Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:59:00 (22683): wrapper (7.7.26015): starting
23:59:00 (22683): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 23:59:00] Arguments: --nthreads 8
[2026-01-08 23:59:00] Threads: 8
[2026-01-08 23:59:00] Checking for CVMFS
[2026-01-08 23:59:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 23:59:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 23:59:01] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 23:59:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 23:59:02] 2.11.2.0 24263 34606 124896 154922 0 101 14829970 25165824 1088 130560 0 16996604 99.815 10817072 3281 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 23:59:02] CVMFS is ok
[2026-01-08 23:59:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 23:59:02] Checking for apptainer binary...
[2026-01-08 23:59:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 23:59:02] Running /usr/bin/apptainer --version
[2026-01-08 23:59:03] apptainer version 1.3.2-1.el7
[2026-01-08 23:59:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 23:59:19] cg-vwn484.simple-grid.lan
[2026-01-08 23:59:19] apptainer works
[2026-01-08 23:59:19] Set ATHENA_PROC_NUMBER=8
[2026-01-08 23:59:19] Set ATHENA_CORE_NUMBER=8
[2026-01-08 23:59:20] Starting ATLAS job with PandaID=6962919932
[2026-01-08 23:59:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 04:43:26]  *** The last 200 lines of the pilot log: ***
[2026-01-09 04:43:26] 2026-01-09 03:42:14,190 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 04:43:26] 2026-01-09 03:42:14,191 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-09 04:43:26] 2026-01-09 03:42:14,193 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6962919932/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 04:43:26] 2026-01-09 03:42:14,193 | INFO     | extracted standard info from prmon json
[2026-01-09 04:43:26] 2026-01-09 03:42:14,193 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 04:43:26] 2026-01-09 03:42:14,194 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 04:43:26] 2026-01-09 03:42:14,194 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 04:43:26] 2026-01-09 03:42:14,194 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 04:43:26] 2026-01-09 03:42:14,200 | INFO     | fitting pss+swap vs Time
[2026-01-09 04:43:26] 2026-01-09 03:42:14,200 | INFO     | sum of square deviations: 5705372090.0
[2026-01-09 04:43:26] 2026-01-09 03:42:14,203 | INFO     | sum of deviations: 58729713498.5
[2026-01-09 04:43:26] 2026-01-09 03:42:14,203 | INFO     | mean x: 1767921999.5
[2026-01-09 04:43:26] 2026-01-09 03:42:14,203 | INFO     | mean y: 2473696.382575758
[2026-01-09 04:43:26] 2026-01-09 03:42:14,204 | INFO     | intersect: -18196085640.40737
[2026-01-09 04:43:26] 2026-01-09 03:42:14,204 | INFO     | chi2: 7.765646342875609
[2026-01-09 04:43:26] 2026-01-09 03:42:14,205 | INFO     | sum of square deviations: 5387301010.0
[2026-01-09 04:43:26] 2026-01-09 03:42:14,207 | INFO     | sum of deviations: 75226728843.00002
[2026-01-09 04:43:26] 2026-01-09 03:42:14,207 | INFO     | mean x: 1767921847.0
[2026-01-09 04:43:26] 2026-01-09 03:42:14,207 | INFO     | mean y: 2481477.166023166
[2026-01-09 04:43:26] 2026-01-09 03:42:14,208 | INFO     | intersect: -24684273013.258255
[2026-01-09 04:43:26] 2026-01-09 03:42:14,208 | INFO     | chi2: 7.065130996633246
[2026-01-09 04:43:26] 2026-01-09 03:42:14,208 | INFO     | current chi2=7.065130996633246 (change=9.02069596415542 %)
[2026-01-09 04:43:26] 2026-01-09 03:42:14,209 | INFO     | right removable region: 258
[2026-01-09 04:43:26] 2026-01-09 03:42:14,209 | INFO     | sum of square deviations: 5387301010.0
[2026-01-09 04:43:26] 2026-01-09 03:42:14,211 | INFO     | sum of deviations: -35745742031.0
[2026-01-09 04:43:26] 2026-01-09 03:42:14,212 | INFO     | mean x: 1767922152.0
[2026-01-09 04:43:26] 2026-01-09 03:42:14,212 | INFO     | mean y: 2518971.4864864866
[2026-01-09 04:43:26] 2026-01-09 03:42:14,212 | INFO     | intersect: 11733010558.828173
[2026-01-09 04:43:26] 2026-01-09 03:42:14,212 | INFO     | chi2: 2.707992186658915
[2026-01-09 04:43:26] 2026-01-09 03:42:14,213 | INFO     | current chi2=2.707992186658915 (change=65.12856667567289 %)
[2026-01-09 04:43:26] 2026-01-09 03:42:14,213 | INFO     | sum of square deviations: 5081276667.5
[2026-01-09 04:43:26] 2026-01-09 03:42:14,216 | INFO     | sum of deviations: -85440320725.49997
[2026-01-09 04:43:26] 2026-01-09 03:42:14,216 | INFO     | mean x: 1767922304.5
[2026-01-09 04:43:26] 2026-01-09 03:42:14,216 | INFO     | mean y: 2543614.783464567
[2026-01-09 04:43:26] 2026-01-09 03:42:14,216 | INFO     | intersect: 29729688700.265083
[2026-01-09 04:43:26] 2026-01-09 03:42:14,216 | INFO     | chi2: 1.0700796585954446
[2026-01-09 04:43:26] 2026-01-09 03:42:14,217 | INFO     | current chi2=1.0700796585954446 (change=60.48438899243299 %)
[2026-01-09 04:43:26] 2026-01-09 03:42:14,217 | INFO     | sum of square deviations: 4787066500.0
[2026-01-09 04:43:26] 2026-01-09 03:42:14,219 | INFO     | sum of deviations: -87590667319.0
[2026-01-09 04:43:26] 2026-01-09 03:42:14,219 | INFO     | mean x: 1767922457.0
[2026-01-09 04:43:26] 2026-01-09 03:42:14,219 | INFO     | mean y: 2544690.7269076305
[2026-01-09 04:43:26] 2026-01-09 03:42:14,220 | INFO     | intersect: 32350853989.725796
[2026-01-09 04:43:26] 2026-01-09 03:42:14,220 | INFO     | chi2: 1.0259035385328124
[2026-01-09 04:43:26] 2026-01-09 03:42:14,220 | INFO     | current chi2=1.0259035385328124 (change=4.128302010769605 %)
[2026-01-09 04:43:26] 2026-01-09 03:42:14,220 | INFO     | left removable region: 30
[2026-01-09 04:43:26] 2026-01-09 03:42:14,221 | INFO     | sum of square deviations: 3675146117.0
[2026-01-09 04:43:26] 2026-01-09 03:42:14,223 | INFO     | sum of deviations: -48084703477.49999
[2026-01-09 04:43:26] 2026-01-09 03:42:14,223 | INFO     | mean x: 1767922731.5
[2026-01-09 04:43:26] 2026-01-09 03:42:14,223 | INFO     | mean y: 2542148.4692982454
[2026-01-09 04:43:26] 2026-01-09 03:42:14,223 | INFO     | intersect: 23133606222.92371
[2026-01-09 04:43:26] 2026-01-09 03:42:14,224 | INFO     | chi2: 0.22073682300304873
[2026-01-09 04:43:26] 2026-01-09 03:42:14,224 | INFO     | current memory leak: -13.08 B/s (using 228 data points, chi2=0.22)
[2026-01-09 04:43:26] 2026-01-09 03:42:14,224 | INFO     | could have reported an average CPU frequency of 2249 MHz (12 samples)
[2026-01-09 04:43:26] 2026-01-09 03:42:14,225 | INFO     | ..............................
[2026-01-09 04:43:26] 2026-01-09 03:42:14,225 | INFO     | . Timing measurements:
[2026-01-09 04:43:26] 2026-01-09 03:42:14,225 | INFO     | . get job = 0 s
[2026-01-09 04:43:26] 2026-01-09 03:42:14,225 | INFO     | . initial setup = 12 s
[2026-01-09 04:43:26] 2026-01-09 03:42:14,225 | INFO     | . payload setup = 155 s
[2026-01-09 04:43:26] 2026-01-09 03:42:14,225 | INFO     | . stage-in = 0 s
[2026-01-09 04:43:26] 2026-01-09 03:42:14,225 | INFO     | . payload execution = 16220 s
[2026-01-09 04:43:26] 2026-01-09 03:42:14,225 | INFO     | . stage-out = 4 s
[2026-01-09 04:43:26] 2026-01-09 03:42:14,225 | INFO     | . log creation = 1 s
[2026-01-09 04:43:26] 2026-01-09 03:42:14,226 | INFO     | ..............................
[2026-01-09 04:43:26] 2026-01-09 03:42:14,338 | INFO     | 
[2026-01-09 04:43:26] 2026-01-09 03:42:14,338 | INFO     | job summary report
[2026-01-09 04:43:26] 2026-01-09 03:42:14,338 | INFO     | --------------------------------------------------
[2026-01-09 04:43:26] 2026-01-09 03:42:14,338 | INFO     | PanDA job id: 6962919932
[2026-01-09 04:43:26] 2026-01-09 03:42:14,338 | INFO     | task id: 47898826
[2026-01-09 04:43:26] 2026-01-09 03:42:14,338 | INFO     | errors: (none)
[2026-01-09 04:43:26] 2026-01-09 03:42:14,338 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 04:43:26] 2026-01-09 03:42:14,338 | INFO     | pilot state: finished 
[2026-01-09 04:43:26] 2026-01-09 03:42:14,339 | INFO     | transexitcode: 0
[2026-01-09 04:43:26] 2026-01-09 03:42:14,339 | INFO     | exeerrorcode: 0
[2026-01-09 04:43:26] 2026-01-09 03:42:14,339 | INFO     | exeerrordiag: 
[2026-01-09 04:43:26] 2026-01-09 03:42:14,339 | INFO     | exitcode: 0
[2026-01-09 04:43:26] 2026-01-09 03:42:14,339 | INFO     | exitmsg: OK
[2026-01-09 04:43:26] 2026-01-09 03:42:14,339 | INFO     | cpuconsumptiontime: 77860 s
[2026-01-09 04:43:26] 2026-01-09 03:42:14,339 | INFO     | nevents: 400
[2026-01-09 04:43:26] 2026-01-09 03:42:14,339 | INFO     | neventsw: 0
[2026-01-09 04:43:26] 2026-01-09 03:42:14,339 | INFO     | pid: 538
[2026-01-09 04:43:26] 2026-01-09 03:42:14,339 | INFO     | pgrp: 538
[2026-01-09 04:43:26] 2026-01-09 03:42:14,340 | INFO     | corecount: 8
[2026-01-09 04:43:26] 2026-01-09 03:42:14,340 | INFO     | event service: False
[2026-01-09 04:43:26] 2026-01-09 03:42:14,340 | INFO     | sizes: {0: 2283141, 1: 2283998, 12: 2283998, 23: 2284026, 34: 2284054, 44: 2284082, 55: 2284238, 66: 2284266, 77: 2284294, 87: 2284350, 98: 2284378, 109: 2284686, 
[2026-01-09 04:43:26] 2026-01-09 03:42:14,340 | INFO     | --------------------------------------------------
[2026-01-09 04:43:26] 2026-01-09 03:42:14,340 | INFO     | 
[2026-01-09 04:43:26] 2026-01-09 03:42:14,340 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2026-01-09 04:43:26] 2026-01-09 03:42:14,390 | INFO     | time since job start (16708s) is within the limit (174528.0s)
[2026-01-09 04:43:26] 2026-01-09 03:42:14,578 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,578 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,578 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,579 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,579 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,579 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,579 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,579 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,579 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,579 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,579 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,579 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,580 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,580 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,580 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,580 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,580 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,580 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 04:43:26] 2026-01-09 03:42:14,580 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,580 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 04:43:26] 2026-01-09 03:42:14,581 | INFO     | job 6962919932 has completed (purged errors)
[2026-01-09 04:43:26] 2026-01-09 03:42:14,581 | INFO     | overall cleanup function is called
[2026-01-09 04:43:26] 2026-01-09 03:42:15,589 | INFO     | --- collectZombieJob: --- 10, [538]
[2026-01-09 04:43:26] 2026-01-09 03:42:15,590 | INFO     | zombie collector waiting for pid 538
[2026-01-09 04:43:26] 2026-01-09 03:42:15,590 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 04:43:26] 2026-01-09 03:42:15,590 | INFO     | collected zombie processes
[2026-01-09 04:43:26] 2026-01-09 03:42:15,590 | INFO     | will attempt to kill all subprocesses of pid=538
[2026-01-09 04:43:26] 2026-01-09 03:42:15,672 | INFO     | process IDs to be killed: [538] (in reverse order)
[2026-01-09 04:43:26] 2026-01-09 03:42:16,607 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 04:43:26] 2026-01-09 03:42:16,607 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 04:43:26] 2026-01-09 03:42:16,609 | INFO     | did not find any defunct processes belonging to 538
[2026-01-09 04:43:26] 2026-01-09 03:42:16,611 | INFO     | did not find any defunct processes belonging to 538
[2026-01-09 04:43:26] 2026-01-09 03:42:16,612 | INFO     | ready for new job
[2026-01-09 04:43:26] 2026-01-09 03:42:16,612 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 04:43:26] 2026-01-09 03:42:16,614 | INFO     | ***************************************
[2026-01-09 04:43:26] 2026-01-09 03:42:16,614 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 04:43:26] 2026-01-09 03:42:16,614 | INFO     | ***************************************
[2026-01-09 04:43:26] 2026-01-09 03:42:16,614 | INFO     | 
[2026-01-09 04:43:26] 2026-01-09 03:42:16,615 | INFO     | pilot is running in a VM
[2026-01-09 04:43:26] 2026-01-09 03:42:16,615 | INFO     | architecture information:
[2026-01-09 04:43:26] 2026-01-09 03:42:16,618 | INFO     | executing command: cat /etc/os-release
[2026-01-09 04:43:26] 2026-01-09 03:42:16,835 | INFO     | cat /etc/os-release:
[2026-01-09 04:43:26] NAME="CentOS Linux"
[2026-01-09 04:43:26] VERSION="7 (Core)"
[2026-01-09 04:43:26] ID="centos"
[2026-01-09 04:43:26] ID_LIKE="rhel fedora"
[2026-01-09 04:43:26] VERSION_ID="7"
[2026-01-09 04:43:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 04:43:26] ANSI_COLOR="0;31"
[2026-01-09 04:43:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 04:43:26] HOME_URL="https://www.centos.org/"
[2026-01-09 04:43:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 04:43:26] 
[2026-01-09 04:43:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 04:43:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 04:43:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 04:43:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 04:43:26] 
[2026-01-09 04:43:26] 2026-01-09 03:42:16,835 | INFO     | ***************************************
[2026-01-09 04:43:26] 2026-01-09 03:42:17,339 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2026-01-09 04:43:26] 2026-01-09 03:42:17,547 | INFO     | sufficient remaining disk space (497683529728 B)
[2026-01-09 04:43:26] 2026-01-09 03:42:17,547 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 04:43:26] 2026-01-09 03:42:17,547 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 04:43:26] 2026-01-09 03:42:17,548 | INFO     | update_server=False
[2026-01-09 04:43:26] 2026-01-09 03:42:17,548 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 04:43:26] 2026-01-09 03:42:17,550 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 04:43:26] 2026-01-09 03:42:17,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 04:43:26] 2026-01-09 03:42:17,552 | INFO     | aborting loop
[2026-01-09 04:43:26] 2026-01-09 03:42:17,847 | INFO     | all data control threads have been joined
[2026-01-09 04:43:26] 2026-01-09 03:42:18,206 | INFO     | all job control threads have been joined
[2026-01-09 04:43:26] 2026-01-09 03:42:18,554 | INFO     | [job] retrieve thread has finished
[2026-01-09 04:43:26] 2026-01-09 03:42:18,557 | INFO     | [job] job monitor thread has finished
[2026-01-09 04:43:26] 2026-01-09 03:42:18,624 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 04:43:26] 2026-01-09 03:42:18,853 | INFO     | [data] control thread has finished
[2026-01-09 04:43:26] 2026-01-09 03:42:18,908 | INFO     | all payload control threads have been joined
[2026-01-09 04:43:26] 2026-01-09 03:42:18,986 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 04:43:26] 2026-01-09 03:42:18,989 | INFO     | [payload] failed_post thread has finished
[2026-01-09 04:43:26] 2026-01-09 03:42:19,026 | INFO     | [job] validate thread has finished
[2026-01-09 04:43:26] 2026-01-09 03:42:19,212 | INFO     | [job] control thread has finished
[2026-01-09 04:43:26] 2026-01-09 03:42:19,359 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 04:43:26] 2026-01-09 03:42:19,517 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 04:43:26] 2026-01-09 03:42:19,562 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 04:43:26] 2026-01-09 03:42:19,635 | INFO     | [payload] validate_post thread has finished
[2026-01-09 04:43:26] 2026-01-09 03:42:19,763 | INFO     | [data] copytool_in thread has finished
[2026-01-09 04:43:26] 2026-01-09 03:42:19,914 | INFO     | [payload] control thread has finished
[2026-01-09 04:43:26] 2026-01-09 03:42:20,042 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 04:43:26] 2026-01-09 03:42:20,365 | INFO     | [job] queue monitor thread has finished
[2026-01-09 04:43:26] 2026-01-09 03:42:20,631 | INFO     | [data] copytool_out thread has finished
[2026-01-09 04:43:26] 2026-01-09 03:42:21,561 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 04:43:26] 2026-01-09 03:42:47,544 | INFO     | PID=26495 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 04:43:26] 2026-01-09 03:42:47,545 | INFO     | .. there are 2 such processes running
[2026-01-09 04:43:26] 2026-01-09 03:42:47,551 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 04:43:26] 2026-01-09 03:42:47,551 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 04:43:26] 2026-01-09 03:42:47,551 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 04:43:26] 2026-01-09 03:43:13,872 | INFO     | [monitor] cgroup control has ended
[2026-01-09 04:43:26] 2026-01-09 03:43:15,290 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140419281823552)>', '<ExcThread(monitor, started 140418687678208)>']
[2026-01-09 04:43:26] 2026-01-09 03:43:15,720 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 04:43:26] 2026-01-09 03:43:15,721 | INFO     | [monitor] control thread has ended
[2026-01-09 04:43:26] 2026-01-09 03:43:20,316 | INFO     | all workflow threads have been joined
[2026-01-09 04:43:26] 2026-01-09 03:43:20,317 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 04:43:26] 2026-01-09 03:43:20,317 | INFO     | traces error code: 0
[2026-01-09 04:43:26] 2026-01-09 03:43:20,317 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 04:43:26] 2026-01-09 03:43:20,667 [wrapper] ==== pilot stdout END ====
[2026-01-09 04:43:26] 2026-01-09 03:43:20,780 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 04:43:26] 2026-01-09 03:43:20,894 [wrapper] pilotpid: 26495
[2026-01-09 04:43:26] 2026-01-09 03:43:20,952 [wrapper] Pilot exit status: 0
[2026-01-09 04:43:26] 2026-01-09 03:43:21,434 [wrapper] pandaids: 6962919932
[2026-01-09 04:43:26] 2026-01-09 03:43:22,616 [wrapper] cleanup supervisor_pilot 11145 26496
[2026-01-09 04:43:26] 2026-01-09 03:43:22,709 [wrapper] Test setup, not cleaning
[2026-01-09 04:43:26] 2026-01-09 03:43:22,803 [wrapper] apfmon messages muted
[2026-01-09 04:43:26] 2026-01-09 03:43:22,892 [wrapper] ==== wrapper stdout END ====
[2026-01-09 04:43:26] 2026-01-09 03:43:22,978 [wrapper] ==== wrapper stderr END ====
[2026-01-09 04:43:26]  *** Error codes and diagnostics ***
[2026-01-09 04:43:26]     "exeErrorCode": 0,
[2026-01-09 04:43:26]     "exeErrorDiag": "",
[2026-01-09 04:43:26]     "pilotErrorCode": 0,
[2026-01-09 04:43:26]     "pilotErrorDiag": "",
[2026-01-09 04:43:26]  *** Listing of results directory ***
[2026-01-09 04:43:26] total 442592
[2026-01-09 04:43:26] -rwx------. 1 boinc boinc     36322 Jan  8 09:07 runpilot2-wrapper.sh
[2026-01-09 04:43:26] -rw-r--r--. 1 boinc boinc      5112 Jan  8 09:11 queuedata.json
[2026-01-09 04:43:26] -rw-r--r--. 1 boinc boinc    579449 Jan  8 09:11 pilot3.tar.gz
[2026-01-09 04:43:26] -rw-r--r--. 1 boinc boinc       100 Jan  8 23:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 04:43:26] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 23:58 run_atlas
[2026-01-09 04:43:26] -rw-r--r--. 1 boinc boinc       105 Jan  8 23:58 job.xml
[2026-01-09 04:43:26] -rw-r--r--. 2 boinc boinc 223935513 Jan  8 23:59 EVNT.47898824._000819.pool.root.1
[2026-01-09 04:43:26] -rw-r--r--. 2 boinc boinc     15847 Jan  8 23:59 start_atlas.sh
[2026-01-09 04:43:26] drwxrwx--x. 2 boinc boinc        68 Jan  8 23:59 shared
[2026-01-09 04:43:26] -rw-r--r--. 2 boinc boinc    592402 Jan  8 23:59 input.tar.gz
[2026-01-09 04:43:26] -rw-r--r--. 1 boinc boinc      6392 Jan  8 23:59 init_data.xml
[2026-01-09 04:43:26] -rw-r--r--. 1 boinc boinc         0 Jan  8 23:59 boinc_lockfile
[2026-01-09 04:43:26] -rw-r--r--. 1 boinc boinc      2519 Jan  8 23:59 pandaJob.out
[2026-01-09 04:43:26] -rw-------. 1 boinc boinc    989837 Jan  9 00:03 agis_schedconf.cvmfs.json
[2026-01-09 04:43:26] drwx------. 5 boinc boinc      4096 Jan  9 00:03 pilot3
[2026-01-09 04:43:26] -rw-------. 1 boinc boinc 219931782 Jan  9 04:39 HITS.47898826._021666.pool.root.1
[2026-01-09 04:43:26] -rw-r--r--. 1 boinc boinc       531 Jan  9 04:40 boinc_task_state.xml
[2026-01-09 04:43:26] -rw-------. 1 boinc boinc      1021 Jan  9 04:40 memory_monitor_summary.json
[2026-01-09 04:43:26] -rw-------. 1 boinc boinc   1516240 Jan  9 04:40 agis_ddmendpoints.agis.ALL.json
[2026-01-09 04:43:26] -rw-------. 1 boinc boinc    491226 Jan  9 04:40 log.47898826._021666.job.log.tgz.1
[2026-01-09 04:43:26] -rw-------. 1 boinc boinc      7789 Jan  9 04:42 heartbeat.json
[2026-01-09 04:43:26] -rw-------. 1 boinc boinc        95 Jan  9 04:42 pilot_heartbeat.json
[2026-01-09 04:43:26] -rw-r--r--. 1 boinc boinc      8192 Jan  9 04:42 boinc_mmap_file
[2026-01-09 04:43:26] -rw-r--r--. 1 boinc boinc        28 Jan  9 04:42 wrapper_checkpoint.txt
[2026-01-09 04:43:26] -rw-------. 1 boinc boinc      4885 Jan  9 04:43 pilotlog.txt
[2026-01-09 04:43:26] -rw-------. 1 boinc boinc   2234111 Jan  9 04:43 log.47898826._021666.job.log.1
[2026-01-09 04:43:26] -rw-------. 1 boinc boinc       357 Jan  9 04:43 output.list
[2026-01-09 04:43:26] -rw-r--r--. 1 boinc boinc       620 Jan  9 04:43 runtime_log
[2026-01-09 04:43:26] -rw-------. 1 boinc boinc   2744320 Jan  9 04:43 result.tar.gz
[2026-01-09 04:43:26] -rw-------. 1 boinc boinc       657 Jan  9 04:43 UXaMDmXE0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOwjKDmCV05dn.diag
[2026-01-09 04:43:26] -rw-r--r--. 1 boinc boinc      8833 Jan  9 04:43 runtime_log.err
[2026-01-09 04:43:26] -rw-r--r--. 1 boinc boinc     20758 Jan  9 04:43 stderr.txt
[2026-01-09 04:43:26] HITS file was successfully produced:
[2026-01-09 04:43:26] -rw-------. 1 boinc boinc 219931782 Jan  9 04:39 shared/HITS.pool.root.1
[2026-01-09 04:43:26]  *** Contents of shared directory: ***
[2026-01-09 04:43:26] total 436744
[2026-01-09 04:43:26] -rw-r--r--. 2 boinc boinc 223935513 Jan  8 23:59 ATLAS.root_0
[2026-01-09 04:43:26] -rw-r--r--. 2 boinc boinc     15847 Jan  8 23:59 start_atlas.sh
[2026-01-09 04:43:26] -rw-r--r--. 2 boinc boinc    592402 Jan  8 23:59 input.tar.gz
[2026-01-09 04:43:26] -rw-------. 1 boinc boinc 219931782 Jan  9 04:39 HITS.pool.root.1
[2026-01-09 04:43:26] -rw-------. 1 boinc boinc   2744320 Jan  9 04:43 result.tar.gz
04:43:28 (22683): run_atlas exited; CPU time 78020.134176
04:43:28 (22683): called boinc_finish(0)

</stderr_txt>
]]>

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