-09 03:22:29,976 | INFO     | aborting loop
[2026-01-09 04:23:00] 2026-01-09 03:22:30,186 | INFO     | all data control threads have been joined
[2026-01-09 04:23:00] 2026-01-09 03:22:30,439 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 04:23:00] 2026-01-09 03:22:30,632 | INFO     | all payload control threads have been joined
[2026-01-09 04:23:00] 2026-01-09 03:22:30,915 | INFO     | all job control threads have been joined
[2026-01-09 04:23:00] 2026-01-09 03:22:30,981 | INFO     | [job] retrieve thread has finished
[2026-01-09 04:23:00] 2026-01-09 03:22:30,982 | INFO     | [job] queue monitor thread has finished
[2026-01-09 04:23:00] 2026-01-09 03:22:30,982 | INFO     | [job] job monitor thread has finished
[2026-01-09 04:23:00] 2026-01-09 03:22:30,984 | INFO     | [data] copytool_in thread has finished
[2026-01-09 04:23:00] 2026-01-09 03:22:31,191 | INFO     | [data] control thread has finished
[2026-01-09 04:23:00] 2026-01-09 03:22:31,439 | INFO     | [payload] failed_post thread has finished
[2026-01-09 04:23:00] 2026-01-09 03:22:31,488 | INFO     | [job] validate thread has finished
[2026-01-09 04:23:00] 2026-01-09 03:22:31,579 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 04:23:00] 2026-01-09 03:22:31,637 | INFO     | [payload] control thread has finished
[2026-01-09 04:23:00] 2026-01-09 03:22:31,645 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 04:23:00] 2026-01-09 03:22:31,665 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 04:23:00] 2026-01-09 03:22:31,905 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 04:23:00] 2026-01-09 03:22:31,921 | INFO     | [job] control thread has finished
[2026-01-09 04:23:00] 2026-01-09 03:22:31,982 | INFO     | [data] copytool_out thread has finished
[2026-01-09 04:23:00] 2026-01-09 03:22:32,111 | INFO     | [payload] validate_post thread has finished
[2026-01-09 04:23:00] 2026-01-09 03:22:34,446 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 04:23:00] 2026-01-09 03:22:50,917 | INFO     | [monitor] cgroup control has ended
[2026-01-09 04:23:00] 2026-01-09 03:22:52,200 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140331313686336)>', '<ExcThread(monitor, started 140330959607552)>']
[2026-01-09 04:23:00] 2026-01-09 03:22:57,226 | INFO     | all workflow threads have been joined
[2026-01-09 04:23:00] 2026-01-09 03:22:57,226 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 04:23:00] 2026-01-09 03:22:57,226 | INFO     | traces error code: 0
[2026-01-09 04:23:00] 2026-01-09 03:22:57,226 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 04:23:00] 2026-01-09 03:22:59,899 | INFO     | PID=863270 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 04:23:00] 2026-01-09 03:22:59,899 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 04:23:00] 2026-01-09 03:22:59,899 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 04:23:00] 2026-01-09 03:22:59,899 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 04:23:00] 2026-01-09 03:22:59,899 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 04:23:00] 2026-01-09 03:22:59,899 | INFO     | [monitor] control thread has ended
[2026-01-09 04:23:00] 2026-01-09 03:22:59,946 [wrapper] ==== pilot stdout END ====
[2026-01-09 04:23:00] 2026-01-09 03:22:59,949 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 04:23:00] 2026-01-09 03:22:59,951 [wrapper] pilotpid: 863270
[2026-01-09 04:23:00] 2026-01-09 03:22:59,953 [wrapper] Pilot exit status: 0
[2026-01-09 04:23:00] 2026-01-09 03:22:59,960 [wrapper] pandaids: 6962931128
[2026-01-09 04:23:00] 2026-01-09 03:22:59,976 [wrapper] cleanup supervisor_pilot  882410 863271
[2026-01-09 04:23:00] 2026-01-09 03:22:59,979 [wrapper] Test setup, not cleaning
[2026-01-09 04:23:00] 2026-01-09 03:22:59,981 [wrapper] apfmon messages muted
[2026-01-09 04:23:00] 2026-01-09 03:22:59,983 [wrapper] ==== wrapper stdout END ====
[2026-01-09 04:23:00] 2026-01-09 03:22:59,986 [wrapper] ==== wrapper stderr END ====
[2026-01-09 04:23:00]  *** Error codes and diagnostics ***
[2026-01-09 04:23:00]     "exeErrorCode": 0,
[2026-01-09 04:23:00]     "exeErrorDiag": "",
[2026-01-09 04:23:00]     "pilotErrorCode": 0,
[2026-01-09 04:23:00]     "pilotErrorDiag": "",
[2026-01-09 04:23:00]  *** Listing of results directory ***
[2026-01-09 04:23:00] total 558788
[2026-01-09 04:23:00] -rwx------ 1 boinc boinc     36322 Jan  8 09:21 runpilot2-wrapper.sh
[2026-01-09 04:23:00] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:23 queuedata.json
[2026-01-09 04:23:00] -rw-r--r-- 1 boinc boinc    579449 Jan  8 09:23 pilot3.tar.gz
[2026-01-09 04:23:00] -rw-r--r-- 1 boinc boinc       100 Jan  9 02:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 04:23:00] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 02:41 run_atlas
[2026-01-09 04:23:00] -rw-r--r-- 1 boinc boinc       105 Jan  9 02:41 job.xml
[2026-01-09 04:23:00] -rw-r--r-- 2 boinc boinc 417525240 Jan  9 02:41 EVNT.47961955._000021.pool.root.1
[2026-01-09 04:23:00] -rw-r--r-- 2 boinc boinc    592611 Jan  9 02:41 input.tar.gz
[2026-01-09 04:23:00] -rw-r--r-- 2 boinc boinc     15847 Jan  9 02:41 start_atlas.sh
[2026-01-09 04:23:00] drwxrwx--x 2 boinc boinc      4096 Jan  9 02:41 shared
[2026-01-09 04:23:00] -rw-r--r-- 1 boinc boinc         0 Jan  9 02:41 boinc_setup_complete
[2026-01-09 04:23:00] -rw-r--r-- 1 boinc boinc      6439 Jan  9 02:41 init_data.xml
[2026-01-09 04:23:00] -rw-r--r-- 1 boinc boinc         0 Jan  9 02:41 boinc_lockfile
[2026-01-09 04:23:00] -rw-r--r-- 1 boinc boinc      2875 Jan  9 02:41 pandaJob.out
[2026-01-09 04:23:00] -rw------- 1 boinc boinc    989821 Jan  9 02:41 agis_schedconf.cvmfs.json
[2026-01-09 04:23:00] -rw------- 1 boinc boinc   1516240 Jan  9 02:41 agis_ddmendpoints.agis.ALL.json
[2026-01-09 04:23:00] drwx------ 5 boinc boinc      4096 Jan  9 02:41 pilot3
[2026-01-09 04:23:00] -rw-r--r-- 1 boinc boinc       529 Jan  9 04:19 boinc_task_state.xml
[2026-01-09 04:23:00] -rw------- 1 boinc boinc 147596033 Jan  9 04:22 HITS.47961959._000323.pool.root.1
[2026-01-09 04:23:00] -rw------- 1 boinc boinc        95 Jan  9 04:22 pilot_heartbeat.json
[2026-01-09 04:23:00] -rw------- 1 boinc boinc      1015 Jan  9 04:22 memory_monitor_summary.json
[2026-01-09 04:23:00] -rw------- 1 boinc boinc    701671 Jan  9 04:22 log.47961959._000323.job.log.tgz.1
[2026-01-09 04:23:00] -rw------- 1 boinc boinc      8534 Jan  9 04:22 heartbeat.json
[2026-01-09 04:23:00] -rw-r--r-- 1 boinc boinc      8192 Jan  9 04:22 boinc_mmap_file
[2026-01-09 04:23:00] -rw-r--r-- 1 boinc boinc        27 Jan  9 04:22 wrapper_checkpoint.txt
[2026-01-09 04:23:00] -rw------- 1 boinc boinc       746 Jan  9 04:22 pilotlog.txt
[2026-01-09 04:23:00] -rw------- 1 boinc boinc    884738 Jan  9 04:22 log.47961959._000323.job.log.1
[2026-01-09 04:23:00] -rw------- 1 boinc boinc       353 Jan  9 04:23 output.list
[2026-01-09 04:23:00] -rw-r--r-- 1 boinc boinc       620 Jan  9 04:23 runtime_log
[2026-01-09 04:23:00] -rw------- 1 boinc boinc   1607680 Jan  9 04:23 result.tar.gz
[2026-01-09 04:23:00] -rw-r--r-- 1 boinc boinc      8897 Jan  9 04:23 runtime_log.err
[2026-01-09 04:23:00] -rw------- 1 boinc boinc       659 Jan  9 04:23 UrLMDmhR0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGueKDmsoODpn.diag
[2026-01-09 04:23:00] -rw-r--r-- 1 boinc boinc     10602 Jan  9 04:23 stderr.txt
[2026-01-09 04:23:00] HITS file was successfully produced:
[2026-01-09 04:23:00] -rw------- 1 boinc boinc 147596033 Jan  9 04:22 shared/HITS.pool.root.1
[2026-01-09 04:23:00]  *** Contents of shared directory: ***
[2026-01-09 04:23:00] total 554052
[2026-01-09 04:23:00] -rw-r--r-- 2 boinc boinc 417525240 Jan  9 02:41 ATLAS.root_0
[2026-01-09 04:23:00] -rw-r--r-- 2 boinc boinc    592611 Jan  9 02:41 input.tar.gz
[2026-01-09 04:23:00] -rw-r--r-- 2 boinc boinc     15847 Jan  9 02:41 start_atlas.sh
[2026-01-09 04:23:00] -rw------- 1 boinc boinc 147596033 Jan  9 04:22 HITS.pool.root.1
[2026-01-09 04:23:00] -rw------- 1 boinc boinc   1607680 Jan  9 04:23 result.tar.gz
04:23:01 (859546): run_atlas exited; CPU time 16712.675936
04:23:01 (859546): called boinc_finish(0)

</stderr_txt>
]]>

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