Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
09:28:45 (2746211): wrapper (7.7.26015): starting
09:28:45 (2746211): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 09:28:45] Arguments: --nthreads 12
[2026-01-09 09:28:45] Threads: 12
[2026-01-09 09:28:45] Checking for CVMFS
[2026-01-09 09:28:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 09:28:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 09:28:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 09:28:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 09:28:46] 2.12.7.0 2330541 1892 64388 154937 2 56 2981968 4096001 0 130560 0 1133406 99.932 75711 43 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-09 09:28:46] CVMFS is ok
[2026-01-09 09:28:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 09:28:46] Checking for apptainer binary...
[2026-01-09 09:28:46] apptainer is not installed, using version from CVMFS
[2026-01-09 09:28:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 09:28:46] lithium
[2026-01-09 09:28:46] apptainer works
[2026-01-09 09:28:46] Set ATHENA_PROC_NUMBER=12
[2026-01-09 09:28:46] Set ATHENA_CORE_NUMBER=12
[2026-01-09 09:28:46] Starting ATLAS job with PandaID=6963144511
[2026-01-09 09:28:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 11:47:15]  *** The last 200 lines of the pilot log: ***
[2026-01-09 11:47:15] 2026-01-09 10:46:24,242 | INFO     | time since job start (8247s) is within the limit (174528.0s)
[2026-01-09 11:47:15] 2026-01-09 10:46:26,073 | INFO     | monitor loop #624: job 0:6963144511 is in state 'finished'
[2026-01-09 11:47:15] 2026-01-09 10:46:26,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 11:47:15] 2026-01-09 10:46:26,248 | INFO     | time since job start (8249s) is within the limit (174528.0s)
[2026-01-09 11:47:15] 2026-01-09 10:46:28,253 | INFO     | time since job start (8251s) is within the limit (174528.0s)
[2026-01-09 11:47:15] 2026-01-09 10:46:28,576 | INFO     | monitor loop #625: job 0:6963144511 is in state 'finished'
[2026-01-09 11:47:15] 2026-01-09 10:46:28,576 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 11:47:15] 2026-01-09 10:46:29,057 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 11:47:15] 2026-01-09 10:46:29,058 | INFO     | found 8 cores (4 cores per socket, 2 sockets) HT, CPU MHz: 2492.88175
[2026-01-09 11:47:15] 2026-01-09 10:46:29,060 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6963144511/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 11:47:15] 2026-01-09 10:46:29,061 | INFO     | extracted standard info from prmon json
[2026-01-09 11:47:15] 2026-01-09 10:46:29,061 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 11:47:15] 2026-01-09 10:46:29,061 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 11:47:15] 2026-01-09 10:46:29,061 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 11:47:15] 2026-01-09 10:46:29,062 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 11:47:15] 2026-01-09 10:46:29,064 | INFO     | fitting pss+swap vs Time
[2026-01-09 11:47:15] 2026-01-09 10:46:29,064 | INFO     | sum of square deviations: 746051197.5
[2026-01-09 11:47:15] 2026-01-09 10:46:29,064 | INFO     | sum of deviations: -23194720306.500004
[2026-01-09 11:47:15] 2026-01-09 10:46:29,065 | INFO     | mean x: 1767951415.5
[2026-01-09 11:47:15] 2026-01-09 10:46:29,065 | INFO     | mean y: 2814173.0970149254
[2026-01-09 11:47:15] 2026-01-09 10:46:29,065 | INFO     | intersect: 54968396609.55344
[2026-01-09 11:47:15] 2026-01-09 10:46:29,065 | INFO     | chi2: 1.5921087444057571
[2026-01-09 11:47:15] 2026-01-09 10:46:29,065 | INFO     | sum of square deviations: 665612480.0
[2026-01-09 11:47:15] 2026-01-09 10:46:29,066 | INFO     | sum of deviations: -21289905849.999992
[2026-01-09 11:47:15] 2026-01-09 10:46:29,066 | INFO     | mean x: 1767951263.0
[2026-01-09 11:47:15] 2026-01-09 10:46:29,066 | INFO     | mean y: 2817786.015503876
[2026-01-09 11:47:15] 2026-01-09 10:46:29,066 | INFO     | intersect: 56551511008.622406
[2026-01-09 11:47:15] 2026-01-09 10:46:29,066 | INFO     | chi2: 1.5891493147002929
[2026-01-09 11:47:15] 2026-01-09 10:46:29,066 | INFO     | current chi2=1.5891493147002929 (change=0.18588112877734625 %)
[2026-01-09 11:47:15] 2026-01-09 10:46:29,067 | INFO     | right removable region: 128
[2026-01-09 11:47:15] 2026-01-09 10:46:29,067 | INFO     | sum of square deviations: 665612480.0
[2026-01-09 11:47:15] 2026-01-09 10:46:29,067 | INFO     | sum of deviations: -42856075514.99999
[2026-01-09 11:47:15] 2026-01-09 10:46:29,067 | INFO     | mean x: 1767951568.0
[2026-01-09 11:47:15] 2026-01-09 10:46:29,067 | INFO     | mean y: 2850677.519379845
[2026-01-09 11:47:15] 2026-01-09 10:46:29,068 | INFO     | intersect: 113834048531.66815
[2026-01-09 11:47:15] 2026-01-09 10:46:29,068 | INFO     | chi2: 0.19905687655166202
[2026-01-09 11:47:15] 2026-01-09 10:46:29,068 | INFO     | current chi2=0.19905687655166202 (change=87.49728137282742 %)
[2026-01-09 11:47:15] 2026-01-09 10:46:29,068 | INFO     | sum of square deviations: 591173875.0
[2026-01-09 11:47:15] 2026-01-09 10:46:29,069 | INFO     | sum of deviations: -38751239694.49999
[2026-01-09 11:47:15] 2026-01-09 10:46:29,069 | INFO     | mean x: 1767951720.5
[2026-01-09 11:47:15] 2026-01-09 10:46:29,069 | INFO     | mean y: 2842243.7661290322
[2026-01-09 11:47:15] 2026-01-09 10:46:29,069 | INFO     | intersect: 115891456045.2457
[2026-01-09 11:47:15] 2026-01-09 10:46:29,069 | INFO     | chi2: 0.198090177484647
[2026-01-09 11:47:15] 2026-01-09 10:46:29,069 | INFO     | current chi2=0.198090177484647 (change=0.48563962409212663 %)
[2026-01-09 11:47:15] 2026-01-09 10:46:29,069 | INFO     | left removable region: 20
[2026-01-09 11:47:15] 2026-01-09 10:46:29,070 | INFO     | sum of square deviations: 390582207.0
[2026-01-09 11:47:15] 2026-01-09 10:46:29,070 | INFO     | sum of deviations: -26609177067.499992
[2026-01-09 11:47:15] 2026-01-09 10:46:29,070 | INFO     | mean x: 1767951842.5
[2026-01-09 11:47:15] 2026-01-09 10:46:29,070 | INFO     | mean y: 2824220.0833333335
[2026-01-09 11:47:15] 2026-01-09 10:46:29,070 | INFO     | intersect: 120448002676.19093
[2026-01-09 11:47:15] 2026-01-09 10:46:29,070 | INFO     | chi2: 0.1845326272906047
[2026-01-09 11:47:15] 2026-01-09 10:46:29,071 | INFO     | current memory leak: -68.13 B/s (using 108 data points, chi2=0.18)
[2026-01-09 11:47:15] 2026-01-09 10:46:29,071 | INFO     | could have reported an average CPU frequency of 2664 MHz (8 samples)
[2026-01-09 11:47:15] 2026-01-09 10:46:29,071 | INFO     | ..............................
[2026-01-09 11:47:15] 2026-01-09 10:46:29,071 | INFO     | . Timing measurements:
[2026-01-09 11:47:15] 2026-01-09 10:46:29,071 | INFO     | . get job = 0 s
[2026-01-09 11:47:15] 2026-01-09 10:46:29,071 | INFO     | . initial setup = 4 s
[2026-01-09 11:47:15] 2026-01-09 10:46:29,071 | INFO     | . payload setup = 4 s
[2026-01-09 11:47:15] 2026-01-09 10:46:29,071 | INFO     | . stage-in = 0 s
[2026-01-09 11:47:15] 2026-01-09 10:46:29,072 | INFO     | . payload execution = 8148 s
[2026-01-09 11:47:15] 2026-01-09 10:46:29,072 | INFO     | . stage-out = 0 s
[2026-01-09 11:47:15] 2026-01-09 10:46:29,072 | INFO     | . log creation = 0 s
[2026-01-09 11:47:15] 2026-01-09 10:46:29,072 | INFO     | ..............................
[2026-01-09 11:47:15] 2026-01-09 10:46:29,146 | INFO     | 
[2026-01-09 11:47:15] 2026-01-09 10:46:29,146 | INFO     | job summary report
[2026-01-09 11:47:15] 2026-01-09 10:46:29,146 | INFO     | --------------------------------------------------
[2026-01-09 11:47:15] 2026-01-09 10:46:29,147 | INFO     | PanDA job id: 6963144511
[2026-01-09 11:47:15] 2026-01-09 10:46:29,147 | INFO     | task id: 47898826
[2026-01-09 11:47:15] 2026-01-09 10:46:29,147 | INFO     | errors: (none)
[2026-01-09 11:47:15] 2026-01-09 10:46:29,147 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 11:47:15] 2026-01-09 10:46:29,147 | INFO     | pilot state: finished 
[2026-01-09 11:47:15] 2026-01-09 10:46:29,147 | INFO     | transexitcode: 0
[2026-01-09 11:47:15] 2026-01-09 10:46:29,147 | INFO     | exeerrorcode: 0
[2026-01-09 11:47:15] 2026-01-09 10:46:29,147 | INFO     | exeerrordiag: 
[2026-01-09 11:47:15] 2026-01-09 10:46:29,147 | INFO     | exitcode: 0
[2026-01-09 11:47:15] 2026-01-09 10:46:29,147 | INFO     | exitmsg: OK
[2026-01-09 11:47:15] 2026-01-09 10:46:29,148 | INFO     | cpuconsumptiontime: 91081 s
[2026-01-09 11:47:15] 2026-01-09 10:46:29,148 | INFO     | nevents: 400
[2026-01-09 11:47:15] 2026-01-09 10:46:29,148 | INFO     | neventsw: 0
[2026-01-09 11:47:15] 2026-01-09 10:46:29,148 | INFO     | pid: 2756606
[2026-01-09 11:47:15] 2026-01-09 10:46:29,148 | INFO     | pgrp: 2756606
[2026-01-09 11:47:15] 2026-01-09 10:46:29,148 | INFO     | corecount: 12
[2026-01-09 11:47:15] 2026-01-09 10:46:29,148 | INFO     | event service: False
[2026-01-09 11:47:15] 2026-01-09 10:46:29,148 | INFO     | sizes: {0: 2283975, 3: 2284237, 11: 2284265, 8156: 2312107, 8157: 2321119, 8160: 2321175, 8237: 2321497}
[2026-01-09 11:47:15] 2026-01-09 10:46:29,148 | INFO     | --------------------------------------------------
[2026-01-09 11:47:15] 2026-01-09 10:46:29,148 | INFO     | 
[2026-01-09 11:47:15] 2026-01-09 10:46:29,149 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2026-01-09 11:47:15] 2026-01-09 10:46:29,167 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,167 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,167 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,168 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,168 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,168 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,168 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,168 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,168 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,168 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,168 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,168 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,169 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,169 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,169 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,169 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,169 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,169 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 11:47:15] 2026-01-09 10:46:29,169 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,169 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 11:47:15] 2026-01-09 10:46:29,169 | INFO     | job 6963144511 has completed (purged errors)
[2026-01-09 11:47:15] 2026-01-09 10:46:29,170 | INFO     | overall cleanup function is called
[2026-01-09 11:47:15] 2026-01-09 10:46:30,177 | INFO     | --- collectZombieJob: --- 10, [2756606]
[2026-01-09 11:47:15] 2026-01-09 10:46:30,177 | INFO     | zombie collector waiting for pid 2756606
[2026-01-09 11:47:15] 2026-01-09 10:46:30,177 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 11:47:15] 2026-01-09 10:46:30,177 | INFO     | collected zombie processes
[2026-01-09 11:47:15] 2026-01-09 10:46:30,177 | INFO     | will attempt to kill all subprocesses of pid=2756606
[2026-01-09 11:47:15] 2026-01-09 10:46:30,252 | INFO     | process IDs to be killed: [2756606] (in reverse order)
[2026-01-09 11:47:15] 2026-01-09 10:46:30,294 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 11:47:15] 2026-01-09 10:46:30,294 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 11:47:15] 2026-01-09 10:46:30,297 | INFO     | did not find any defunct processes belonging to 2756606
[2026-01-09 11:47:15] 2026-01-09 10:46:30,299 | INFO     | did not find any defunct processes belonging to 2756606
[2026-01-09 11:47:15] 2026-01-09 10:46:30,299 | INFO     | ready for new job
[2026-01-09 11:47:15] 2026-01-09 10:46:30,299 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 11:47:15] 2026-01-09 10:46:30,300 | INFO     | ***************************************
[2026-01-09 11:47:15] 2026-01-09 10:46:30,301 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 11:47:15] 2026-01-09 10:46:30,301 | INFO     | ***************************************
[2026-01-09 11:47:15] 2026-01-09 10:46:30,301 | INFO     | 
[2026-01-09 11:47:15] 2026-01-09 10:46:30,322 | INFO     | architecture information:
[2026-01-09 11:47:15] 2026-01-09 10:46:30,323 | INFO     | executing command: cat /etc/os-release
[2026-01-09 11:47:15] 2026-01-09 10:46:30,333 | INFO     | cat /etc/os-release:
[2026-01-09 11:47:15] NAME="CentOS Linux"
[2026-01-09 11:47:15] VERSION="7 (Core)"
[2026-01-09 11:47:15] ID="centos"
[2026-01-09 11:47:15] ID_LIKE="rhel fedora"
[2026-01-09 11:47:15] VERSION_ID="7"
[2026-01-09 11:47:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 11:47:15] ANSI_COLOR="0;31"
[2026-01-09 11:47:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 11:47:15] HOME_URL="https://www.centos.org/"
[2026-01-09 11:47:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 11:47:15] 
[2026-01-09 11:47:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 11:47:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 11:47:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 11:47:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 11:47:15] 
[2026-01-09 11:47:15] 2026-01-09 10:46:30,333 | INFO     | ***************************************
[2026-01-09 11:47:15] 2026-01-09 10:46:30,836 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-01-09 11:47:15] 2026-01-09 10:46:30,848 | INFO     | sufficient remaining disk space (35218522112 B)
[2026-01-09 11:47:15] 2026-01-09 10:46:30,848 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 11:47:15] 2026-01-09 10:46:30,848 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 11:47:15] 2026-01-09 10:46:30,848 | INFO     | update_server=False
[2026-01-09 11:47:15] 2026-01-09 10:46:30,849 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 11:47:15] 2026-01-09 10:46:30,849 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:47:15] 2026-01-09 10:46:31,038 | INFO     | all payload control threads have been joined
[2026-01-09 11:47:15] 2026-01-09 10:46:31,077 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 11:47:15] 2026-01-09 10:46:31,077 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 11:47:15] 2026-01-09 10:46:31,077 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:47:15] 2026-01-09 10:46:31,077 | INFO     | will abort loop
[2026-01-09 11:47:15] 2026-01-09 10:46:31,173 | INFO     | all job control threads have been joined
[2026-01-09 11:47:15] 2026-01-09 10:46:31,560 | INFO     | all data control threads have been joined
[2026-01-09 11:47:15] 2026-01-09 10:46:31,854 | INFO     | [job] retrieve thread has finished
[2026-01-09 11:47:15] 2026-01-09 10:46:31,854 | INFO     | [job] queue monitor thread has finished
[2026-01-09 11:47:15] 2026-01-09 10:46:32,041 | INFO     | [payload] control thread has finished
[2026-01-09 11:47:15] 2026-01-09 10:46:32,062 | INFO     | [payload] validate_post thread has finished
[2026-01-09 11:47:15] 2026-01-09 10:46:32,081 | INFO     | [job] job monitor thread has finished
[2026-01-09 11:47:15] 2026-01-09 10:46:32,178 | INFO     | [job] control thread has finished
[2026-01-09 11:47:15] 2026-01-09 10:46:32,270 | INFO     | [job] validate thread has finished
[2026-01-09 11:47:15] 2026-01-09 10:46:32,291 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 11:47:15] 2026-01-09 10:46:32,553 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 11:47:15] 2026-01-09 10:46:32,566 | INFO     | [data] control thread has finished
[2026-01-09 11:47:15] 2026-01-09 10:46:32,655 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 11:47:15] 2026-01-09 10:46:32,697 | INFO     | [data] copytool_in thread has finished
[2026-01-09 11:47:15] 2026-01-09 10:46:32,799 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 11:47:15] 2026-01-09 10:46:33,113 | INFO     | [payload] failed_post thread has finished
[2026-01-09 11:47:15] 2026-01-09 10:46:34,088 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 11:47:15] 2026-01-09 10:46:34,293 | INFO     | [data] copytool_out thread has finished
[2026-01-09 11:47:15] 2026-01-09 10:46:38,094 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 11:47:15] 2026-01-09 10:46:41,324 | INFO     | job.realtimelogging is not enabled
[2026-01-09 11:47:15] 2026-01-09 10:46:42,329 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 11:47:15] 2026-01-09 10:47:01,451 | INFO     | PID=2750017 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 11:47:15] 2026-01-09 10:47:01,452 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 11:47:15] 2026-01-09 10:47:01,452 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 11:47:15] 2026-01-09 10:47:01,452 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 11:47:15] 2026-01-09 10:47:09,517 | INFO     | [monitor] cgroup control has ended
[2026-01-09 11:47:15] 2026-01-09 10:47:10,522 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140712937285440)>', '<ExcThread(monitor, started 140712490284800)>']
[2026-01-09 11:47:15] 2026-01-09 10:47:11,498 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 11:47:15] 2026-01-09 10:47:11,499 | INFO     | [monitor] control thread has ended
[2026-01-09 11:47:15] 2026-01-09 10:47:15,548 | INFO     | all workflow threads have been joined
[2026-01-09 11:47:15] 2026-01-09 10:47:15,548 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 11:47:15] 2026-01-09 10:47:15,548 | INFO     | traces error code: 0
[2026-01-09 11:47:15] 2026-01-09 10:47:15,548 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 11:47:15] 2026-01-09 10:47:15,634 [wrapper] ==== pilot stdout END ====
[2026-01-09 11:47:15] 2026-01-09 10:47:15,637 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 11:47:15] 2026-01-09 10:47:15,639 [wrapper] pilotpid: 2750017
[2026-01-09 11:47:15] 2026-01-09 10:47:15,641 [wrapper] Pilot exit status: 0
[2026-01-09 11:47:15] 2026-01-09 10:47:15,650 [wrapper] pandaids: 6963144511
[2026-01-09 11:47:15] 2026-01-09 10:47:15,676 [wrapper] cleanup supervisor_pilot 2773271 2750018
[2026-01-09 11:47:15] 2026-01-09 10:47:15,679 [wrapper] Test setup, not cleaning
[2026-01-09 11:47:15] 2026-01-09 10:47:15,681 [wrapper] apfmon messages muted
[2026-01-09 11:47:15] 2026-01-09 10:47:15,684 [wrapper] ==== wrapper stdout END ====
[2026-01-09 11:47:15] 2026-01-09 10:47:15,685 [wrapper] ==== wrapper stderr END ====
[2026-01-09 11:47:15]  *** Error codes and diagnostics ***
[2026-01-09 11:47:15]     "exeErrorCode": 0,
[2026-01-09 11:47:15]     "exeErrorDiag": "",
[2026-01-09 11:47:15]     "pilotErrorCode": 0,
[2026-01-09 11:47:15]     "pilotErrorDiag": "",
[2026-01-09 11:47:15]  *** Listing of results directory ***
[2026-01-09 11:47:15] total 446428
[2026-01-09 11:47:15] -rw-r--r-- 1 boinc boinc    579449 Jan  8 13:19 pilot3.tar.gz
[2026-01-09 11:47:15] -rwx------ 1 boinc boinc     36322 Jan  8 13:23 runpilot2-wrapper.sh
[2026-01-09 11:47:15] -rw-r--r-- 1 boinc boinc      5112 Jan  8 13:24 queuedata.json
[2026-01-09 11:47:15] -rw-r--r-- 1 boinc boinc       100 Jan  9 09:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 11:47:15] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 09:28 run_atlas
[2026-01-09 11:47:15] -rw-r--r-- 1 boinc boinc       105 Jan  9 09:28 job.xml
[2026-01-09 11:47:15] -rw-r--r-- 2 boinc boinc     15847 Jan  9 09:28 start_atlas.sh
[2026-01-09 11:47:15] drwxrwx--x 2 boinc boinc      4096 Jan  9 09:28 shared
[2026-01-09 11:47:15] -rw-r--r-- 2 boinc boinc    592401 Jan  9 09:28 input.tar.gz
[2026-01-09 11:47:15] -rw-r--r-- 1 boinc boinc      6045 Jan  9 09:28 init_data.xml
[2026-01-09 11:47:15] -rw-r--r-- 2 boinc boinc 226430487 Jan  9 09:28 EVNT.47898824._001027.pool.root.1
[2026-01-09 11:47:15] -rw-r--r-- 1 boinc boinc         0 Jan  9 09:28 boinc_lockfile
[2026-01-09 11:47:15] -rw-r--r-- 1 boinc boinc      2518 Jan  9 09:28 pandaJob.out
[2026-01-09 11:47:15] -rw------- 1 boinc boinc    989759 Jan  9 09:28 agis_schedconf.cvmfs.json
[2026-01-09 11:47:15] -rw------- 1 boinc boinc   1516240 Jan  9 09:28 agis_ddmendpoints.agis.ALL.json
[2026-01-09 11:47:15] drwx------ 5 boinc boinc      4096 Jan  9 09:28 pilot3
[2026-01-09 11:47:15] -rw------- 1 boinc boinc 223581702 Jan  9 11:44 HITS.47898826._025638.pool.root.1
[2026-01-09 11:47:15] -rw-r--r-- 1 boinc boinc       529 Jan  9 11:44 boinc_task_state.xml
[2026-01-09 11:47:15] -rw------- 1 boinc boinc      1065 Jan  9 11:45 memory_monitor_summary.json
[2026-01-09 11:47:15] -rw------- 1 boinc boinc    447877 Jan  9 11:45 log.47898826._025638.job.log.tgz.1
[2026-01-09 11:47:15] -rw------- 1 boinc boinc        95 Jan  9 11:46 pilot_heartbeat.json
[2026-01-09 11:47:15] -rw------- 1 boinc boinc      7839 Jan  9 11:46 heartbeat.json
[2026-01-09 11:47:15] -rw-r--r-- 1 boinc boinc        27 Jan  9 11:46 wrapper_checkpoint.txt
[2026-01-09 11:47:15] -rw-r--r-- 1 boinc boinc      8192 Jan  9 11:47 boinc_mmap_file
[2026-01-09 11:47:15] -rw------- 1 boinc boinc      5013 Jan  9 11:47 pilotlog.txt
[2026-01-09 11:47:15] -rw------- 1 boinc boinc   1156631 Jan  9 11:47 log.47898826._025638.job.log.1
[2026-01-09 11:47:15] -rw------- 1 boinc boinc       357 Jan  9 11:47 output.list
[2026-01-09 11:47:15] -rw-r--r-- 1 boinc boinc       620 Jan  9 11:47 runtime_log
[2026-01-09 11:47:15] -rw------- 1 boinc boinc   1628160 Jan  9 11:47 result.tar.gz
[2026-01-09 11:47:15] -rw------- 1 boinc boinc       653 Jan  9 11:47 w6bLDmqD4x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0akKDmQn1AYm.diag
[2026-01-09 11:47:15] -rw-r--r-- 1 boinc boinc      8888 Jan  9 11:47 runtime_log.err
[2026-01-09 11:47:15] -rw-r--r-- 1 boinc boinc     21021 Jan  9 11:47 stderr.txt
[2026-01-09 11:47:15] HITS file was successfully produced:
[2026-01-09 11:47:15] -rw------- 1 boinc boinc 223581702 Jan  9 11:44 shared/HITS.pool.root.1
[2026-01-09 11:47:15]  *** Contents of shared directory: ***
[2026-01-09 11:47:15] total 441664
[2026-01-09 11:47:15] -rw-r--r-- 2 boinc boinc     15847 Jan  9 09:28 start_atlas.sh
[2026-01-09 11:47:15] -rw-r--r-- 2 boinc boinc    592401 Jan  9 09:28 input.tar.gz
[2026-01-09 11:47:15] -rw-r--r-- 2 boinc boinc 226430487 Jan  9 09:28 ATLAS.root_0
[2026-01-09 11:47:15] -rw------- 1 boinc boinc 223581702 Jan  9 11:44 HITS.pool.root.1
[2026-01-09 11:47:15] -rw------- 1 boinc boinc   1628160 Jan  9 11:47 result.tar.gz
11:47:16 (2746211): run_atlas exited; CPU time 90944.657155
11:47:16 (2746211): called boinc_finish(0)

</stderr_txt>
]]>

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