Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:01:23 (363879): wrapper (7.7.26015): starting
11:01:23 (363879): wrapper: running run_atlas (--nthreads 9)
[2026-01-08 11:01:23] Arguments: --nthreads 9
[2026-01-08 11:01:23] Threads: 9
[2026-01-08 11:01:23] Checking for CVMFS
[2026-01-08 11:01:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 11:01:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 11:01:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 11:01:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 11:01:25] 2.13.3.0 6048 92049 347640 154912 1 681 16987443 25181184 24536 16776704 0 559629598 99.620 512812807 27718 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 11:01:25] CVMFS is ok
[2026-01-08 11:01:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 11:01:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 11:01:25] Further information can be found at the LHC@home message board.
[2026-01-08 11:01:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 11:01:25] Checking for apptainer binary...
[2026-01-08 11:01:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 11:01:25] Running /usr/bin/apptainer --version
[2026-01-08 11:01:25] apptainer version 1.4.5-2.el9
[2026-01-08 11:01:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 11:01:27] c-16-35.aglt2.org
[2026-01-08 11:01:27] apptainer works
[2026-01-08 11:01:27] Set ATHENA_PROC_NUMBER=9
[2026-01-08 11:01:27] Set ATHENA_CORE_NUMBER=9
[2026-01-08 11:01:27] Starting ATLAS job with PandaID=6963076980
[2026-01-08 11:01:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 22:08:28]  *** The last 200 lines of the pilot log: ***
[2026-01-08 22:08:28] 2026-01-09 03:07:03,206 | INFO     | PID=377292 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-08 22:08:28] 2026-01-09 03:07:03,206 | INFO     | .. there are 49 such processes running
[2026-01-08 22:08:28] 2026-01-09 03:07:04,207 | INFO     | time since job start (39845s) is within the limit (174528.0s)
[2026-01-08 22:08:28] 2026-01-09 03:07:05,132 | INFO     | monitor loop #1802: job 0:6963076980 is in state 'finished'
[2026-01-08 22:08:28] 2026-01-09 03:07:05,132 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 22:08:28] 2026-01-09 03:07:06,214 | INFO     | time since job start (39847s) is within the limit (174528.0s)
[2026-01-08 22:08:28] 2026-01-09 03:07:07,648 | INFO     | monitor loop #1803: job 0:6963076980 is in state 'finished'
[2026-01-08 22:08:28] 2026-01-09 03:07:07,665 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 22:08:28] 2026-01-09 03:07:08,222 | INFO     | time since job start (39849s) is within the limit (174528.0s)
[2026-01-08 22:08:28] 2026-01-09 03:07:10,174 | INFO     | monitor loop #1804: job 0:6963076980 is in state 'finished'
[2026-01-08 22:08:28] 2026-01-09 03:07:10,174 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 22:08:28] 2026-01-09 03:07:10,228 | INFO     | time since job start (39851s) is within the limit (174528.0s)
[2026-01-08 22:08:28] 2026-01-09 03:07:12,242 | INFO     | time since job start (39853s) is within the limit (174528.0s)
[2026-01-08 22:08:28] 2026-01-09 03:07:12,696 | INFO     | monitor loop #1805: job 0:6963076980 is in state 'finished'
[2026-01-08 22:08:28] 2026-01-09 03:07:12,730 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 22:08:28] 2026-01-09 03:07:14,303 | INFO     | time since job start (39855s) is within the limit (174528.0s)
[2026-01-08 22:08:28] 2026-01-09 03:07:14,764 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 22:08:28] 2026-01-09 03:07:14,849 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2799.6908125000004
[2026-01-08 22:08:28] 2026-01-09 03:07:14,945 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963076980/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 22:08:28] 2026-01-09 03:07:14,946 | INFO     | extracted standard info from prmon json
[2026-01-08 22:08:28] 2026-01-09 03:07:14,946 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 22:08:28] 2026-01-09 03:07:14,946 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 22:08:28] 2026-01-09 03:07:15,043 | INFO     | fitting pss+swap vs Time
[2026-01-08 22:08:28] 2026-01-09 03:07:15,067 | INFO     | sum of square deviations: 85157849970.88625
[2026-01-08 22:08:28] 2026-01-09 03:07:15,134 | INFO     | sum of deviations: -95471992570.02092
[2026-01-08 22:08:28] 2026-01-09 03:07:15,135 | INFO     | mean x: 1767908137.8953846
[2026-01-08 22:08:28] 2026-01-09 03:07:15,135 | INFO     | mean y: 2754786.926153846
[2026-01-08 22:08:28] 2026-01-09 03:07:15,135 | INFO     | intersect: 1984788300.7282534
[2026-01-08 22:08:28] 2026-01-09 03:07:15,136 | INFO     | chi2: 20.5363786783826
[2026-01-08 22:08:28] 2026-01-09 03:07:15,141 | INFO     | sum of square deviations: 83208449275.29614
[2026-01-08 22:08:28] 2026-01-09 03:07:15,193 | INFO     | sum of deviations: 105060244938.67871
[2026-01-08 22:08:28] 2026-01-09 03:07:15,236 | INFO     | mean x: 1767907985.4217055
[2026-01-08 22:08:28] 2026-01-09 03:07:15,236 | INFO     | mean y: 2770473.6372093023
[2026-01-08 22:08:28] 2026-01-09 03:07:15,237 | INFO     | intersect: -2229416853.4326396
[2026-01-08 22:08:28] 2026-01-09 03:07:15,238 | INFO     | chi2: 17.482051570372366
[2026-01-08 22:08:28] 2026-01-09 03:07:15,238 | INFO     | current chi2=17.482051570372366 (change=14.872763868662684 %)
[2026-01-08 22:08:28] 2026-01-09 03:07:15,238 | INFO     | right removable region: 644
[2026-01-08 22:08:28] 2026-01-09 03:07:15,239 | INFO     | sum of square deviations: 83207142417.13803
[2026-01-08 22:08:28] 2026-01-09 03:07:15,317 | INFO     | sum of deviations: -334055549660.14575
[2026-01-08 22:08:28] 2026-01-09 03:07:15,317 | INFO     | mean x: 1767908290.420155
[2026-01-08 22:08:28] 2026-01-09 03:07:15,318 | INFO     | mean y: 2773431.657364341
[2026-01-08 22:08:28] 2026-01-09 03:07:15,318 | INFO     | intersect: 7100476327.69376
[2026-01-08 22:08:28] 2026-01-09 03:07:15,319 | INFO     | chi2: 16.645571653499427
[2026-01-08 22:08:28] 2026-01-09 03:07:15,319 | INFO     | current chi2=16.645571653499427 (change=18.945925597772455 %)
[2026-01-08 22:08:28] 2026-01-09 03:07:15,319 | INFO     | left removable region: 10
[2026-01-08 22:08:28] 2026-01-09 03:07:15,320 | INFO     | sum of square deviations: 79022505673.59608
[2026-01-08 22:08:28] 2026-01-09 03:07:15,359 | INFO     | monitor loop #1806: job 0:6963076980 is in state 'finished'
[2026-01-08 22:08:28] 2026-01-09 03:07:15,359 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 22:08:28] 2026-01-09 03:07:15,374 | INFO     | sum of deviations: -268384312221.89917
[2026-01-08 22:08:28] 2026-01-09 03:07:15,374 | INFO     | mean x: 1767908259.9747634
[2026-01-08 22:08:28] 2026-01-09 03:07:15,374 | INFO     | mean y: 2807532.0063091484
[2026-01-08 22:08:28] 2026-01-09 03:07:15,374 | INFO     | intersect: 6007158297.401993
[2026-01-08 22:08:28] 2026-01-09 03:07:15,375 | INFO     | chi2: 10.578054537033255
[2026-01-08 22:08:28] 2026-01-09 03:07:15,375 | INFO     | current memory leak: -3.40 B/s (using 634 data points, chi2=10.58)
[2026-01-08 22:08:28] 2026-01-09 03:07:15,391 | INFO     | could have reported an average CPU frequency of 2783 MHz (25 samples)
[2026-01-08 22:08:28] 2026-01-09 03:07:15,391 | INFO     | ..............................
[2026-01-08 22:08:28] 2026-01-09 03:07:15,391 | INFO     | . Timing measurements:
[2026-01-08 22:08:28] 2026-01-09 03:07:15,391 | INFO     | . get job = 0 s
[2026-01-08 22:08:28] 2026-01-09 03:07:15,391 | INFO     | . initial setup = 12 s
[2026-01-08 22:08:28] 2026-01-09 03:07:15,391 | INFO     | . payload setup = 51 s
[2026-01-08 22:08:28] 2026-01-09 03:07:15,391 | INFO     | . stage-in = 0 s
[2026-01-08 22:08:28] 2026-01-09 03:07:15,397 | INFO     | . payload execution = 39672 s
[2026-01-08 22:08:28] 2026-01-09 03:07:15,397 | INFO     | . stage-out = 10 s
[2026-01-08 22:08:28] 2026-01-09 03:07:15,397 | INFO     | . log creation = 3 s
[2026-01-08 22:08:28] 2026-01-09 03:07:15,400 | INFO     | ..............................
[2026-01-08 22:08:28] 2026-01-09 03:07:15,791 | INFO     | 
[2026-01-08 22:08:28] 2026-01-09 03:07:15,796 | INFO     | job summary report
[2026-01-08 22:08:28] 2026-01-09 03:07:15,796 | INFO     | --------------------------------------------------
[2026-01-08 22:08:28] 2026-01-09 03:07:15,797 | INFO     | PanDA job id: 6963076980
[2026-01-08 22:08:28] 2026-01-09 03:07:15,797 | INFO     | task id: 47947082
[2026-01-08 22:08:28] 2026-01-09 03:07:15,797 | INFO     | errors: (none)
[2026-01-08 22:08:28] 2026-01-09 03:07:15,797 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 22:08:28] 2026-01-09 03:07:15,797 | INFO     | pilot state: finished 
[2026-01-08 22:08:28] 2026-01-09 03:07:15,797 | INFO     | transexitcode: 0
[2026-01-08 22:08:28] 2026-01-09 03:07:15,797 | INFO     | exeerrorcode: 0
[2026-01-08 22:08:28] 2026-01-09 03:07:15,797 | INFO     | exeerrordiag: 
[2026-01-08 22:08:28] 2026-01-09 03:07:15,797 | INFO     | exitcode: 0
[2026-01-08 22:08:28] 2026-01-09 03:07:15,798 | INFO     | exitmsg: OK
[2026-01-08 22:08:28] 2026-01-09 03:07:15,798 | INFO     | cpuconsumptiontime: 65797 s
[2026-01-08 22:08:28] 2026-01-09 03:07:15,798 | INFO     | nevents: 150
[2026-01-08 22:08:28] 2026-01-09 03:07:15,798 | INFO     | neventsw: 0
[2026-01-08 22:08:28] 2026-01-09 03:07:15,798 | INFO     | pid: 390443
[2026-01-08 22:08:28] 2026-01-09 03:07:15,798 | INFO     | pgrp: 390443
[2026-01-08 22:08:28] 2026-01-09 03:07:15,798 | INFO     | corecount: 9
[2026-01-08 22:08:28] 2026-01-09 03:07:15,798 | INFO     | event service: False
[2026-01-08 22:08:28] 2026-01-09 03:07:15,798 | INFO     | sizes: {0: 2283674, 1: 2284275, 2: 2284359, 3: 2284387, 4: 2284614, 6: 2284614, 17: 2284770, 29: 2284798, 40: 2284826, 42: 2285116, 51: 2285172, 39728: 2327045, 39
[2026-01-08 22:08:28] 2026-01-09 03:07:15,799 | INFO     | --------------------------------------------------
[2026-01-08 22:08:28] 2026-01-09 03:07:15,799 | INFO     | 
[2026-01-08 22:08:28] 2026-01-09 03:07:15,799 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 22:08:28] 2026-01-09 03:07:15,905 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,906 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,906 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,906 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,906 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,906 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,907 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,907 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,907 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,907 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,907 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,907 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,907 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,907 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,908 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,908 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,908 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,908 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 22:08:28] 2026-01-09 03:07:15,908 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,908 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 22:08:28] 2026-01-09 03:07:15,908 | INFO     | job 6963076980 has completed (purged errors)
[2026-01-08 22:08:28] 2026-01-09 03:07:15,909 | INFO     | overall cleanup function is called
[2026-01-08 22:08:28] 2026-01-09 03:07:16,945 | INFO     | --- collectZombieJob: --- 10, [390443]
[2026-01-08 22:08:28] 2026-01-09 03:07:16,945 | INFO     | zombie collector waiting for pid 390443
[2026-01-08 22:08:28] 2026-01-09 03:07:16,945 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 22:08:28] 2026-01-09 03:07:16,946 | INFO     | collected zombie processes
[2026-01-08 22:08:28] 2026-01-09 03:07:16,946 | INFO     | will attempt to kill all subprocesses of pid=390443
[2026-01-08 22:08:28] 2026-01-09 03:07:18,672 | INFO     | process IDs to be killed: [390443] (in reverse order)
[2026-01-08 22:08:28] 2026-01-09 03:07:18,923 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 22:08:28] 2026-01-09 03:07:18,923 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 22:08:28] 2026-01-09 03:07:18,961 | INFO     | did not find any defunct processes belonging to 390443
[2026-01-08 22:08:28] 2026-01-09 03:07:18,997 | INFO     | did not find any defunct processes belonging to 390443
[2026-01-08 22:08:28] 2026-01-09 03:07:18,997 | INFO     | ready for new job
[2026-01-08 22:08:28] 2026-01-09 03:07:18,997 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 22:08:28] 2026-01-09 03:07:19,007 | INFO     | ***************************************
[2026-01-08 22:08:28] 2026-01-09 03:07:19,007 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 22:08:28] 2026-01-09 03:07:19,007 | INFO     | ***************************************
[2026-01-08 22:08:28] 2026-01-09 03:07:19,008 | INFO     | 
[2026-01-08 22:08:28] 2026-01-09 03:07:19,012 | INFO     | architecture information:
[2026-01-08 22:08:28] 2026-01-09 03:07:19,014 | INFO     | executing command: cat /etc/os-release
[2026-01-08 22:08:28] 2026-01-09 03:07:19,154 | INFO     | cat /etc/os-release:
[2026-01-08 22:08:28] NAME="CentOS Linux"
[2026-01-08 22:08:28] VERSION="7 (Core)"
[2026-01-08 22:08:28] ID="centos"
[2026-01-08 22:08:28] ID_LIKE="rhel fedora"
[2026-01-08 22:08:28] VERSION_ID="7"
[2026-01-08 22:08:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 22:08:28] ANSI_COLOR="0;31"
[2026-01-08 22:08:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 22:08:28] HOME_URL="https://www.centos.org/"
[2026-01-08 22:08:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 22:08:28] 
[2026-01-08 22:08:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 22:08:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 22:08:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 22:08:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 22:08:28] 
[2026-01-08 22:08:28] 2026-01-09 03:07:19,155 | INFO     | ***************************************
[2026-01-08 22:08:28] 2026-01-09 03:07:19,658 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 22:08:28] 2026-01-09 03:07:19,815 | INFO     | sufficient remaining disk space (62918754304 B)
[2026-01-08 22:08:28] 2026-01-09 03:07:19,821 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 22:08:28] 2026-01-09 03:07:19,824 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 22:08:28] 2026-01-09 03:07:19,824 | INFO     | update_server=False
[2026-01-08 22:08:28] 2026-01-09 03:07:19,825 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 22:08:28] 2026-01-09 03:07:19,832 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 22:08:28] 2026-01-09 03:07:19,832 | INFO     | aborting loop
[2026-01-08 22:08:28] 2026-01-09 03:07:20,178 | INFO     | all payload control threads have been joined
[2026-01-08 22:08:28] 2026-01-09 03:07:20,178 | INFO     | all data control threads have been joined
[2026-01-08 22:08:28] 2026-01-09 03:07:20,660 | INFO     | all job control threads have been joined
[2026-01-08 22:08:28] 2026-01-09 03:07:20,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 22:08:28] 2026-01-09 03:07:20,821 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 22:08:28] 2026-01-09 03:07:20,837 | INFO     | [job] job monitor thread has finished
[2026-01-08 22:08:28] 2026-01-09 03:07:20,846 | INFO     | [job] retrieve thread has finished
[2026-01-08 22:08:28] 2026-01-09 03:07:21,119 | INFO     | [job] validate thread has finished
[2026-01-08 22:08:28] 2026-01-09 03:07:21,182 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 22:08:28] 2026-01-09 03:07:21,184 | INFO     | [data] control thread has finished
[2026-01-08 22:08:28] 2026-01-09 03:07:21,189 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 22:08:28] 2026-01-09 03:07:21,191 | INFO     | [data] copytool_in thread has finished
[2026-01-08 22:08:28] 2026-01-09 03:07:21,198 | INFO     | [payload] control thread has finished
[2026-01-08 22:08:28] 2026-01-09 03:07:21,667 | INFO     | [job] control thread has finished
[2026-01-08 22:08:28] 2026-01-09 03:07:21,681 | INFO     | [payload] validate_post thread has finished
[2026-01-08 22:08:28] 2026-01-09 03:07:21,682 | INFO     | [payload] failed_post thread has finished
[2026-01-08 22:08:28] 2026-01-09 03:07:21,803 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 22:08:28] 2026-01-09 03:07:21,824 | INFO     | [job] queue monitor thread has finished
[2026-01-08 22:08:28] 2026-01-09 03:07:21,825 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 22:08:28] 2026-01-09 03:07:22,614 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 22:08:28] 2026-01-09 03:07:22,829 | INFO     | [data] copytool_out thread has finished
[2026-01-08 22:08:28] 2026-01-09 03:07:26,624 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 22:08:28] 2026-01-09 03:07:52,068 | INFO     | PID=377292 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-08 22:08:28] 2026-01-09 03:07:52,068 | INFO     | .. there are 49 such processes running
[2026-01-08 22:08:28] 2026-01-09 03:07:52,090 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 22:08:28] 2026-01-09 03:07:52,091 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 22:08:28] 2026-01-09 03:07:52,091 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 22:08:28] 2026-01-09 03:08:19,740 | INFO     | [monitor] cgroup control has ended
[2026-01-08 22:08:28] 2026-01-09 03:08:21,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139852912129856)>', '<ExcThread(monitor, started 139851944929024)>']
[2026-01-08 22:08:28] 2026-01-09 03:08:21,321 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 22:08:28] 2026-01-09 03:08:21,322 | INFO     | [monitor] control thread has ended
[2026-01-08 22:08:28] 2026-01-09 03:08:26,208 | INFO     | all workflow threads have been joined
[2026-01-08 22:08:28] 2026-01-09 03:08:26,208 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 22:08:28] 2026-01-09 03:08:26,209 | INFO     | traces error code: 0
[2026-01-08 22:08:28] 2026-01-09 03:08:26,209 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 22:08:28] 2026-01-09 03:08:26,720 [wrapper] ==== pilot stdout END ====
[2026-01-08 22:08:28] 2026-01-09 03:08:26,749 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 22:08:28] 2026-01-09 03:08:26,762 [wrapper] pilotpid: 377292
[2026-01-08 22:08:28] 2026-01-09 03:08:26,778 [wrapper] Pilot exit status: 0
[2026-01-08 22:08:28] 2026-01-09 03:08:26,969 [wrapper] pandaids: 6963076980
[2026-01-08 22:08:28] 2026-01-09 03:08:27,147 [wrapper] cleanup supervisor_pilot  523253 377293
[2026-01-08 22:08:28] 2026-01-09 03:08:27,151 [wrapper] Test setup, not cleaning
[2026-01-08 22:08:28] 2026-01-09 03:08:27,154 [wrapper] apfmon messages muted
[2026-01-08 22:08:28] 2026-01-09 03:08:27,174 [wrapper] ==== wrapper stdout END ====
[2026-01-08 22:08:28] 2026-01-09 03:08:27,203 [wrapper] ==== wrapper stderr END ====
[2026-01-08 22:08:28]  *** Error codes and diagnostics ***
[2026-01-08 22:08:28]     "exeErrorCode": 0,
[2026-01-08 22:08:28]     "exeErrorDiag": "",
[2026-01-08 22:08:28]     "pilotErrorCode": 0,
[2026-01-08 22:08:28]     "pilotErrorDiag": "",
[2026-01-08 22:08:28]  *** Listing of results directory ***
[2026-01-08 22:08:28] total 559480
[2026-01-08 22:08:28] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 06:09 pilot3.tar.gz
[2026-01-08 22:08:28] -rwx------. 1 boincer umatlas     36322 Jan  8 06:56 runpilot2-wrapper.sh
[2026-01-08 22:08:28] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 06:57 queuedata.json
[2026-01-08 22:08:28] -rw-r--r--. 1 boincer umatlas       100 Jan  8 11:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 22:08:28] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 11:01 run_atlas
[2026-01-08 22:08:28] -rw-r--r--. 1 boincer umatlas       105 Jan  8 11:01 job.xml
[2026-01-08 22:08:28] -rw-r--r--. 2 boincer umatlas 413284740 Jan  8 11:01 EVNT.47947080._000142.pool.root.1
[2026-01-08 22:08:28] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 11:01 start_atlas.sh
[2026-01-08 22:08:28] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 11:01 shared
[2026-01-08 22:08:28] -rw-r--r--. 2 boincer umatlas    592612 Jan  8 11:01 input.tar.gz
[2026-01-08 22:08:28] -rw-r--r--. 1 boincer umatlas         0 Jan  8 11:01 boinc_lockfile
[2026-01-08 22:08:28] -rw-r--r--. 1 boincer umatlas      2877 Jan  8 11:01 pandaJob.out
[2026-01-08 22:08:28] -rw-------. 1 boincer umatlas        57 Jan  8 11:01 setup.sh.local
[2026-01-08 22:08:28] -rw-------. 1 boincer umatlas    989843 Jan  8 11:02 agis_schedconf.cvmfs.json
[2026-01-08 22:08:28] drwx------. 5 boincer umatlas      4096 Jan  8 11:02 pilot3
[2026-01-08 22:08:28] -rw-r--r--. 1 boincer umatlas       531 Jan  8 21:11 boinc_task_state.xml
[2026-01-08 22:08:28] -rw-r--r--. 1 boincer umatlas      6613 Jan  8 22:04 init_data.xml
[2026-01-08 22:08:28] -rw-------. 1 boincer umatlas 143793969 Jan  8 22:05 HITS.47947082._005239.pool.root.1
[2026-01-08 22:08:28] -rw-------. 1 boincer umatlas      1072 Jan  8 22:06 memory_monitor_summary.json
[2026-01-08 22:08:28] -rw-------. 1 boincer umatlas   1516240 Jan  8 22:06 agis_ddmendpoints.agis.ALL.json
[2026-01-08 22:08:28] -rw-------. 1 boincer umatlas   1720735 Jan  8 22:06 log.47947082._005239.job.log.tgz.1
[2026-01-08 22:08:28] -rw-------. 1 boincer umatlas      8650 Jan  8 22:07 heartbeat.json
[2026-01-08 22:08:28] -rw-------. 1 boincer umatlas        95 Jan  8 22:07 pilot_heartbeat.json
[2026-01-08 22:08:28] -rw-r--r--. 1 boincer umatlas      8192 Jan  8 22:08 boinc_mmap_file
[2026-01-08 22:08:28] -rw-r--r--. 1 boincer umatlas        28 Jan  8 22:08 wrapper_checkpoint.txt
[2026-01-08 22:08:28] -rw-------. 1 boincer umatlas      4823 Jan  8 22:08 pilotlog.txt
[2026-01-08 22:08:28] -rw-------. 1 boincer umatlas   4232423 Jan  8 22:08 log.47947082._005239.job.log.1
[2026-01-08 22:08:28] -rw-------. 1 boincer umatlas       353 Jan  8 22:08 output.list
[2026-01-08 22:08:28] -rw-r--r--. 1 boincer umatlas       620 Jan  8 22:08 runtime_log
[2026-01-08 22:08:28] -rw-------. 1 boincer umatlas   5969920 Jan  8 22:08 result.tar.gz
[2026-01-08 22:08:28] -rw-r--r--. 1 boincer umatlas      9338 Jan  8 22:08 runtime_log.err
[2026-01-08 22:08:28] -rw-------. 1 boincer umatlas       662 Jan  8 22:08 BeaKDmOo3x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOVkKDmrxkpGo.diag
[2026-01-08 22:08:28] -rw-r--r--. 1 boincer umatlas     21783 Jan  8 22:08 stderr.txt
[2026-01-08 22:08:28] HITS file was successfully produced:
[2026-01-08 22:08:28] -rw-------. 1 boincer umatlas 143793969 Jan  8 22:05 shared/HITS.pool.root.1
[2026-01-08 22:08:28]  *** Contents of shared directory: ***
[2026-01-08 22:08:28] total 550460
[2026-01-08 22:08:28] -rw-r--r--. 2 boincer umatlas 413284740 Jan  8 11:01 ATLAS.root_0
[2026-01-08 22:08:28] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 11:01 start_atlas.sh
[2026-01-08 22:08:28] -rw-r--r--. 2 boincer umatlas    592612 Jan  8 11:01 input.tar.gz
[2026-01-08 22:08:28] -rw-------. 1 boincer umatlas 143793969 Jan  8 22:05 HITS.pool.root.1
[2026-01-08 22:08:28] -rw-------. 1 boincer umatlas   5969920 Jan  8 22:08 result.tar.gz
22:08:29 (363879): run_atlas exited; CPU time 67215.689687
22:08:29 (363879): called boinc_finish(0)

</stderr_txt>
]]>

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