Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:08:34 (222396): wrapper (7.7.26015): starting
20:08:34 (222396): wrapper: running run_atlas (--nthreads 3)
[2026-01-08 20:08:34] Arguments: --nthreads 3
[2026-01-08 20:08:34] Threads: 3
[2026-01-08 20:08:34] Checking for CVMFS
[2026-01-08 20:08:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 20:08:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 20:08:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 20:08:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 20:08:34] 2.9.2.0 86975 570 63044 154917 2 56 11587272 36864000 0 130560 0 357923 99.984 27468 16253 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 20:08:34] CVMFS is ok
[2026-01-08 20:08:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 20:08:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 20:08:34] Further information can be found at the LHC@home message board.
[2026-01-08 20:08:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 20:08:34] Checking for apptainer binary...
[2026-01-08 20:08:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 20:08:34] Running /usr/bin/apptainer --version
[2026-01-08 20:08:34] apptainer version 1.4.1-1.1
[2026-01-08 20:08:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 20:08:34] thA330a
[2026-01-08 20:08:34] apptainer works
[2026-01-08 20:08:34] Set ATHENA_PROC_NUMBER=3
[2026-01-08 20:08:34] Set ATHENA_CORE_NUMBER=3
[2026-01-08 20:08:34] Starting ATLAS job with PandaID=6962915486
[2026-01-08 20:08:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 21:58:55]  *** The last 200 lines of the pilot log: ***
[2026-01-08 21:58:55] 2026-01-08 20:58:05,807 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 21:58:55] 2026-01-08 20:58:05,807 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 21:58:55] 2026-01-08 20:58:05,807 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 21:58:55] 2026-01-08 20:58:05,807 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 21:58:55] 2026-01-08 20:58:05,807 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 21:58:55] 2026-01-08 20:58:05,807 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 21:58:55] 2026-01-08 20:58:05,807 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 21:58:55] 2026-01-08 20:58:05,808 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 21:58:55] 2026-01-08 20:58:05,808 | INFO     | job 6962915486 has completed (purged errors)
[2026-01-08 21:58:55] 2026-01-08 20:58:05,808 | INFO     | overall cleanup function is called
[2026-01-08 21:58:55] 2026-01-08 20:58:06,814 | INFO     | --- collectZombieJob: --- 10, [232558]
[2026-01-08 21:58:55] 2026-01-08 20:58:06,814 | INFO     | zombie collector waiting for pid 232558
[2026-01-08 21:58:55] 2026-01-08 20:58:06,814 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 21:58:55] 2026-01-08 20:58:06,814 | INFO     | collected zombie processes
[2026-01-08 21:58:55] 2026-01-08 20:58:06,814 | INFO     | will attempt to kill all subprocesses of pid=232558
[2026-01-08 21:58:55] 2026-01-08 20:58:06,862 | INFO     | process IDs to be killed: [232558] (in reverse order)
[2026-01-08 21:58:55] 2026-01-08 20:58:06,887 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 21:58:55] 2026-01-08 20:58:06,887 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 21:58:55] 2026-01-08 20:58:06,889 | INFO     | did not find any defunct processes belonging to 232558
[2026-01-08 21:58:55] 2026-01-08 20:58:06,890 | INFO     | did not find any defunct processes belonging to 232558
[2026-01-08 21:58:55] 2026-01-08 20:58:06,890 | INFO     | ready for new job
[2026-01-08 21:58:55] 2026-01-08 20:58:06,890 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 21:58:55] 2026-01-08 20:58:06,891 | INFO     | ***************************************
[2026-01-08 21:58:55] 2026-01-08 20:58:06,891 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 21:58:55] 2026-01-08 20:58:06,891 | INFO     | ***************************************
[2026-01-08 21:58:55] 2026-01-08 20:58:06,891 | INFO     | 
[2026-01-08 21:58:55] 2026-01-08 20:58:06,891 | INFO     | architecture information:
[2026-01-08 21:58:55] 2026-01-08 20:58:06,892 | INFO     | executing command: cat /etc/os-release
[2026-01-08 21:58:55] 2026-01-08 20:58:06,901 | INFO     | cat /etc/os-release:
[2026-01-08 21:58:55] NAME="CentOS Linux"
[2026-01-08 21:58:55] VERSION="7 (Core)"
[2026-01-08 21:58:55] ID="centos"
[2026-01-08 21:58:55] ID_LIKE="rhel fedora"
[2026-01-08 21:58:55] VERSION_ID="7"
[2026-01-08 21:58:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 21:58:55] ANSI_COLOR="0;31"
[2026-01-08 21:58:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 21:58:55] HOME_URL="https://www.centos.org/"
[2026-01-08 21:58:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 21:58:55] 
[2026-01-08 21:58:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 21:58:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 21:58:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 21:58:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 21:58:55] 
[2026-01-08 21:58:55] 2026-01-08 20:58:06,901 | INFO     | ***************************************
[2026-01-08 21:58:55] 2026-01-08 20:58:07,404 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 21:58:55] 2026-01-08 20:58:07,417 | INFO     | sufficient remaining disk space (250092716032 B)
[2026-01-08 21:58:55] 2026-01-08 20:58:07,417 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 21:58:55] 2026-01-08 20:58:07,417 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 21:58:55] 2026-01-08 20:58:07,417 | INFO     | update_server=False
[2026-01-08 21:58:55] 2026-01-08 20:58:07,417 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 21:58:55] 2026-01-08 20:58:07,417 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 21:58:55] 2026-01-08 20:58:07,550 | WARNING  | process 232558 can no longer be monitored (due to stat problems) - aborting
[2026-01-08 21:58:55] 2026-01-08 20:58:07,583 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 21:58:55] 2026-01-08 20:58:07,602 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 21:58:55] 2026-01-08 20:58:07,625 | INFO     | number of running child processes to parent process 232558: 1
[2026-01-08 21:58:55] 2026-01-08 20:58:07,625 | INFO     | maximum number of monitored processes: 6
[2026-01-08 21:58:55] 2026-01-08 20:58:07,625 | INFO     | aborting job monitoring since job object (job id=6962915486) has expired
[2026-01-08 21:58:55] 2026-01-08 20:58:07,625 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 21:58:55] 2026-01-08 20:58:07,625 | INFO     | will abort loop
[2026-01-08 21:58:55] 2026-01-08 20:58:08,423 | INFO     | [job] queue monitor thread has finished
[2026-01-08 21:58:55] 2026-01-08 20:58:08,423 | INFO     | [job] retrieve thread has finished
[2026-01-08 21:58:55] 2026-01-08 20:58:08,428 | INFO     | all data control threads have been joined
[2026-01-08 21:58:55] 2026-01-08 20:58:08,608 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 21:58:55] 2026-01-08 20:58:08,631 | INFO     | [job] job monitor thread has finished
[2026-01-08 21:58:55] 2026-01-08 20:58:08,666 | INFO     | [data] copytool_in thread has finished
[2026-01-08 21:58:55] 2026-01-08 20:58:08,684 | INFO     | [payload] failed_post thread has finished
[2026-01-08 21:58:55] 2026-01-08 20:58:08,886 | INFO     | all payload control threads have been joined
[2026-01-08 21:58:55] 2026-01-08 20:58:08,932 | INFO     | all job control threads have been joined
[2026-01-08 21:58:55] 2026-01-08 20:58:08,996 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 21:58:55] 2026-01-08 20:58:09,173 | INFO     | [job] validate thread has finished
[2026-01-08 21:58:55] 2026-01-08 20:58:09,206 | INFO     | [payload] validate_post thread has finished
[2026-01-08 21:58:55] 2026-01-08 20:58:09,236 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 21:58:55] 2026-01-08 20:58:09,243 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 21:58:55] 2026-01-08 20:58:09,433 | INFO     | [data] control thread has finished
[2026-01-08 21:58:55] 2026-01-08 20:58:09,608 | INFO     | [data] copytool_out thread has finished
[2026-01-08 21:58:55] 2026-01-08 20:58:09,892 | INFO     | [payload] control thread has finished
[2026-01-08 21:58:55] 2026-01-08 20:58:09,937 | INFO     | [job] control thread has finished
[2026-01-08 21:58:55] 2026-01-08 20:58:13,003 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 21:58:55] 2026-01-08 20:58:17,894 | INFO     | job.realtimelogging is not enabled
[2026-01-08 21:58:55] 2026-01-08 20:58:18,900 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 21:58:55] 2026-01-08 20:58:37,323 | INFO     | PID=226117 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-08 21:58:55] 2026-01-08 20:58:37,324 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 21:58:55] 2026-01-08 20:58:37,324 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 21:58:55] 2026-01-08 20:58:37,324 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 21:58:55] 2026-01-08 20:58:48,475 | INFO     | [monitor] cgroup control has ended
[2026-01-08 21:58:55] 2026-01-08 20:58:50,276 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139799886448448)>', '<ExcThread(monitor, started 139799532906240)>']
[2026-01-08 21:58:55] 2026-01-08 20:58:50,392 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 21:58:55] 2026-01-08 20:58:50,392 | INFO     | [monitor] control thread has ended
[2026-01-08 21:58:55] 2026-01-08 20:58:55,285 | INFO     | all workflow threads have been joined
[2026-01-08 21:58:55] 2026-01-08 20:58:55,285 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 21:58:55] 2026-01-08 20:58:55,285 | INFO     | traces error code: 0
[2026-01-08 21:58:55] 2026-01-08 20:58:55,286 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 21:58:55] 2026-01-08 20:58:55,335 [wrapper] ==== pilot stdout END ====
[2026-01-08 21:58:55] 2026-01-08 20:58:55,337 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 21:58:55] 2026-01-08 20:58:55,340 [wrapper] pilotpid: 226117
[2026-01-08 21:58:55] 2026-01-08 20:58:55,342 [wrapper] Pilot exit status: 0
[2026-01-08 21:58:55] 2026-01-08 20:58:55,349 [wrapper] pandaids: 6962915486
[2026-01-08 21:58:55] 2026-01-08 20:58:55,366 [wrapper] cleanup supervisor_pilot  246918 226118
[2026-01-08 21:58:55] 2026-01-08 20:58:55,368 [wrapper] Test setup, not cleaning
[2026-01-08 21:58:55] 2026-01-08 20:58:55,371 [wrapper] apfmon messages muted
[2026-01-08 21:58:55] 2026-01-08 20:58:55,373 [wrapper] ==== wrapper stdout END ====
[2026-01-08 21:58:55] 2026-01-08 20:58:55,375 [wrapper] ==== wrapper stderr END ====
[2026-01-08 21:58:55]  *** Error codes and diagnostics ***
[2026-01-08 21:58:55]     "exeErrorCode": 0,
[2026-01-08 21:58:55]     "exeErrorDiag": "",
[2026-01-08 21:58:55]     "pilotErrorCode": 0,
[2026-01-08 21:58:55]     "pilotErrorDiag": "",
[2026-01-08 21:58:55]  *** Listing of results directory ***
[2026-01-08 21:58:55] total 437788
[2026-01-08 21:58:55] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-08 21:58:55] -rwx------ 1 boinc boinc     36322 Jan  8 09:01 runpilot2-wrapper.sh
[2026-01-08 21:58:55] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:03 queuedata.json
[2026-01-08 21:58:55] -rw-r--r-- 1 boinc boinc       100 Jan  8 20:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 21:58:55] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 20:08 run_atlas
[2026-01-08 21:58:55] -rw-r--r-- 1 boinc boinc       105 Jan  8 20:08 job.xml
[2026-01-08 21:58:55] -rw-r--r-- 2 boinc boinc 225169635 Jan  8 20:08 EVNT.47898824._000402.pool.root.1
[2026-01-08 21:58:55] -rw-r--r-- 2 boinc boinc    592403 Jan  8 20:08 input.tar.gz
[2026-01-08 21:58:55] -rw-r--r-- 2 boinc boinc     15847 Jan  8 20:08 start_atlas.sh
[2026-01-08 21:58:55] drwxrwx--x 2 boinc boinc      4096 Jan  8 20:08 shared
[2026-01-08 21:58:55] -rw-r--r-- 1 boinc boinc         0 Jan  8 20:08 boinc_setup_complete
[2026-01-08 21:58:55] -rw-r--r-- 1 boinc boinc      6439 Jan  8 20:08 init_data.xml
[2026-01-08 21:58:55] -rw-r--r-- 1 boinc boinc         0 Jan  8 20:08 boinc_lockfile
[2026-01-08 21:58:55] -rw-r--r-- 1 boinc boinc      2518 Jan  8 20:08 pandaJob.out
[2026-01-08 21:58:55] -rw------- 1 boinc boinc    989829 Jan  8 20:08 agis_schedconf.cvmfs.json
[2026-01-08 21:58:55] -rw------- 1 boinc boinc   1516240 Jan  8 20:08 agis_ddmendpoints.agis.ALL.json
[2026-01-08 21:58:55] drwx------ 5 boinc boinc      4096 Jan  8 20:08 pilot3
[2026-01-08 21:58:55] -rw------- 1 boinc boinc 216778836 Jan  8 21:57 HITS.47898826._018228.pool.root.1
[2026-01-08 21:58:55] -rw-r--r-- 1 boinc boinc       529 Jan  8 21:57 boinc_task_state.xml
[2026-01-08 21:58:55] -rw------- 1 boinc boinc      1019 Jan  8 21:57 memory_monitor_summary.json
[2026-01-08 21:58:55] -rw------- 1 boinc boinc    267957 Jan  8 21:58 log.47898826._018228.job.log.tgz.1
[2026-01-08 21:58:55] -rw------- 1 boinc boinc      7758 Jan  8 21:58 heartbeat.json
[2026-01-08 21:58:55] -rw-r--r-- 1 boinc boinc        27 Jan  8 21:58 wrapper_checkpoint.txt
[2026-01-08 21:58:55] -rw-r--r-- 1 boinc boinc      8192 Jan  8 21:58 boinc_mmap_file
[2026-01-08 21:58:55] -rw------- 1 boinc boinc        95 Jan  8 21:58 pilot_heartbeat.json
[2026-01-08 21:58:55] -rw------- 1 boinc boinc      5345 Jan  8 21:58 pilotlog.txt
[2026-01-08 21:58:55] -rw------- 1 boinc boinc    949196 Jan  8 21:58 log.47898826._018228.job.log.1
[2026-01-08 21:58:55] -rw------- 1 boinc boinc       357 Jan  8 21:58 output.list
[2026-01-08 21:58:55] -rw-r--r-- 1 boinc boinc       620 Jan  8 21:58 runtime_log
[2026-01-08 21:58:55] -rw------- 1 boinc boinc   1239040 Jan  8 21:58 result.tar.gz
[2026-01-08 21:58:55] -rw-r--r-- 1 boinc boinc      8902 Jan  8 21:58 runtime_log.err
[2026-01-08 21:58:55] -rw------- 1 boinc boinc       660 Jan  8 21:58 EkaMDmv8zx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLLeKDmcJdsgm.diag
[2026-01-08 21:58:55] -rw-r--r-- 1 boinc boinc     12333 Jan  8 21:58 stderr.txt
[2026-01-08 21:58:55] HITS file was successfully produced:
[2026-01-08 21:58:55] -rw------- 1 boinc boinc 216778836 Jan  8 21:57 shared/HITS.pool.root.1
[2026-01-08 21:58:55]  *** Contents of shared directory: ***
[2026-01-08 21:58:55] total 433412
[2026-01-08 21:58:55] -rw-r--r-- 2 boinc boinc 225169635 Jan  8 20:08 ATLAS.root_0
[2026-01-08 21:58:55] -rw-r--r-- 2 boinc boinc    592403 Jan  8 20:08 input.tar.gz
[2026-01-08 21:58:55] -rw-r--r-- 2 boinc boinc     15847 Jan  8 20:08 start_atlas.sh
[2026-01-08 21:58:55] -rw------- 1 boinc boinc 216778836 Jan  8 21:57 HITS.pool.root.1
[2026-01-08 21:58:55] -rw------- 1 boinc boinc   1239040 Jan  8 21:58 result.tar.gz
21:58:57 (222396): run_atlas exited; CPU time 19003.429423
21:58:57 (222396): called boinc_finish(0)

</stderr_txt>
]]>

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