Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:55:20 (6747): wrapper (7.7.26015): starting
23:55:20 (6747): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 23:55:20] Arguments: --nthreads 8
[2026-01-08 23:55:20] Threads: 8
[2026-01-08 23:55:20] Checking for CVMFS
[2026-01-08 23:55:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 23:55:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 23:55:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 23:55:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 23:55:24] 2.11.2.0 25293 34585 130664 154922 0 126 13154080 25165824 1088 130560 0 13016160 99.777 9152493 3511 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 23:55:24] CVMFS is ok
[2026-01-08 23:55:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 23:55:24] Checking for apptainer binary...
[2026-01-08 23:55:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 23:55:24] Running /usr/bin/apptainer --version
[2026-01-08 23:55:24] apptainer version 1.3.2-1.el7
[2026-01-08 23:55:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 23:55:40] cg-vwn372.simple-grid.lan
[2026-01-08 23:55:40] apptainer works
[2026-01-08 23:55:41] Set ATHENA_PROC_NUMBER=8
[2026-01-08 23:55:41] Set ATHENA_CORE_NUMBER=8
[2026-01-08 23:55:41] Starting ATLAS job with PandaID=6962920255
[2026-01-08 23:55:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 06:00:54]  *** The last 200 lines of the pilot log: ***
[2026-01-09 06:00:54] 2026-01-09 05:00:21,535 | INFO     | sum of square deviations: 12844082682.5
[2026-01-09 06:00:54] 2026-01-09 05:00:21,539 | INFO     | sum of deviations: 178430072485.49994
[2026-01-09 06:00:54] 2026-01-09 05:00:21,539 | INFO     | mean x: 1767924258.5
[2026-01-09 06:00:54] 2026-01-09 05:00:21,539 | INFO     | mean y: 2448504.9971098267
[2026-01-09 06:00:54] 2026-01-09 05:00:21,540 | INFO     | intersect: -24557565735.86643
[2026-01-09 06:00:54] 2026-01-09 05:00:21,540 | INFO     | chi2: 7.948792065873969
[2026-01-09 06:00:54] 2026-01-09 05:00:21,541 | INFO     | sum of square deviations: 12295263090.0
[2026-01-09 06:00:54] 2026-01-09 05:00:21,545 | INFO     | sum of deviations: 198501731689.0
[2026-01-09 06:00:54] 2026-01-09 05:00:21,545 | INFO     | mean x: 1767924106.0
[2026-01-09 06:00:54] 2026-01-09 05:00:21,545 | INFO     | mean y: 2454007.090909091
[2026-01-09 06:00:54] 2026-01-09 05:00:21,545 | INFO     | intersect: -28539919910.971157
[2026-01-09 06:00:54] 2026-01-09 05:00:21,546 | INFO     | chi2: 7.2202397197167265
[2026-01-09 06:00:54] 2026-01-09 05:00:21,546 | INFO     | current chi2=7.2202397197167265 (change=9.16557308480981 %)
[2026-01-09 06:00:54] 2026-01-09 05:00:21,546 | INFO     | right removable region: 340
[2026-01-09 06:00:54] 2026-01-09 05:00:21,547 | INFO     | sum of square deviations: 12295263090.0
[2026-01-09 06:00:54] 2026-01-09 05:00:21,550 | INFO     | sum of deviations: 57347990390.0
[2026-01-09 06:00:54] 2026-01-09 05:00:21,551 | INFO     | mean x: 1767924411.0
[2026-01-09 06:00:54] 2026-01-09 05:00:21,551 | INFO     | mean y: 2482133.8944281526
[2026-01-09 06:00:54] 2026-01-09 05:00:21,551 | INFO     | intersect: -8243531911.525596
[2026-01-09 06:00:54] 2026-01-09 05:00:21,552 | INFO     | chi2: 3.1314045967155666
[2026-01-09 06:00:54] 2026-01-09 05:00:21,552 | INFO     | current chi2=3.1314045967155666 (change=60.605277245087066 %)
[2026-01-09 06:00:54] 2026-01-09 05:00:21,552 | INFO     | sum of square deviations: 11762304260.0
[2026-01-09 06:00:54] 2026-01-09 05:00:21,556 | INFO     | sum of deviations: -21794016255.000004
[2026-01-09 06:00:54] 2026-01-09 05:00:21,556 | INFO     | mean x: 1767924563.5
[2026-01-09 06:00:54] 2026-01-09 05:00:21,556 | INFO     | mean y: 2504731.5595238097
[2026-01-09 06:00:54] 2026-01-09 05:00:21,557 | INFO     | intersect: 3278238450.2971125
[2026-01-09 06:00:54] 2026-01-09 05:00:21,557 | INFO     | chi2: 1.0350654310769187
[2026-01-09 06:00:54] 2026-01-09 05:00:21,557 | INFO     | current chi2=1.0350654310769187 (change=66.94565013532373 %)
[2026-01-09 06:00:54] 2026-01-09 05:00:21,558 | INFO     | sum of square deviations: 11244973630.0
[2026-01-09 06:00:54] 2026-01-09 05:00:21,562 | INFO     | sum of deviations: -39176197689.0
[2026-01-09 06:00:54] 2026-01-09 05:00:21,562 | INFO     | mean x: 1767924716.0
[2026-01-09 06:00:54] 2026-01-09 05:00:21,562 | INFO     | mean y: 2509840.7915407857
[2026-01-09 06:00:54] 2026-01-09 05:00:21,562 | INFO     | intersect: 6161756669.8377
[2026-01-09 06:00:54] 2026-01-09 05:00:21,563 | INFO     | chi2: 0.9200862658415019
[2026-01-09 06:00:54] 2026-01-09 05:00:21,563 | INFO     | current chi2=0.9200862658415019 (change=11.108395835013875 %)
[2026-01-09 06:00:54] 2026-01-09 05:00:21,564 | INFO     | left removable region: 30
[2026-01-09 06:00:54] 2026-01-09 05:00:21,564 | INFO     | sum of square deviations: 9237596457.5
[2026-01-09 06:00:54] 2026-01-09 05:00:21,567 | INFO     | sum of deviations: -23360246887.000004
[2026-01-09 06:00:54] 2026-01-09 05:00:21,567 | INFO     | mean x: 1767924990.5
[2026-01-09 06:00:54] 2026-01-09 05:00:21,568 | INFO     | mean y: 2518474.1741935485
[2026-01-09 06:00:54] 2026-01-09 05:00:21,568 | INFO     | intersect: 4473287948.223513
[2026-01-09 06:00:54] 2026-01-09 05:00:21,568 | INFO     | chi2: 0.07442271482247924
[2026-01-09 06:00:54] 2026-01-09 05:00:21,569 | INFO     | current memory leak: -2.53 B/s (using 310 data points, chi2=0.07)
[2026-01-09 06:00:54] 2026-01-09 05:00:21,570 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-09 06:00:54] 2026-01-09 05:00:21,570 | INFO     | ..............................
[2026-01-09 06:00:54] 2026-01-09 05:00:21,570 | INFO     | . Timing measurements:
[2026-01-09 06:00:54] 2026-01-09 05:00:21,571 | INFO     | sufficient remaining disk space (497888002048 B)
[2026-01-09 06:00:54] 2026-01-09 05:00:21,571 | INFO     | . get job = 0 s
[2026-01-09 06:00:54] 2026-01-09 05:00:21,572 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-09 06:00:54] 2026-01-09 05:00:21,572 | INFO     | . initial setup = 12 s
[2026-01-09 06:00:54] 2026-01-09 05:00:21,572 | INFO     | . payload setup = 138 s
[2026-01-09 06:00:54] 2026-01-09 05:00:21,572 | INFO     | . stage-in = 0 s
[2026-01-09 06:00:54] 2026-01-09 05:00:21,572 | INFO     | . payload execution = 21248 s
[2026-01-09 06:00:54] 2026-01-09 05:00:21,573 | INFO     | . stage-out = 1 s
[2026-01-09 06:00:54] 2026-01-09 05:00:21,573 | INFO     | . log creation = 0 s
[2026-01-09 06:00:54] 2026-01-09 05:00:21,573 | INFO     | ..............................
[2026-01-09 06:00:54] 2026-01-09 05:00:21,580 | INFO     | size of work directory /var/lib/boinc/slots/11/PanDA_Pilot-6962920255: 3615876 B (within 4404019200 B limit)
[2026-01-09 06:00:54] 2026-01-09 05:00:21,580 | INFO     | pfn file=/var/lib/boinc/slots/11/PanDA_Pilot-6962920255/HITS.47898826._021860.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-09 06:00:54] 2026-01-09 05:00:21,580 | INFO     | total size of present files: 0 B (workdir size: 3615876 B)
[2026-01-09 06:00:54] 2026-01-09 05:00:21,581 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/11/PanDA_Pilot-6962920255/HITS.47898826._021860.pool.root.1 since it does not exist
[2026-01-09 06:00:54] 2026-01-09 05:00:21,705 | INFO     | 
[2026-01-09 06:00:54] 2026-01-09 05:00:21,705 | INFO     | job summary report
[2026-01-09 06:00:54] 2026-01-09 05:00:21,705 | INFO     | --------------------------------------------------
[2026-01-09 06:00:54] 2026-01-09 05:00:21,705 | INFO     | PanDA job id: 6962920255
[2026-01-09 06:00:54] 2026-01-09 05:00:21,706 | INFO     | task id: 47898826
[2026-01-09 06:00:54] 2026-01-09 05:00:21,706 | INFO     | errors: (none)
[2026-01-09 06:00:54] 2026-01-09 05:00:21,706 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 06:00:54] 2026-01-09 05:00:21,706 | INFO     | pilot state: finished 
[2026-01-09 06:00:54] 2026-01-09 05:00:21,706 | INFO     | transexitcode: 0
[2026-01-09 06:00:54] 2026-01-09 05:00:21,706 | INFO     | exeerrorcode: 0
[2026-01-09 06:00:54] 2026-01-09 05:00:21,707 | INFO     | exeerrordiag: 
[2026-01-09 06:00:54] 2026-01-09 05:00:21,707 | INFO     | exitcode: 0
[2026-01-09 06:00:54] 2026-01-09 05:00:21,707 | INFO     | exitmsg: OK
[2026-01-09 06:00:54] 2026-01-09 05:00:21,707 | INFO     | cpuconsumptiontime: 80161 s
[2026-01-09 06:00:54] 2026-01-09 05:00:21,707 | INFO     | nevents: 400
[2026-01-09 06:00:54] 2026-01-09 05:00:21,707 | INFO     | neventsw: 0
[2026-01-09 06:00:54] 2026-01-09 05:00:21,708 | INFO     | pid: 16973
[2026-01-09 06:00:54] 2026-01-09 05:00:21,708 | INFO     | pgrp: 16973
[2026-01-09 06:00:54] 2026-01-09 05:00:21,708 | INFO     | corecount: 8
[2026-01-09 06:00:54] 2026-01-09 05:00:21,708 | INFO     | event service: False
[2026-01-09 06:00:54] 2026-01-09 05:00:21,708 | INFO     | sizes: {0: 2283743, 1: 2283998, 2: 2283998, 12: 2284026, 23: 2284054, 34: 2284082, 44: 2284238, 55: 2284266, 66: 2284294, 77: 2284322, 87: 2284378, 98: 2284686, 10
[2026-01-09 06:00:54] 2026-01-09 05:00:21,708 | INFO     | --------------------------------------------------
[2026-01-09 06:00:54] 2026-01-09 05:00:21,709 | INFO     | 
[2026-01-09 06:00:54] 2026-01-09 05:00:21,709 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-01-09 06:00:54] 2026-01-09 05:00:21,746 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,746 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,746 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,746 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,746 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,747 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,747 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,747 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,747 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,747 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,747 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,747 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,748 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,748 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,748 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,748 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,748 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,748 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 06:00:54] 2026-01-09 05:00:21,749 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,749 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 06:00:54] 2026-01-09 05:00:21,749 | INFO     | job 6962920255 has completed (purged errors)
[2026-01-09 06:00:54] 2026-01-09 05:00:21,749 | INFO     | overall cleanup function is called
[2026-01-09 06:00:54] 2026-01-09 05:00:21,766 | INFO     | number of running child processes to parent process 16973: 1
[2026-01-09 06:00:54] 2026-01-09 05:00:21,766 | INFO     | maximum number of monitored processes: 10
[2026-01-09 06:00:54] 2026-01-09 05:00:21,766 | INFO     | aborting job monitoring since job object (job id=6962920255) has expired
[2026-01-09 06:00:54] 2026-01-09 05:00:22,759 | INFO     | --- collectZombieJob: --- 10, [16973]
[2026-01-09 06:00:54] 2026-01-09 05:00:22,759 | INFO     | zombie collector waiting for pid 16973
[2026-01-09 06:00:54] 2026-01-09 05:00:22,760 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 06:00:54] 2026-01-09 05:00:22,760 | INFO     | collected zombie processes
[2026-01-09 06:00:54] 2026-01-09 05:00:22,760 | INFO     | will attempt to kill all subprocesses of pid=16973
[2026-01-09 06:00:54] 2026-01-09 05:00:22,822 | INFO     | process IDs to be killed: [16973] (in reverse order)
[2026-01-09 06:00:54] 2026-01-09 05:00:22,867 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 06:00:54] 2026-01-09 05:00:22,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 06:00:54] 2026-01-09 05:00:22,869 | INFO     | did not find any defunct processes belonging to 16973
[2026-01-09 06:00:54] 2026-01-09 05:00:22,870 | INFO     | did not find any defunct processes belonging to 16973
[2026-01-09 06:00:54] 2026-01-09 05:00:22,871 | INFO     | ready for new job
[2026-01-09 06:00:54] 2026-01-09 05:00:22,871 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 06:00:54] 2026-01-09 05:00:22,873 | INFO     | ***************************************
[2026-01-09 06:00:54] 2026-01-09 05:00:22,873 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 06:00:54] 2026-01-09 05:00:22,873 | INFO     | ***************************************
[2026-01-09 06:00:54] 2026-01-09 05:00:22,874 | INFO     | 
[2026-01-09 06:00:54] 2026-01-09 05:00:22,874 | INFO     | pilot is running in a VM
[2026-01-09 06:00:54] 2026-01-09 05:00:22,874 | INFO     | architecture information:
[2026-01-09 06:00:54] 2026-01-09 05:00:22,875 | INFO     | executing command: cat /etc/os-release
[2026-01-09 06:00:54] 2026-01-09 05:00:22,892 | INFO     | cat /etc/os-release:
[2026-01-09 06:00:54] NAME="CentOS Linux"
[2026-01-09 06:00:54] VERSION="7 (Core)"
[2026-01-09 06:00:54] ID="centos"
[2026-01-09 06:00:54] ID_LIKE="rhel fedora"
[2026-01-09 06:00:54] VERSION_ID="7"
[2026-01-09 06:00:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 06:00:54] ANSI_COLOR="0;31"
[2026-01-09 06:00:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 06:00:54] HOME_URL="https://www.centos.org/"
[2026-01-09 06:00:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 06:00:54] 
[2026-01-09 06:00:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 06:00:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 06:00:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 06:00:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 06:00:54] 
[2026-01-09 06:00:54] 2026-01-09 05:00:22,892 | INFO     | ***************************************
[2026-01-09 06:00:54] 2026-01-09 05:00:23,395 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-01-09 06:00:54] 2026-01-09 05:00:23,414 | INFO     | sufficient remaining disk space (497895342080 B)
[2026-01-09 06:00:54] 2026-01-09 05:00:23,414 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 06:00:54] 2026-01-09 05:00:23,415 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 06:00:54] 2026-01-09 05:00:23,415 | INFO     | update_server=False
[2026-01-09 06:00:54] 2026-01-09 05:00:23,415 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 06:00:54] 2026-01-09 05:00:23,415 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 06:00:54] 2026-01-09 05:00:23,416 | INFO     | aborting loop
[2026-01-09 06:00:54] 2026-01-09 05:00:23,416 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 06:00:54] 2026-01-09 05:00:23,417 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 06:00:54] 2026-01-09 05:00:23,925 | INFO     | all job control threads have been joined
[2026-01-09 06:00:54] 2026-01-09 05:00:24,310 | INFO     | all payload control threads have been joined
[2026-01-09 06:00:54] 2026-01-09 05:00:24,421 | INFO     | [job] retrieve thread has finished
[2026-01-09 06:00:54] 2026-01-09 05:00:24,421 | INFO     | [job] job monitor thread has finished
[2026-01-09 06:00:54] 2026-01-09 05:00:24,422 | INFO     | [job] queue monitor thread has finished
[2026-01-09 06:00:54] 2026-01-09 05:00:24,430 | INFO     | all data control threads have been joined
[2026-01-09 06:00:54] 2026-01-09 05:00:24,579 | INFO     | [job] validate thread has finished
[2026-01-09 06:00:54] 2026-01-09 05:00:24,588 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 06:00:54] 2026-01-09 05:00:24,623 | INFO     | [payload] validate_post thread has finished
[2026-01-09 06:00:54] 2026-01-09 05:00:24,931 | INFO     | [job] control thread has finished
[2026-01-09 06:00:54] 2026-01-09 05:00:25,239 | INFO     | [data] copytool_in thread has finished
[2026-01-09 06:00:54] 2026-01-09 05:00:25,316 | INFO     | [payload] control thread has finished
[2026-01-09 06:00:54] 2026-01-09 05:00:25,319 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 06:00:54] 2026-01-09 05:00:25,423 | INFO     | [data] copytool_out thread has finished
[2026-01-09 06:00:54] 2026-01-09 05:00:25,436 | INFO     | [data] control thread has finished
[2026-01-09 06:00:54] 2026-01-09 05:00:25,480 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 06:00:54] 2026-01-09 05:00:25,733 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 06:00:54] 2026-01-09 05:00:25,879 | INFO     | [payload] failed_post thread has finished
[2026-01-09 06:00:54] 2026-01-09 05:00:29,740 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 06:00:54] 2026-01-09 05:00:31,275 | INFO     | [monitor] cgroup control has ended
[2026-01-09 06:00:54] 2026-01-09 05:00:33,624 | INFO     | job.realtimelogging is not enabled
[2026-01-09 06:00:54] 2026-01-09 05:00:34,630 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 06:00:54] 2026-01-09 05:00:34,750 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139747132340032)>', '<ExcThread(monitor, started 139746550474496)>']
[2026-01-09 06:00:54] 2026-01-09 05:00:39,775 | INFO     | all workflow threads have been joined
[2026-01-09 06:00:54] 2026-01-09 05:00:39,776 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 06:00:54] 2026-01-09 05:00:39,776 | INFO     | traces error code: 0
[2026-01-09 06:00:54] 2026-01-09 05:00:39,776 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 06:00:54] 2026-01-09 05:00:53,923 | INFO     | PID=10485 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 06:00:54] 2026-01-09 05:00:53,923 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 06:00:54] 2026-01-09 05:00:53,923 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 06:00:54] 2026-01-09 05:00:53,923 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 06:00:54] 2026-01-09 05:00:53,924 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 06:00:54] 2026-01-09 05:00:53,924 | CRITICAL | thread 'MainThread' is not alive
[2026-01-09 06:00:54] 2026-01-09 05:00:53,924 | INFO     | [monitor] control thread has ended
[2026-01-09 06:00:54] 2026-01-09 05:00:54,058 [wrapper] ==== pilot stdout END ====
[2026-01-09 06:00:54] 2026-01-09 05:00:54,063 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 06:00:54] 2026-01-09 05:00:54,067 [wrapper] pilotpid: 10485
[2026-01-09 06:00:54] 2026-01-09 05:00:54,071 [wrapper] Pilot exit status: 0
[2026-01-09 06:00:54] 2026-01-09 05:00:54,086 [wrapper] pandaids: 6962920255
[2026-01-09 06:00:54] 2026-01-09 05:00:54,116 [wrapper] cleanup supervisor_pilot 19678 10486
[2026-01-09 06:00:54] 2026-01-09 05:00:54,120 [wrapper] Test setup, not cleaning
[2026-01-09 06:00:54] 2026-01-09 05:00:54,123 [wrapper] apfmon messages muted
[2026-01-09 06:00:54] 2026-01-09 05:00:54,127 [wrapper] ==== wrapper stdout END ====
[2026-01-09 06:00:54] 2026-01-09 05:00:54,130 [wrapper] ==== wrapper stderr END ====
[2026-01-09 06:00:54]  *** Error codes and diagnostics ***
[2026-01-09 06:00:54]     "exeErrorCode": 0,
[2026-01-09 06:00:54]     "exeErrorDiag": "",
[2026-01-09 06:00:54]     "pilotErrorCode": 0,
[2026-01-09 06:00:54]     "pilotErrorDiag": "",
[2026-01-09 06:00:54]  *** Listing of results directory ***
[2026-01-09 06:00:54] total 445412
[2026-01-09 06:00:54] -rwx------. 1 boinc boinc     36322 Jan  8 09:07 runpilot2-wrapper.sh
[2026-01-09 06:00:54] -rw-r--r--. 1 boinc boinc      5112 Jan  8 09:11 queuedata.json
[2026-01-09 06:00:54] -rw-r--r--. 1 boinc boinc    579449 Jan  8 09:11 pilot3.tar.gz
[2026-01-09 06:00:54] -rw-r--r--. 1 boinc boinc       100 Jan  8 23:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 06:00:54] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 23:55 run_atlas
[2026-01-09 06:00:54] -rw-r--r--. 1 boinc boinc       105 Jan  8 23:55 job.xml
[2026-01-09 06:00:54] -rw-r--r--. 1 boinc boinc      6390 Jan  8 23:55 init_data.xml
[2026-01-09 06:00:54] -rw-r--r--. 2 boinc boinc 226628826 Jan  8 23:55 EVNT.47898824._000830.pool.root.1
[2026-01-09 06:00:54] -rw-r--r--. 2 boinc boinc     15847 Jan  8 23:55 start_atlas.sh
[2026-01-09 06:00:54] drwxrwx--x. 2 boinc boinc        68 Jan  8 23:55 shared
[2026-01-09 06:00:54] -rw-r--r--. 2 boinc boinc    592394 Jan  8 23:55 input.tar.gz
[2026-01-09 06:00:54] -rw-r--r--. 1 boinc boinc         0 Jan  8 23:55 boinc_lockfile
[2026-01-09 06:00:54] -rw-r--r--. 1 boinc boinc      2519 Jan  8 23:55 pandaJob.out
[2026-01-09 06:00:54] -rw-------. 1 boinc boinc    989837 Jan  8 23:59 agis_schedconf.cvmfs.json
[2026-01-09 06:00:54] drwx------. 5 boinc boinc      4096 Jan  8 23:59 pilot3
[2026-01-09 06:00:54] -rw-------. 1 boinc boinc 218690534 Jan  9 05:59 HITS.47898826._021860.pool.root.1
[2026-01-09 06:00:54] -rw-r--r--. 1 boinc boinc       531 Jan  9 05:59 boinc_task_state.xml
[2026-01-09 06:00:54] -rw-------. 1 boinc boinc      1016 Jan  9 06:00 memory_monitor_summary.json
[2026-01-09 06:00:54] -rw-------. 1 boinc boinc        95 Jan  9 06:00 pilot_heartbeat.json
[2026-01-09 06:00:54] -rw-------. 1 boinc boinc   1516240 Jan  9 06:00 agis_ddmendpoints.agis.ALL.json
[2026-01-09 06:00:54] -rw-------. 1 boinc boinc    552408 Jan  9 06:00 log.47898826._021860.job.log.tgz.1
[2026-01-09 06:00:54] -rw-------. 1 boinc boinc      7775 Jan  9 06:00 heartbeat.json
[2026-01-09 06:00:54] -rw-r--r--. 1 boinc boinc      8192 Jan  9 06:00 boinc_mmap_file
[2026-01-09 06:00:54] -rw-r--r--. 1 boinc boinc        28 Jan  9 06:00 wrapper_checkpoint.txt
[2026-01-09 06:00:54] -rw-------. 1 boinc boinc       815 Jan  9 06:00 pilotlog.txt
[2026-01-09 06:00:54] -rw-------. 1 boinc boinc   2893192 Jan  9 06:00 log.47898826._021860.job.log.1
[2026-01-09 06:00:54] -rw-------. 1 boinc boinc       357 Jan  9 06:00 output.list
[2026-01-09 06:00:54] -rw-r--r--. 1 boinc boinc       620 Jan  9 06:00 runtime_log
[2026-01-09 06:00:54] -rw-------. 1 boinc boinc   3461120 Jan  9 06:00 result.tar.gz
[2026-01-09 06:00:54] -rw-r--r--. 1 boinc boinc      8833 Jan  9 06:00 runtime_log.err
[2026-01-09 06:00:54] -rw-------. 1 boinc boinc       657 Jan  9 06:00 623LDmkE0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmxjKDm4dO0Uo.diag
[2026-01-09 06:00:54] -rw-r--r--. 1 boinc boinc     21091 Jan  9 06:00 stderr.txt
[2026-01-09 06:00:54] HITS file was successfully produced:
[2026-01-09 06:00:54] -rw-------. 1 boinc boinc 218690534 Jan  9 05:59 shared/HITS.pool.root.1
[2026-01-09 06:00:54]  *** Contents of shared directory: ***
[2026-01-09 06:00:54] total 438864
[2026-01-09 06:00:54] -rw-r--r--. 2 boinc boinc 226628826 Jan  8 23:55 ATLAS.root_0
[2026-01-09 06:00:54] -rw-r--r--. 2 boinc boinc     15847 Jan  8 23:55 start_atlas.sh
[2026-01-09 06:00:54] -rw-r--r--. 2 boinc boinc    592394 Jan  8 23:55 input.tar.gz
[2026-01-09 06:00:54] -rw-------. 1 boinc boinc 218690534 Jan  9 05:59 HITS.pool.root.1
[2026-01-09 06:00:54] -rw-------. 1 boinc boinc   3461120 Jan  9 06:00 result.tar.gz
06:00:56 (6747): run_atlas exited; CPU time 80380.555585
06:00:56 (6747): called boinc_finish(0)

</stderr_txt>
]]>

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