Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:26:57 (1419924): wrapper (7.7.26015): starting
08:26:57 (1419924): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 08:26:57] Arguments: --nthreads 12
[2026-01-08 08:26:57] Threads: 12
[2026-01-08 08:26:57] Checking for CVMFS
[2026-01-08 08:26:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 08:26:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 08:26:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 08:26:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 08:26:58] 2.11.5.0 4065894 55335 322668 154914 0 96 36695959 45568000 17350 130560 0 387057208 99.781 260577552 23480 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2026-01-08 08:26:58] CVMFS is ok
[2026-01-08 08:26:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 08:26:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 08:26:58] Further information can be found at the LHC@home message board.
[2026-01-08 08:26:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 08:26:58] Checking for apptainer binary...
[2026-01-08 08:26:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 08:26:58] Running /usr/bin/apptainer --version
[2026-01-08 08:26:58] apptainer version 1.4.1-1.el9
[2026-01-08 08:26:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 08:26:58] wns0085.triumf.lcg
[2026-01-08 08:26:58] apptainer works
[2026-01-08 08:26:58] Set ATHENA_PROC_NUMBER=12
[2026-01-08 08:26:58] Set ATHENA_CORE_NUMBER=12
[2026-01-08 08:26:58] Starting ATLAS job with PandaID=6963076989
[2026-01-08 08:26:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 08:32:21]  *** The last 200 lines of the pilot log: ***
[2026-01-08 08:32:21] 2026-01-08 16:31:47,728 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 08:32:21] 2026-01-08 16:31:47,728 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 08:32:21] 2026-01-08 16:31:47,728 | WARNING  | wrong length of table data, x=[1767889675.0, 1767889736.0], y=[1509.0, 373026.0] (must be same and length>=4)
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | could have reported an average CPU frequency of 2751 MHz (4 samples)
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | ..............................
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | . Timing measurements:
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | . get job = 0 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | . initial setup = 3 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | . payload setup = 11 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | . stage-in = 0 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | . payload execution = 109 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | . stage-out = 0 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | . log creation = 0 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | ..............................
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963076989/pilotlog.txt
[2026-01-08 08:32:21] 2026-01-08 16:31:47,741 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-08 08:32:21] - Log from pilotlog.txt -
[2026-01-08 08:32:21] 2026-01-08 16:31:47,727 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6963076989/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 08:32:21] 2026-01-08 16:31:47,728 | INFO     | extracted standard info from prmon json
[2026-01-08 08:32:21] 2026-01-08 16:31:47,728 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 08:32:21] 2026-01-08 16:31:47,728 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 08:32:21] 2026-01-08 16:31:47,728 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 08:32:21] 2026-01-08 16:31:47,728 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 08:32:21] 2026-01-08 16:31:47,728 | WARNING  | wrong length of table data, x=[1767889675.0, 1767889736.0], y=[1509.0, 373026.0] (must be same and length>=4)
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | could have reported an average CPU frequency of 2751 MHz (4 samples)
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | ..............................
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | . Timing measurements:
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | . get job = 0 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | . initial setup = 3 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | . payload setup = 11 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | . stage-in = 0 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | . payload execution = 109 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | . stage-out = 0 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | . log creation = 0 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | ..............................
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963076989/pilotlog.txt
[2026-01-08 08:32:21] 2026-01-08 16:31:47,741 | WARNING  | 
[2026-01-08 08:32:21] [begin log extracts]
[2026-01-08 08:32:21] - Log from pilotlog.txt -
[2026-01-08 08:32:21] 2026-01-08 16:31:47,727 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6963076989/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 08:32:21] 2026-01-08 16:31:47,728 | INFO     | extracted standard info from prmon json
[2026-01-08 08:32:21] 2026-01-08 16:31:47,728 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 08:32:21] 2026-01-08 16:31:47,728 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 08:32:21] 2026-01-08 16:31:47,728 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 08:32:21] 2026-01-08 16:31:47,728 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 08:32:21] 2026-01-08 16:31:47,728 | WARNING  | wrong length of table data, x=[1767889675.0, 1767889736.0], y=[1509.0, 373026.0] (must be same and length>=4)
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | could have reported an average CPU frequency of 2751 MHz (4 samples)
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | ..............................
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | . Timing measurements:
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | . get job = 0 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | . initial setup = 3 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | . payload setup = 11 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,729 | INFO     | . stage-in = 0 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | . payload execution = 109 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | . stage-out = 0 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | . log creation = 0 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | ..............................
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-08 08:32:21] 2026-01-08 16:31:47,730 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963076989/pilotlog.txt
[2026-01-08 08:32:21] [end log extracts]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,741 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2026-01-08 08:32:21] 2026-01-08 16:31:47,742 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-01-08 08:32:21] 2026-01-08 16:31:47,857 | INFO     | 
[2026-01-08 08:32:21] 2026-01-08 16:31:47,857 | INFO     | job summary report
[2026-01-08 08:32:21] 2026-01-08 16:31:47,857 | INFO     | --------------------------------------------------
[2026-01-08 08:32:21] 2026-01-08 16:31:47,858 | INFO     | PanDA job id: 6963076989
[2026-01-08 08:32:21] 2026-01-08 16:31:47,858 | INFO     | task id: 47947082
[2026-01-08 08:32:21] 2026-01-08 16:31:47,858 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-08 08:29:30,565 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-08 08:32:21] 2026-01-08 16:31:47,858 | INFO     | error 2/2: 1165: Local output file is missing
[2026-01-08 08:32:21] 2026-01-08 16:31:47,858 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 08:32:21] 2026-01-08 16:31:47,858 | INFO     | pilot state: failed 
[2026-01-08 08:32:21] 2026-01-08 16:31:47,858 | INFO     | transexitcode: 65
[2026-01-08 08:32:21] 2026-01-08 16:31:47,858 | INFO     | exeerrorcode: 65
[2026-01-08 08:32:21] 2026-01-08 16:31:47,858 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2026-01-08 08:32:21] 2026-01-08 16:31:47,858 | INFO     | exitcode: 65
[2026-01-08 08:32:21] 2026-01-08 16:31:47,858 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2026-01-08 08:32:21] 2026-01-08 16:31:47,859 | INFO     | cpuconsumptiontime: 42 s
[2026-01-08 08:32:21] 2026-01-08 16:31:47,859 | INFO     | nevents: 0
[2026-01-08 08:32:21] 2026-01-08 16:31:47,859 | INFO     | neventsw: 0
[2026-01-08 08:32:21] 2026-01-08 16:31:47,859 | INFO     | pid: 1430201
[2026-01-08 08:32:21] 2026-01-08 16:31:47,859 | INFO     | pgrp: 1430201
[2026-01-08 08:32:21] 2026-01-08 16:31:47,859 | INFO     | corecount: 12
[2026-01-08 08:32:21] 2026-01-08 16:31:47,859 | INFO     | event service: False
[2026-01-08 08:32:21] 2026-01-08 16:31:47,859 | INFO     | sizes: {0: 2284328, 1: 2284527, 7: 2284789, 11: 2284817, 124: 2310251, 125: 2314541, 128: 2314697, 254: 2314891}
[2026-01-08 08:32:21] 2026-01-08 16:31:47,859 | INFO     | --------------------------------------------------
[2026-01-08 08:32:21] 2026-01-08 16:31:47,859 | INFO     | 
[2026-01-08 08:32:21] 2026-01-08 16:31:47,859 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-01-08 08:32:21] 2026-01-08 16:31:47,921 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,921 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,921 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,921 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,921 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | job 6963076989 has completed (purged errors)
[2026-01-08 08:32:21] 2026-01-08 16:31:47,922 | INFO     | overall cleanup function is called
[2026-01-08 08:32:21] 2026-01-08 16:31:48,930 | INFO     | --- collectZombieJob: --- 10, [1430201]
[2026-01-08 08:32:21] 2026-01-08 16:31:48,930 | INFO     | zombie collector waiting for pid 1430201
[2026-01-08 08:32:21] 2026-01-08 16:31:48,930 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 08:32:21] 2026-01-08 16:31:48,931 | INFO     | collected zombie processes
[2026-01-08 08:32:21] 2026-01-08 16:31:48,931 | INFO     | will attempt to kill all subprocesses of pid=1430201
[2026-01-08 08:32:21] 2026-01-08 16:31:49,358 | INFO     | process IDs to be killed: [1430201] (in reverse order)
[2026-01-08 08:32:21] 2026-01-08 16:31:49,424 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 08:32:21] 2026-01-08 16:31:49,424 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 08:32:21] 2026-01-08 16:31:49,431 | INFO     | did not find any defunct processes belonging to 1430201
[2026-01-08 08:32:21] 2026-01-08 16:31:49,439 | INFO     | did not find any defunct processes belonging to 1430201
[2026-01-08 08:32:21] 2026-01-08 16:31:49,439 | INFO     | ready for new job
[2026-01-08 08:32:21] 2026-01-08 16:31:49,440 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 08:32:21] 2026-01-08 16:31:49,441 | INFO     | ***************************************
[2026-01-08 08:32:21] 2026-01-08 16:31:49,441 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 08:32:21] 2026-01-08 16:31:49,441 | INFO     | ***************************************
[2026-01-08 08:32:21] 2026-01-08 16:31:49,441 | INFO     | 
[2026-01-08 08:32:21] 2026-01-08 16:31:49,443 | INFO     | architecture information:
[2026-01-08 08:32:21] 2026-01-08 16:31:49,443 | INFO     | executing command: cat /etc/os-release
[2026-01-08 08:32:21] 2026-01-08 16:31:49,456 | INFO     | cat /etc/os-release:
[2026-01-08 08:32:21] NAME="CentOS Linux"
[2026-01-08 08:32:21] VERSION="7 (Core)"
[2026-01-08 08:32:21] ID="centos"
[2026-01-08 08:32:21] ID_LIKE="rhel fedora"
[2026-01-08 08:32:21] VERSION_ID="7"
[2026-01-08 08:32:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 08:32:21] ANSI_COLOR="0;31"
[2026-01-08 08:32:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 08:32:21] HOME_URL="https://www.centos.org/"
[2026-01-08 08:32:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 08:32:21] 
[2026-01-08 08:32:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 08:32:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 08:32:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 08:32:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 08:32:21] 
[2026-01-08 08:32:21] 2026-01-08 16:31:49,457 | INFO     | ***************************************
[2026-01-08 08:32:21] 2026-01-08 16:31:49,959 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-01-08 08:32:21] 2026-01-08 16:31:49,983 | INFO     | sufficient remaining disk space (1851774730240 B)
[2026-01-08 08:32:21] 2026-01-08 16:31:49,983 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 08:32:21] 2026-01-08 16:31:49,983 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 08:32:21] 2026-01-08 16:31:49,983 | INFO     | update_server=False
[2026-01-08 08:32:21] 2026-01-08 16:31:49,983 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 08:32:21] 2026-01-08 16:31:49,988 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 08:32:21] 2026-01-08 16:31:49,989 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 08:32:21] 2026-01-08 16:31:49,989 | INFO     | aborting loop
[2026-01-08 08:32:21] 2026-01-08 16:31:50,336 | INFO     | all data control threads have been joined
[2026-01-08 08:32:21] 2026-01-08 16:31:50,432 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 08:32:21] 2026-01-08 16:31:50,839 | INFO     | all payload control threads have been joined
[2026-01-08 08:32:21] 2026-01-08 16:31:50,993 | INFO     | [job] retrieve thread has finished
[2026-01-08 08:32:21] 2026-01-08 16:31:50,995 | INFO     | [job] job monitor thread has finished
[2026-01-08 08:32:21] 2026-01-08 16:31:51,088 | INFO     | all job control threads have been joined
[2026-01-08 08:32:21] 2026-01-08 16:31:51,265 | INFO     | [payload] failed_post thread has finished
[2026-01-08 08:32:21] 2026-01-08 16:31:51,342 | INFO     | [data] control thread has finished
[2026-01-08 08:32:21] 2026-01-08 16:31:51,438 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 08:32:21] 2026-01-08 16:31:51,556 | INFO     | [data] copytool_in thread has finished
[2026-01-08 08:32:21] 2026-01-08 16:31:51,678 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 08:32:21] 2026-01-08 16:31:51,846 | INFO     | [payload] control thread has finished
[2026-01-08 08:32:21] 2026-01-08 16:31:51,966 | INFO     | [job] validate thread has finished
[2026-01-08 08:32:21] 2026-01-08 16:31:52,095 | INFO     | [job] control thread has finished
[2026-01-08 08:32:21] 2026-01-08 16:31:52,145 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 08:32:21] 2026-01-08 16:31:52,234 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 08:32:21] 2026-01-08 16:31:52,345 | INFO     | [payload] validate_post thread has finished
[2026-01-08 08:32:21] 2026-01-08 16:31:52,439 | INFO     | [data] copytool_out thread has finished
[2026-01-08 08:32:21] 2026-01-08 16:31:52,820 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 08:32:21] 2026-01-08 16:31:53,825 | INFO     | [job] queue monitor thread has finished
[2026-01-08 08:32:21] 2026-01-08 16:31:53,997 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 08:32:21] 2026-01-08 16:32:15,175 | INFO     | [monitor] cgroup control has ended
[2026-01-08 08:32:21] 2026-01-08 16:32:15,444 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140606268102464)>', '<ExcThread(monitor, started 140605208389376)>']
[2026-01-08 08:32:21] 2026-01-08 16:32:20,470 | INFO     | all workflow threads have been joined
[2026-01-08 08:32:21] 2026-01-08 16:32:20,470 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 08:32:21] 2026-01-08 16:32:20,471 | INFO     | traces error code: 0
[2026-01-08 08:32:21] 2026-01-08 16:32:20,471 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 08:32:21] 2026-01-08 16:32:20,700 | INFO     | PID=1423586 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 08:32:21] 2026-01-08 16:32:20,701 | INFO     | .. there are 28 such processes running
[2026-01-08 08:32:21] 2026-01-08 16:32:20,701 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 08:32:21] 2026-01-08 16:32:20,701 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 08:32:21] 2026-01-08 16:32:20,701 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 08:32:21] 2026-01-08 16:32:20,701 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 08:32:21] 2026-01-08 16:32:20,701 | INFO     | [monitor] control thread has ended
[2026-01-08 08:32:21] 2026-01-08 16:32:20,924 [wrapper] ==== pilot stdout END ====
[2026-01-08 08:32:21] 2026-01-08 16:32:20,928 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 08:32:21] 2026-01-08 16:32:20,936 [wrapper] pilotpid: 1423586
[2026-01-08 08:32:21] 2026-01-08 16:32:20,939 [wrapper] Pilot exit status: 0
[2026-01-08 08:32:21] 2026-01-08 16:32:20,948 [wrapper] pandaids: 6963076989
[2026-01-08 08:32:21] 2026-01-08 16:32:20,991 [wrapper] cleanup supervisor_pilot 1423592 1423587
[2026-01-08 08:32:21] 2026-01-08 16:32:20,993 [wrapper] Test setup, not cleaning
[2026-01-08 08:32:21] 2026-01-08 16:32:20,995 [wrapper] apfmon messages muted
[2026-01-08 08:32:21] 2026-01-08 16:32:20,997 [wrapper] ==== wrapper stdout END ====
[2026-01-08 08:32:21] 2026-01-08 16:32:20,999 [wrapper] ==== wrapper stderr END ====
[2026-01-08 08:32:21]  *** Error codes and diagnostics ***
[2026-01-08 08:32:21]     "exeErrorCode": 65,
[2026-01-08 08:32:21]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2026-01-08 08:32:21]     "pilotErrorCode": 1305,
[2026-01-08 08:32:21]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2026-01-08 08:32:21]  *** Listing of results directory ***
[2026-01-08 08:32:21] total 407696
[2026-01-08 08:32:21] -rw-r--r--. 1 boinc boinc    579449 Jan  8 03:09 pilot3.tar.gz
[2026-01-08 08:32:21] -rwx------. 1 boinc boinc     36322 Jan  8 03:56 runpilot2-wrapper.sh
[2026-01-08 08:32:21] -rw-r--r--. 1 boinc boinc      5112 Jan  8 03:57 queuedata.json
[2026-01-08 08:32:21] -rw-r--r--. 1 boinc boinc       100 Jan  8 08:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 08:32:21] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 08:26 run_atlas
[2026-01-08 08:32:21] -rw-r--r--. 1 boinc boinc       105 Jan  8 08:26 job.xml
[2026-01-08 08:32:21] -rw-r--r--. 1 boinc boinc      6595 Jan  8 08:26 init_data.xml
[2026-01-08 08:32:21] -rw-r--r--. 2 boinc boinc 413284740 Jan  8 08:26 EVNT.47947080._000142.pool.root.1
[2026-01-08 08:32:21] -rw-r--r--. 2 boinc boinc     15847 Jan  8 08:26 start_atlas.sh
[2026-01-08 08:32:21] drwxrwx--x. 2 boinc boinc      4096 Jan  8 08:26 shared
[2026-01-08 08:32:21] -rw-r--r--. 2 boinc boinc    592616 Jan  8 08:26 input.tar.gz
[2026-01-08 08:32:21] -rw-r--r--. 1 boinc boinc         0 Jan  8 08:26 boinc_lockfile
[2026-01-08 08:32:21] -rw-r--r--. 1 boinc boinc      2877 Jan  8 08:26 pandaJob.out
[2026-01-08 08:32:21] -rw-------. 1 boinc boinc    989837 Jan  8 08:27 agis_schedconf.cvmfs.json
[2026-01-08 08:32:21] -rw-------. 1 boinc boinc   1516240 Jan  8 08:27 agis_ddmendpoints.agis.ALL.json
[2026-01-08 08:32:21] drwx------. 5 boinc boinc      4096 Jan  8 08:27 pilot3
[2026-01-08 08:32:21] -rw-r--r--. 1 boinc boinc       524 Jan  8 08:29 boinc_task_state.xml
[2026-01-08 08:32:21] -rw-------. 1 boinc boinc       989 Jan  8 08:29 memory_monitor_summary.json
[2026-01-08 08:32:21] -rw-------. 1 boinc boinc     48962 Jan  8 08:29 log.47947082._005248.job.log.tgz.1
[2026-01-08 08:32:21] -rw-------. 1 boinc boinc     10335 Jan  8 08:31 heartbeat.json
[2026-01-08 08:32:21] -rw-r--r--. 1 boinc boinc      8192 Jan  8 08:32 boinc_mmap_file
[2026-01-08 08:32:21] -rw-r--r--. 1 boinc boinc        23 Jan  8 08:32 wrapper_checkpoint.txt
[2026-01-08 08:32:21] -rw-------. 1 boinc boinc        95 Jan  8 08:32 pilot_heartbeat.json
[2026-01-08 08:32:21] -rw-------. 1 boinc boinc       823 Jan  8 08:32 pilotlog.txt
[2026-01-08 08:32:21] -rw-------. 1 boinc boinc     97926 Jan  8 08:32 log.47947082._005248.job.log.1
[2026-01-08 08:32:21] -rw-------. 1 boinc boinc       186 Jan  8 08:32 output.list
[2026-01-08 08:32:21] -rw-r--r--. 1 boinc boinc       620 Jan  8 08:32 runtime_log
[2026-01-08 08:32:21] -rw-------. 1 boinc boinc    163840 Jan  8 08:32 result.tar.gz
[2026-01-08 08:32:21] -rw-r--r--. 1 boinc boinc      8636 Jan  8 08:32 runtime_log.err
[2026-01-08 08:32:21] -rw-------. 1 boinc boinc       645 Jan  8 08:32 HElKDmOo3x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXVkKDm0p9fgn.diag
[2026-01-08 08:32:21] -rw-r--r--. 1 boinc boinc     22364 Jan  8 08:32 stderr.txt
[2026-01-08 08:32:21] No HITS result produced
[2026-01-08 08:32:21]  *** Contents of shared directory: ***
[2026-01-08 08:32:21] total 404360
[2026-01-08 08:32:21] -rw-r--r--. 2 boinc boinc 413284740 Jan  8 08:26 ATLAS.root_0
[2026-01-08 08:32:21] -rw-r--r--. 2 boinc boinc     15847 Jan  8 08:26 start_atlas.sh
[2026-01-08 08:32:21] -rw-r--r--. 2 boinc boinc    592616 Jan  8 08:26 input.tar.gz
[2026-01-08 08:32:21] -rw-------. 1 boinc boinc    163840 Jan  8 08:32 result.tar.gz
08:32:22 (1419924): run_atlas exited; CPU time 43.358696
08:32:22 (1419924): called boinc_finish(0)

</stderr_txt>
]]>

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