Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:13:04 (3547227): wrapper (7.7.26015): starting
16:13:04 (3547227): wrapper: running run_atlas (--nthreads 9)
[2026-01-08 16:13:04] Arguments: --nthreads 9
[2026-01-08 16:13:04] Threads: 9
[2026-01-08 16:13:04] Checking for CVMFS
[2026-01-08 16:13:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 16:13:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 16:13:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 16:13:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 16:13:07] 2.13.3.0 12257 92445 683220 154919 3 536 25042067 32935936 41021 16776704 0 630487868 99.727 424278604 23412 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 16:13:07] CVMFS is ok
[2026-01-08 16:13:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 16:13:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 16:13:07] Further information can be found at the LHC@home message board.
[2026-01-08 16:13:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 16:13:07] Checking for apptainer binary...
[2026-01-08 16:13:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 16:13:07] Running /usr/bin/apptainer --version
[2026-01-08 16:13:07] apptainer version 1.4.5-2.el9
[2026-01-08 16:13:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 16:13:08] c-1-3.aglt2.org
[2026-01-08 16:13:08] apptainer works
[2026-01-08 16:13:08] Set ATHENA_PROC_NUMBER=9
[2026-01-08 16:13:08] Set ATHENA_CORE_NUMBER=9
[2026-01-08 16:13:09] Starting ATLAS job with PandaID=6962920346
[2026-01-08 16:13:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:00:16 (3547227): BOINC client no longer exists - exiting
18:00:16 (3547227): timer handler: client dead, exiting
18:01:01 (4094706): wrapper (7.7.26015): starting
18:01:01 (4094706): wrapper: running run_atlas (--nthreads 9)
[2026-01-08 18:01:01] Arguments: --nthreads 9
[2026-01-08 18:01:01] Threads: 9
[2026-01-08 18:01:01] This job has been restarted, cleaning up previous attempt
[2026-01-08 18:01:01] Checking for CVMFS
[2026-01-08 18:01:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 18:01:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 18:01:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 18:01:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 18:01:05] 2.13.3.0 12257 92553 677856 154922 0 373 30560504 32935937 44181 16776704 0 631194033 99.726 425960387 23369 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 18:01:05] CVMFS is ok
[2026-01-08 18:01:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 18:01:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 18:01:05] Further information can be found at the LHC@home message board.
[2026-01-08 18:01:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 18:01:05] Checking for apptainer binary...
[2026-01-08 18:01:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 18:01:05] Running /usr/bin/apptainer --version
[2026-01-08 18:01:05] apptainer version 1.4.5-2.el9
[2026-01-08 18:01:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 18:01:07] c-1-3.aglt2.org
[2026-01-08 18:01:07] apptainer works
[2026-01-08 18:01:07] Set ATHENA_PROC_NUMBER=9
[2026-01-08 18:01:07] Set ATHENA_CORE_NUMBER=9
[2026-01-08 18:01:07] Starting ATLAS job with PandaID=6962920346
[2026-01-08 18:01:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 15:00:14]  *** The last 200 lines of the pilot log: ***
[2026-01-09 15:00:14] 2026-01-09 19:59:27,462 | INFO     | extracted standard info from prmon json
[2026-01-09 15:00:14] 2026-01-09 19:59:27,462 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 15:00:14] 2026-01-09 19:59:27,462 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 15:00:14] 2026-01-09 19:59:27,463 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 15:00:14] 2026-01-09 19:59:27,463 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 15:00:14] 2026-01-09 19:59:27,619 | INFO     | fitting pss+swap vs Time
[2026-01-09 15:00:14] 2026-01-09 19:59:27,622 | INFO     | sum of square deviations: 579850540917.997
[2026-01-09 15:00:14] 2026-01-09 19:59:27,667 | INFO     | sum of deviations: 694478639198.5585
[2026-01-09 15:00:14] 2026-01-09 19:59:27,667 | INFO     | mean x: 1767951094.9983766
[2026-01-09 15:00:14] 2026-01-09 19:59:27,667 | INFO     | mean y: 2542154.778409091
[2026-01-09 15:00:14] 2026-01-09 19:59:27,667 | INFO     | intersect: -2114907401.585308
[2026-01-09 15:00:14] 2026-01-09 19:59:27,670 | INFO     | chi2: 5.904675439456277
[2026-01-09 15:00:14] 2026-01-09 19:59:27,672 | INFO     | sum of square deviations: 572819864518.7328
[2026-01-09 15:00:14] 2026-01-09 19:59:27,769 | INFO     | sum of deviations: 930203965752.7562
[2026-01-09 15:00:14] 2026-01-09 19:59:27,770 | INFO     | mean x: 1767950942.5036676
[2026-01-09 15:00:14] 2026-01-09 19:59:27,770 | INFO     | mean y: 2547259.165444173
[2026-01-09 15:00:14] 2026-01-09 19:59:27,770 | INFO     | intersect: -2868433794.110255
[2026-01-09 15:00:14] 2026-01-09 19:59:27,772 | INFO     | chi2: 3.8244468640129425
[2026-01-09 15:00:14] 2026-01-09 19:59:27,772 | INFO     | current chi2=3.8244468640129425 (change=35.23019337426765 %)
[2026-01-09 15:00:14] 2026-01-09 19:59:27,792 | INFO     | sum of square deviations: 565845959448.959
[2026-01-09 15:00:14] 2026-01-09 19:59:28,304 | INFO     | sum of deviations: 923946009653.742
[2026-01-09 15:00:14] 2026-01-09 19:59:28,305 | INFO     | mean x: 1767950790.0057282
[2026-01-09 15:00:14] 2026-01-09 19:59:28,305 | INFO     | mean y: 2547122.3224222586
[2026-01-09 15:00:14] 2026-01-09 19:59:28,305 | INFO     | intersect: -2884265181.295908
[2026-01-09 15:00:14] 2026-01-09 19:59:28,307 | INFO     | chi2: 3.8244895251923943
[2026-01-09 15:00:14] 2026-01-09 19:59:28,336 | INFO     | current chi2=3.8244895251923943 (change=-0.001115486264253305 %)
[2026-01-09 15:00:14] 2026-01-09 19:59:28,336 | INFO     | right removable region: 1221
[2026-01-09 15:00:14] 2026-01-09 19:59:28,338 | INFO     | sum of square deviations: 572818813486.7251
[2026-01-09 15:00:14] 2026-01-09 19:59:28,520 | INFO     | monitor loop #2326: job 0:6962920346 is in state 'finished'
[2026-01-09 15:00:14] 2026-01-09 19:59:28,520 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 15:00:14] 2026-01-09 19:59:28,581 | INFO     | sum of deviations: 331812711430.30963
[2026-01-09 15:00:14] 2026-01-09 19:59:28,582 | INFO     | mean x: 1767951247.5044825
[2026-01-09 15:00:14] 2026-01-09 19:59:28,582 | INFO     | mean y: 2550016.76202119
[2026-01-09 15:00:14] 2026-01-09 19:59:28,582 | INFO     | intersect: -1021558625.0967814
[2026-01-09 15:00:14] 2026-01-09 19:59:28,613 | INFO     | chi2: 2.895085809843342
[2026-01-09 15:00:14] 2026-01-09 19:59:28,614 | INFO     | current chi2=2.895085809843342 (change=50.96960299464094 %)
[2026-01-09 15:00:14] 2026-01-09 19:59:28,647 | INFO     | sum of square deviations: 565844456410.9337
[2026-01-09 15:00:14] 2026-01-09 19:59:29,019 | INFO     | sum of deviations: 186986413165.10083
[2026-01-09 15:00:14] 2026-01-09 19:59:29,019 | INFO     | mean x: 1767951400.007365
[2026-01-09 15:00:14] 2026-01-09 19:59:29,020 | INFO     | mean y: 2553182.655482815
[2026-01-09 15:00:14] 2026-01-09 19:59:29,020 | INFO     | intersect: -581676082.4581726
[2026-01-09 15:00:14] 2026-01-09 19:59:29,059 | INFO     | chi2: 2.441460776417054
[2026-01-09 15:00:14] 2026-01-09 19:59:29,059 | INFO     | current chi2=2.441460776417054 (change=15.668794060747876 %)
[2026-01-09 15:00:14] 2026-01-09 19:59:29,059 | INFO     | left removable region: 20
[2026-01-09 15:00:14] 2026-01-09 19:59:29,061 | INFO     | sum of square deviations: 537171194005.4756
[2026-01-09 15:00:14] 2026-01-09 19:59:29,168 | INFO     | time since job start (75424s) is within the limit (174528.0s)
[2026-01-09 15:00:14] 2026-01-09 19:59:29,218 | INFO     | sum of deviations: 253860031046.7297
[2026-01-09 15:00:14] 2026-01-09 19:59:29,223 | INFO     | mean x: 1767951369.5253954
[2026-01-09 15:00:14] 2026-01-09 19:59:29,223 | INFO     | mean y: 2561959.5170691092
[2026-01-09 15:00:14] 2026-01-09 19:59:29,223 | INFO     | intersect: -832948571.5116113
[2026-01-09 15:00:14] 2026-01-09 19:59:29,226 | INFO     | chi2: 0.049471825177458614
[2026-01-09 15:00:14] 2026-01-09 19:59:29,231 | INFO     | current memory leak: 0.47 B/s (using 1201 data points, chi2=0.05)
[2026-01-09 15:00:14] 2026-01-09 19:59:29,233 | INFO     | could have reported an average CPU frequency of 1743 MHz (44 samples)
[2026-01-09 15:00:14] 2026-01-09 19:59:29,233 | INFO     | ..............................
[2026-01-09 15:00:14] 2026-01-09 19:59:29,233 | INFO     | . Timing measurements:
[2026-01-09 15:00:14] 2026-01-09 19:59:29,234 | INFO     | . get job = 0 s
[2026-01-09 15:00:14] 2026-01-09 19:59:29,234 | INFO     | . initial setup = 3 s
[2026-01-09 15:00:14] 2026-01-09 19:59:29,234 | INFO     | . payload setup = 54 s
[2026-01-09 15:00:14] 2026-01-09 19:59:29,234 | INFO     | . stage-in = 0 s
[2026-01-09 15:00:14] 2026-01-09 19:59:29,234 | INFO     | . payload execution = 75198 s
[2026-01-09 15:00:14] 2026-01-09 19:59:29,234 | INFO     | . stage-out = 12 s
[2026-01-09 15:00:14] 2026-01-09 19:59:29,234 | INFO     | . log creation = 5 s
[2026-01-09 15:00:14] 2026-01-09 19:59:29,244 | INFO     | ..............................
[2026-01-09 15:00:14] 2026-01-09 19:59:30,258 | INFO     | 
[2026-01-09 15:00:14] 2026-01-09 19:59:30,258 | INFO     | job summary report
[2026-01-09 15:00:14] 2026-01-09 19:59:30,258 | INFO     | --------------------------------------------------
[2026-01-09 15:00:14] 2026-01-09 19:59:30,258 | INFO     | PanDA job id: 6962920346
[2026-01-09 15:00:14] 2026-01-09 19:59:30,258 | INFO     | task id: 47898826
[2026-01-09 15:00:14] 2026-01-09 19:59:30,259 | INFO     | errors: (none)
[2026-01-09 15:00:14] 2026-01-09 19:59:30,259 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 15:00:14] 2026-01-09 19:59:30,259 | INFO     | pilot state: finished 
[2026-01-09 15:00:14] 2026-01-09 19:59:30,259 | INFO     | transexitcode: 0
[2026-01-09 15:00:14] 2026-01-09 19:59:30,259 | INFO     | exeerrorcode: 0
[2026-01-09 15:00:14] 2026-01-09 19:59:30,259 | INFO     | exeerrordiag: 
[2026-01-09 15:00:14] 2026-01-09 19:59:30,259 | INFO     | exitcode: 0
[2026-01-09 15:00:14] 2026-01-09 19:59:30,259 | INFO     | exitmsg: OK
[2026-01-09 15:00:14] 2026-01-09 19:59:30,259 | INFO     | cpuconsumptiontime: 101595 s
[2026-01-09 15:00:14] 2026-01-09 19:59:30,259 | INFO     | nevents: 400
[2026-01-09 15:00:14] 2026-01-09 19:59:30,260 | INFO     | neventsw: 0
[2026-01-09 15:00:14] 2026-01-09 19:59:30,260 | INFO     | pid: 4142373
[2026-01-09 15:00:14] 2026-01-09 19:59:30,260 | INFO     | pgrp: 4142373
[2026-01-09 15:00:14] 2026-01-09 19:59:30,260 | INFO     | corecount: 9
[2026-01-09 15:00:14] 2026-01-09 19:59:30,260 | INFO     | event service: False
[2026-01-09 15:00:14] 2026-01-09 19:59:30,260 | INFO     | sizes: {0: 2283139, 1: 2283824, 2: 2283824, 3: 2284023, 4: 2284051, 5: 2284079, 16: 2284263, 28: 2284291, 39: 2284319, 46: 2284609, 51: 2284637, 75257: 2337270, 75
[2026-01-09 15:00:14] 2026-01-09 19:59:30,260 | INFO     | --------------------------------------------------
[2026-01-09 15:00:14] 2026-01-09 19:59:30,260 | INFO     | 
[2026-01-09 15:00:14] 2026-01-09 19:59:30,260 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-09 15:00:14] 2026-01-09 19:59:30,356 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,357 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,357 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,357 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,357 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,357 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,357 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,357 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,358 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,358 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,358 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,358 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,358 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,358 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,358 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,358 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,358 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,359 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 15:00:14] 2026-01-09 19:59:30,359 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,359 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 15:00:14] 2026-01-09 19:59:30,359 | INFO     | job 6962920346 has completed (purged errors)
[2026-01-09 15:00:14] 2026-01-09 19:59:30,359 | INFO     | overall cleanup function is called
[2026-01-09 15:00:14] 2026-01-09 19:59:31,375 | INFO     | --- collectZombieJob: --- 10, [4142373]
[2026-01-09 15:00:14] 2026-01-09 19:59:31,375 | INFO     | zombie collector waiting for pid 4142373
[2026-01-09 15:00:14] 2026-01-09 19:59:31,375 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 15:00:14] 2026-01-09 19:59:31,375 | INFO     | collected zombie processes
[2026-01-09 15:00:14] 2026-01-09 19:59:31,376 | INFO     | will attempt to kill all subprocesses of pid=4142373
[2026-01-09 15:00:14] 2026-01-09 19:59:34,499 | INFO     | process IDs to be killed: [4142373] (in reverse order)
[2026-01-09 15:00:14] 2026-01-09 19:59:37,541 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 15:00:14] 2026-01-09 19:59:37,542 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 15:00:14] 2026-01-09 19:59:37,610 | INFO     | did not find any defunct processes belonging to 4142373
[2026-01-09 15:00:14] 2026-01-09 19:59:37,702 | INFO     | did not find any defunct processes belonging to 4142373
[2026-01-09 15:00:14] 2026-01-09 19:59:37,703 | INFO     | ready for new job
[2026-01-09 15:00:14] 2026-01-09 19:59:37,703 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 15:00:14] 2026-01-09 19:59:37,723 | INFO     | ***************************************
[2026-01-09 15:00:14] 2026-01-09 19:59:37,724 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 15:00:14] 2026-01-09 19:59:37,724 | INFO     | ***************************************
[2026-01-09 15:00:14] 2026-01-09 19:59:37,724 | INFO     | 
[2026-01-09 15:00:14] 2026-01-09 19:59:37,755 | INFO     | architecture information:
[2026-01-09 15:00:14] 2026-01-09 19:59:37,764 | INFO     | executing command: cat /etc/os-release
[2026-01-09 15:00:14] 2026-01-09 19:59:37,869 | INFO     | cat /etc/os-release:
[2026-01-09 15:00:14] NAME="CentOS Linux"
[2026-01-09 15:00:14] VERSION="7 (Core)"
[2026-01-09 15:00:14] ID="centos"
[2026-01-09 15:00:14] ID_LIKE="rhel fedora"
[2026-01-09 15:00:14] VERSION_ID="7"
[2026-01-09 15:00:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 15:00:14] ANSI_COLOR="0;31"
[2026-01-09 15:00:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 15:00:14] HOME_URL="https://www.centos.org/"
[2026-01-09 15:00:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 15:00:14] 
[2026-01-09 15:00:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 15:00:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 15:00:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 15:00:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 15:00:14] 
[2026-01-09 15:00:14] 2026-01-09 19:59:37,870 | INFO     | ***************************************
[2026-01-09 15:00:14] 2026-01-09 19:59:38,395 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-09 15:00:14] 2026-01-09 19:59:38,690 | INFO     | sufficient remaining disk space (72718745600 B)
[2026-01-09 15:00:14] 2026-01-09 19:59:38,691 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 15:00:14] 2026-01-09 19:59:38,691 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 15:00:14] 2026-01-09 19:59:38,692 | INFO     | update_server=False
[2026-01-09 15:00:14] 2026-01-09 19:59:38,692 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 15:00:14] 2026-01-09 19:59:38,697 | INFO     | all data control threads have been joined
[2026-01-09 15:00:14] 2026-01-09 19:59:38,711 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 15:00:14] 2026-01-09 19:59:38,894 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 15:00:14] 2026-01-09 19:59:38,894 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 15:00:14] 2026-01-09 19:59:38,894 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:00:14] 2026-01-09 19:59:38,895 | INFO     | will abort loop
[2026-01-09 15:00:14] 2026-01-09 19:59:39,270 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:00:14] 2026-01-09 19:59:39,621 | INFO     | all payload control threads have been joined
[2026-01-09 15:00:14] 2026-01-09 19:59:39,704 | INFO     | [data] control thread has finished
[2026-01-09 15:00:14] 2026-01-09 19:59:39,708 | INFO     | [job] retrieve thread has finished
[2026-01-09 15:00:14] 2026-01-09 19:59:39,755 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 15:00:14] 2026-01-09 19:59:39,768 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 15:00:14] 2026-01-09 19:59:39,793 | INFO     | [job] validate thread has finished
[2026-01-09 15:00:14] 2026-01-09 19:59:39,815 | INFO     | [payload] failed_post thread has finished
[2026-01-09 15:00:14] 2026-01-09 19:59:39,907 | INFO     | [job] job monitor thread has finished
[2026-01-09 15:00:14] 2026-01-09 19:59:39,992 | INFO     | [payload] validate_post thread has finished
[2026-01-09 15:00:14] 2026-01-09 19:59:40,174 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 15:00:14] 2026-01-09 19:59:40,277 | INFO     | [job] queue monitor thread has finished
[2026-01-09 15:00:14] 2026-01-09 19:59:40,340 | INFO     | all job control threads have been joined
[2026-01-09 15:00:14] 2026-01-09 19:59:40,626 | INFO     | [payload] control thread has finished
[2026-01-09 15:00:14] 2026-01-09 19:59:40,703 | INFO     | [data] copytool_in thread has finished
[2026-01-09 15:00:14] 2026-01-09 19:59:40,721 | INFO     | [data] copytool_out thread has finished
[2026-01-09 15:00:14] 2026-01-09 19:59:40,734 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 15:00:14] 2026-01-09 19:59:41,210 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 15:00:14] 2026-01-09 19:59:41,354 | INFO     | [job] control thread has finished
[2026-01-09 15:00:14] 2026-01-09 19:59:44,747 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 15:00:14] 2026-01-09 20:00:06,332 | INFO     | [monitor] cgroup control has ended
[2026-01-09 15:00:14] 2026-01-09 20:00:07,495 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139631442863936)>', '<ExcThread(monitor, started 139630720575232)>']
[2026-01-09 15:00:14] 2026-01-09 20:00:08,528 | INFO     | PID=4112420 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 15:00:14] 2026-01-09 20:00:08,529 | INFO     | .. there are 78 such processes running
[2026-01-09 15:00:14] 2026-01-09 20:00:08,529 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 15:00:14] 2026-01-09 20:00:08,529 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 15:00:14] 2026-01-09 20:00:08,530 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 15:00:14] 2026-01-09 20:00:08,530 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 15:00:14] 2026-01-09 20:00:08,530 | INFO     | [monitor] control thread has ended
[2026-01-09 15:00:14] 2026-01-09 20:00:12,523 | INFO     | all workflow threads have been joined
[2026-01-09 15:00:14] 2026-01-09 20:00:12,523 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 15:00:14] 2026-01-09 20:00:12,523 | INFO     | traces error code: 0
[2026-01-09 15:00:14] 2026-01-09 20:00:12,524 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 15:00:14] 2026-01-09 20:00:12,927 [wrapper] ==== pilot stdout END ====
[2026-01-09 15:00:14] 2026-01-09 20:00:12,943 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 15:00:14] 2026-01-09 20:00:12,959 [wrapper] pilotpid: 4112420
[2026-01-09 15:00:14] 2026-01-09 20:00:12,976 [wrapper] Pilot exit status: 0
[2026-01-09 15:00:14] 2026-01-09 20:00:13,052 [wrapper] pandaids: 6962920346 6962920346
[2026-01-09 15:00:14] 2026-01-09 20:00:13,544 [wrapper] cleanup supervisor_pilot 1133212 4112421
[2026-01-09 15:00:14] 2026-01-09 20:00:13,585 [wrapper] Test setup, not cleaning
[2026-01-09 15:00:14] 2026-01-09 20:00:13,662 [wrapper] apfmon messages muted
[2026-01-09 15:00:14] 2026-01-09 20:00:13,689 [wrapper] ==== wrapper stdout END ====
[2026-01-09 15:00:14] 2026-01-09 20:00:13,714 [wrapper] ==== wrapper stderr END ====
[2026-01-09 15:00:14]  *** Error codes and diagnostics ***
[2026-01-09 15:00:14]     "exeErrorCode": 0,
[2026-01-09 15:00:14]     "exeErrorDiag": "",
[2026-01-09 15:00:14]     "pilotErrorCode": 0,
[2026-01-09 15:00:14]     "pilotErrorDiag": "",
[2026-01-09 15:00:14]  *** Listing of results directory ***
[2026-01-09 15:00:14] total 672096
[2026-01-09 15:00:14] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 15:00:14] -rwx------. 1 boincer umatlas     36322 Jan  8 03:08 runpilot2-wrapper.sh
[2026-01-09 15:00:14] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 03:11 pilot3.tar.gz
[2026-01-09 15:00:14] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:16 queuedata.json
[2026-01-09 15:00:14] -rw-r--r--. 1 boincer umatlas       100 Jan  8 16:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 15:00:14] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 16:13 run_atlas
[2026-01-09 15:00:14] -rw-r--r--. 1 boincer umatlas       105 Jan  8 16:13 job.xml
[2026-01-09 15:00:14] -rw-r--r--. 3 boincer umatlas 225245356 Jan  8 16:13 EVNT.47898824._000844.pool.root.1
[2026-01-09 15:00:14] -rw-r--r--. 3 boincer umatlas 225245356 Jan  8 16:13 ATLAS.root_0
[2026-01-09 15:00:14] -rw-r--r--. 2 boincer umatlas    592401 Jan  8 16:13 input.tar.gz
[2026-01-09 15:00:14] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 16:13 start_atlas.sh
[2026-01-09 15:00:14] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 16:13 shared
[2026-01-09 15:00:14] -rw-r--r--. 1 boincer umatlas         0 Jan  8 16:13 boinc_lockfile
[2026-01-09 15:00:14] -rw-r--r--. 1 boincer umatlas      2518 Jan  8 18:01 pandaJob.out
[2026-01-09 15:00:14] -rw-------. 1 boincer umatlas        57 Jan  8 18:01 setup.sh.local
[2026-01-09 15:00:14] -rw-------. 1 boincer umatlas    989837 Jan  8 18:02 agis_schedconf.cvmfs.json
[2026-01-09 15:00:14] -rw-------. 1 boincer umatlas 219458272 Jan  9 14:54 HITS.47898826._021951.pool.root.1
[2026-01-09 15:00:14] -rw-r--r--. 1 boincer umatlas       532 Jan  9 14:54 boinc_task_state.xml
[2026-01-09 15:00:14] -rw-------. 1 boincer umatlas      1045 Jan  9 14:58 memory_monitor_summary.json
[2026-01-09 15:00:14] -rw-------. 1 boincer umatlas   1516240 Jan  9 14:58 agis_ddmendpoints.agis.ALL.json
[2026-01-09 15:00:14] -rw-------. 1 boincer umatlas   1002508 Jan  9 14:58 log.47898826._021951.job.log.tgz.1
[2026-01-09 15:00:14] -rw-r--r--. 1 boincer umatlas      6840 Jan  9 14:58 init_data.xml
[2026-01-09 15:00:14] -rw-------. 1 boincer umatlas        96 Jan  9 14:59 pilot_heartbeat.json
[2026-01-09 15:00:14] -rw-------. 1 boincer umatlas      7821 Jan  9 14:59 heartbeat.json
[2026-01-09 15:00:14] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 15:00 boinc_mmap_file
[2026-01-09 15:00:14] -rw-r--r--. 1 boincer umatlas        29 Jan  9 15:00 wrapper_checkpoint.txt
[2026-01-09 15:00:14] -rw-------. 1 boincer umatlas      5010 Jan  9 15:00 pilotlog.txt
[2026-01-09 15:00:14] -rw-------. 1 boincer umatlas   6180400 Jan  9 15:00 log.47898826._021951.job.log.1
[2026-01-09 15:00:14] -rw-------. 1 boincer umatlas       357 Jan  9 15:00 output.list
[2026-01-09 15:00:14] -rw-r--r--. 1 boincer umatlas       620 Jan  9 15:00 runtime_log
[2026-01-09 15:00:14] -rw-------. 1 boincer umatlas   7198720 Jan  9 15:00 result.tar.gz
[2026-01-09 15:00:14] -rw-------. 1 boincer umatlas       781 Jan  9 15:00 sY6NDmwE0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBzjKDm7S6RGn.diag
[2026-01-09 15:00:14] -rw-r--r--. 1 boincer umatlas      9413 Jan  9 15:00 runtime_log.err
[2026-01-09 15:00:14] -rw-r--r--. 1 boincer umatlas     23475 Jan  9 15:00 stderr.txt
[2026-01-09 15:00:15] HITS file was successfully produced:
[2026-01-09 15:00:15] -rw-------. 1 boincer umatlas 219458272 Jan  9 14:54 shared/HITS.pool.root.1
[2026-01-09 15:00:15]  *** Contents of shared directory: ***
[2026-01-09 15:00:15] total 441916
[2026-01-09 15:00:15] -rw-r--r--. 3 boincer umatlas 225245356 Jan  8 16:13 ATLAS.root_0
[2026-01-09 15:00:15] -rw-r--r--. 2 boincer umatlas    592401 Jan  8 16:13 input.tar.gz
[2026-01-09 15:00:15] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 16:13 start_atlas.sh
[2026-01-09 15:00:15] -rw-------. 1 boincer umatlas 219458272 Jan  9 14:54 HITS.pool.root.1
[2026-01-09 15:00:15] -rw-------. 1 boincer umatlas   7198720 Jan  9 15:00 result.tar.gz
15:00:17 (4094706): run_atlas exited; CPU time 106888.510465
15:00:17 (4094706): called boinc_finish(0)

</stderr_txt>
]]>

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