Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:11:55 (562660): wrapper (7.7.26015): starting
17:11:55 (562660): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 17:11:55] Arguments: --nthreads 8
[2026-01-08 17:11:55] Threads: 8
[2026-01-08 17:11:55] Checking for CVMFS
[2026-01-08 17:11:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 17:11:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 17:11:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 17:12:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 17:12:18] 2.13.3.0 4306 89476 362172 154920 1 596 27550904 32935937 26358 16776704 0 411065518 99.693 320574883 32530 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 17:12:18] CVMFS is ok
[2026-01-08 17:12:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 17:12:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 17:12:18] Further information can be found at the LHC@home message board.
[2026-01-08 17:12:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 17:12:18] Checking for apptainer binary...
[2026-01-08 17:12:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 17:12:18] Running /usr/bin/apptainer --version
[2026-01-08 17:12:18] apptainer version 1.4.5-2.el9
[2026-01-08 17:12:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 17:12:20] c-6-4.aglt2.org
[2026-01-08 17:12:20] apptainer works
[2026-01-08 17:12:20] Set ATHENA_PROC_NUMBER=8
[2026-01-08 17:12:20] Set ATHENA_CORE_NUMBER=8
[2026-01-08 17:12:20] Starting ATLAS job with PandaID=6962919818
[2026-01-08 17:12:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:39:59 (3867902): wrapper (7.7.26015): starting
15:39:59 (3867902): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 15:39:59] Arguments: --nthreads 12
[2026-01-09 15:39:59] Threads: 12
[2026-01-09 15:39:59] This job has been restarted, cleaning up previous attempt
[2026-01-09 15:39:59] Checking for CVMFS
[2026-01-09 15:40:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:40:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:40:01] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:40:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:40:02] 2.13.3.0 4306 90824 342584 154956 0 290 24861845 32935937 23784 16776704 0 421050381 99.697 323721845 32517 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 15:40:02] CVMFS is ok
[2026-01-09 15:40:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:40:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:40:02] Further information can be found at the LHC@home message board.
[2026-01-09 15:40:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:40:02] Checking for apptainer binary...
[2026-01-09 15:40:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:40:02] Running /usr/bin/apptainer --version
[2026-01-09 15:40:03] apptainer version 1.4.5-2.el9
[2026-01-09 15:40:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:40:04] c-6-4.aglt2.org
[2026-01-09 15:40:04] apptainer works
[2026-01-09 15:40:04] Set ATHENA_PROC_NUMBER=12
[2026-01-09 15:40:04] Set ATHENA_CORE_NUMBER=12
[2026-01-09 15:40:04] Starting ATLAS job with PandaID=6962919818
[2026-01-09 15:40:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:59:57]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:59:57] 2026-01-10 04:59:08,005 | INFO     | monitor loop #1483: job 0:6962919818 is in state 'finished'
[2026-01-09 23:59:57] 2026-01-10 04:59:08,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:59:57] 2026-01-10 04:59:08,446 | INFO     | time since job start (29895s) is within the limit (174528.0s)
[2026-01-09 23:59:57] 2026-01-10 04:59:10,453 | INFO     | time since job start (29897s) is within the limit (174528.0s)
[2026-01-09 23:59:57] 2026-01-10 04:59:10,520 | INFO     | monitor loop #1484: job 0:6962919818 is in state 'finished'
[2026-01-09 23:59:57] 2026-01-10 04:59:10,520 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:59:57] 2026-01-10 04:59:12,526 | INFO     | PID=3880402 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 23:59:57] 2026-01-10 04:59:12,526 | INFO     | .. there are 40 such processes running
[2026-01-09 23:59:57] 2026-01-10 04:59:12,841 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 23:59:57] 2026-01-10 04:59:12,852 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8035499999996
[2026-01-09 23:59:57] 2026-01-10 04:59:12,867 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6962919818/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 23:59:57] 2026-01-10 04:59:12,868 | INFO     | extracted standard info from prmon json
[2026-01-09 23:59:57] 2026-01-10 04:59:12,868 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 23:59:57] 2026-01-10 04:59:12,868 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 23:59:57] 2026-01-10 04:59:12,874 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 23:59:57] 2026-01-10 04:59:12,874 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 23:59:57] 2026-01-10 04:59:12,883 | INFO     | fitting pss+swap vs Time
[2026-01-09 23:59:57] 2026-01-10 04:59:12,884 | INFO     | sum of square deviations: 36258791685.30466
[2026-01-09 23:59:57] 2026-01-10 04:59:12,890 | INFO     | sum of deviations: 14874371270.719902
[2026-01-09 23:59:57] 2026-01-10 04:59:12,890 | INFO     | mean x: 1768006225.210634
[2026-01-09 23:59:57] 2026-01-10 04:59:12,890 | INFO     | mean y: 2720027.3231083844
[2026-01-09 23:59:57] 2026-01-10 04:59:12,890 | INFO     | intersect: -722565614.5970914
[2026-01-09 23:59:57] 2026-01-10 04:59:12,891 | INFO     | chi2: 3.0570913668472572
[2026-01-09 23:59:57] 2026-01-10 04:59:12,892 | INFO     | sum of square deviations: 35157946887.0806
[2026-01-09 23:59:57] 2026-01-10 04:59:12,898 | INFO     | sum of deviations: 48474511128.04344
[2026-01-09 23:59:57] 2026-01-10 04:59:12,899 | INFO     | mean x: 1768006072.7128098
[2026-01-09 23:59:57] 2026-01-10 04:59:12,899 | INFO     | mean y: 2724643.4607438017
[2026-01-09 23:59:57] 2026-01-10 04:59:12,899 | INFO     | intersect: -2434938463.5865746
[2026-01-09 23:59:57] 2026-01-10 04:59:12,900 | INFO     | chi2: 2.359039954402457
[2026-01-09 23:59:57] 2026-01-10 04:59:12,900 | INFO     | current chi2=2.359039954402457 (change=22.83384199814389 %)
[2026-01-09 23:59:57] 2026-01-10 04:59:12,900 | INFO     | right removable region: 483
[2026-01-09 23:59:57] 2026-01-10 04:59:12,901 | INFO     | sum of square deviations: 35157734662.90089
[2026-01-09 23:59:57] 2026-01-10 04:59:12,907 | INFO     | sum of deviations: -92980207639.99591
[2026-01-09 23:59:57] 2026-01-10 04:59:12,907 | INFO     | mean x: 1768006377.7231405
[2026-01-09 23:59:57] 2026-01-10 04:59:12,908 | INFO     | mean y: 2734917.865702479
[2026-01-09 23:59:57] 2026-01-10 04:59:12,908 | INFO     | intersect: 4678508305.592008
[2026-01-09 23:59:57] 2026-01-10 04:59:12,909 | INFO     | chi2: 1.1144516214655584
[2026-01-09 23:59:57] 2026-01-10 04:59:12,909 | INFO     | current chi2=1.1144516214655584 (change=63.54536100715631 %)
[2026-01-09 23:59:57] 2026-01-10 04:59:12,909 | INFO     | sum of square deviations: 34079189690.3422
[2026-01-09 23:59:57] 2026-01-10 04:59:12,916 | INFO     | sum of deviations: -105083383250.94154
[2026-01-09 23:59:57] 2026-01-10 04:59:12,916 | INFO     | mean x: 1768006530.235908
[2026-01-09 23:59:57] 2026-01-10 04:59:12,916 | INFO     | mean y: 2736625.6012526094
[2026-01-09 23:59:57] 2026-01-10 04:59:12,916 | INFO     | intersect: 5454395232.953595
[2026-01-09 23:59:57] 2026-01-10 04:59:12,917 | INFO     | chi2: 1.0823761771007643
[2026-01-09 23:59:57] 2026-01-10 04:59:12,917 | INFO     | current chi2=1.0823761771007643 (change=2.878136991053355 %)
[2026-01-09 23:59:57] 2026-01-10 04:59:12,918 | INFO     | left removable region: 20
[2026-01-09 23:59:57] 2026-01-10 04:59:12,918 | INFO     | sum of square deviations: 30776824012.89839
[2026-01-09 23:59:57] 2026-01-10 04:59:12,924 | INFO     | sum of deviations: -32069757064.41027
[2026-01-09 23:59:57] 2026-01-10 04:59:12,924 | INFO     | mean x: 1768006652.2591794
[2026-01-09 23:59:57] 2026-01-10 04:59:12,925 | INFO     | mean y: 2735704.920086393
[2026-01-09 23:59:57] 2026-01-10 04:59:12,925 | INFO     | intersect: 1845016240.509162
[2026-01-09 23:59:57] 2026-01-10 04:59:12,925 | INFO     | chi2: 0.2722464467661908
[2026-01-09 23:59:57] 2026-01-10 04:59:12,926 | INFO     | current memory leak: -1.04 B/s (using 463 data points, chi2=0.27)
[2026-01-09 23:59:57] 2026-01-10 04:59:12,926 | INFO     | could have reported an average CPU frequency of 2599 MHz (20 samples)
[2026-01-09 23:59:57] 2026-01-10 04:59:12,927 | INFO     | ..............................
[2026-01-09 23:59:57] 2026-01-10 04:59:12,927 | INFO     | . Timing measurements:
[2026-01-09 23:59:57] 2026-01-10 04:59:12,927 | INFO     | . get job = 0 s
[2026-01-09 23:59:57] 2026-01-10 04:59:12,927 | INFO     | . initial setup = 5 s
[2026-01-09 23:59:57] 2026-01-10 04:59:12,927 | INFO     | . payload setup = 21 s
[2026-01-09 23:59:57] 2026-01-10 04:59:12,927 | INFO     | . stage-in = 0 s
[2026-01-09 23:59:57] 2026-01-10 04:59:12,927 | INFO     | . payload execution = 29804 s
[2026-01-09 23:59:57] 2026-01-10 04:59:12,928 | INFO     | . stage-out = 3 s
[2026-01-09 23:59:57] 2026-01-10 04:59:12,928 | INFO     | . log creation = 0 s
[2026-01-09 23:59:57] 2026-01-10 04:59:12,928 | INFO     | ..............................
[2026-01-09 23:59:57] 2026-01-10 04:59:13,057 | INFO     | 
[2026-01-09 23:59:57] 2026-01-10 04:59:13,061 | INFO     | job summary report
[2026-01-09 23:59:57] 2026-01-10 04:59:13,061 | INFO     | --------------------------------------------------
[2026-01-09 23:59:57] 2026-01-10 04:59:13,061 | INFO     | PanDA job id: 6962919818
[2026-01-09 23:59:57] 2026-01-10 04:59:13,061 | INFO     | task id: 47898826
[2026-01-09 23:59:57] 2026-01-10 04:59:13,061 | INFO     | errors: (none)
[2026-01-09 23:59:57] 2026-01-10 04:59:13,061 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 23:59:57] 2026-01-10 04:59:13,061 | INFO     | pilot state: finished 
[2026-01-09 23:59:57] 2026-01-10 04:59:13,061 | INFO     | transexitcode: 0
[2026-01-09 23:59:57] 2026-01-10 04:59:13,061 | INFO     | exeerrorcode: 0
[2026-01-09 23:59:57] 2026-01-10 04:59:13,062 | INFO     | exeerrordiag: 
[2026-01-09 23:59:57] 2026-01-10 04:59:13,062 | INFO     | exitcode: 0
[2026-01-09 23:59:57] 2026-01-10 04:59:13,062 | INFO     | exitmsg: OK
[2026-01-09 23:59:57] 2026-01-10 04:59:13,062 | INFO     | cpuconsumptiontime: 71072 s
[2026-01-09 23:59:57] 2026-01-10 04:59:13,062 | INFO     | nevents: 400
[2026-01-09 23:59:57] 2026-01-10 04:59:13,062 | INFO     | neventsw: 0
[2026-01-09 23:59:57] 2026-01-10 04:59:13,062 | INFO     | pid: 3898436
[2026-01-09 23:59:57] 2026-01-10 04:59:13,062 | INFO     | pgrp: 3898436
[2026-01-09 23:59:57] 2026-01-10 04:59:13,062 | INFO     | corecount: 12
[2026-01-09 23:59:57] 2026-01-10 04:59:13,062 | INFO     | event service: False
[2026-01-09 23:59:57] 2026-01-10 04:59:13,062 | INFO     | sizes: {0: 2283796, 1: 2283995, 2: 2283995, 13: 2284023, 15: 2284341, 23: 2284369, 29829: 2322205, 29833: 2331203, 29837: 2331259, 29860: 2331453}
[2026-01-09 23:59:57] 2026-01-10 04:59:13,062 | INFO     | --------------------------------------------------
[2026-01-09 23:59:57] 2026-01-10 04:59:13,063 | INFO     | 
[2026-01-09 23:59:57] 2026-01-10 04:59:13,063 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 23:59:57] 2026-01-10 04:59:13,122 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,122 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,122 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,123 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,123 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,123 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,123 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,123 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,123 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,123 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,123 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,124 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,124 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,124 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,124 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,124 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,124 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,124 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 23:59:57] 2026-01-10 04:59:13,124 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,124 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 23:59:57] 2026-01-10 04:59:13,125 | INFO     | job 6962919818 has completed (purged errors)
[2026-01-09 23:59:57] 2026-01-10 04:59:13,125 | INFO     | overall cleanup function is called
[2026-01-09 23:59:57] 2026-01-10 04:59:14,140 | INFO     | --- collectZombieJob: --- 10, [3898436]
[2026-01-09 23:59:57] 2026-01-10 04:59:14,140 | INFO     | zombie collector waiting for pid 3898436
[2026-01-09 23:59:57] 2026-01-10 04:59:14,140 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 23:59:57] 2026-01-10 04:59:14,140 | INFO     | collected zombie processes
[2026-01-09 23:59:57] 2026-01-10 04:59:14,140 | INFO     | will attempt to kill all subprocesses of pid=3898436
[2026-01-09 23:59:57] 2026-01-10 04:59:14,957 | INFO     | process IDs to be killed: [3898436] (in reverse order)
[2026-01-09 23:59:57] 2026-01-10 04:59:15,174 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:59:57] 2026-01-10 04:59:15,175 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:59:57] 2026-01-10 04:59:15,214 | INFO     | did not find any defunct processes belonging to 3898436
[2026-01-09 23:59:57] 2026-01-10 04:59:15,262 | INFO     | did not find any defunct processes belonging to 3898436
[2026-01-09 23:59:57] 2026-01-10 04:59:15,262 | INFO     | ready for new job
[2026-01-09 23:59:57] 2026-01-10 04:59:15,263 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:59:57] 2026-01-10 04:59:15,279 | INFO     | ***************************************
[2026-01-09 23:59:57] 2026-01-10 04:59:15,279 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:59:57] 2026-01-10 04:59:15,279 | INFO     | ***************************************
[2026-01-09 23:59:57] 2026-01-10 04:59:15,279 | INFO     | 
[2026-01-09 23:59:57] 2026-01-10 04:59:15,285 | INFO     | architecture information:
[2026-01-09 23:59:57] 2026-01-10 04:59:15,290 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:59:57] 2026-01-10 04:59:15,352 | INFO     | cat /etc/os-release:
[2026-01-09 23:59:57] NAME="CentOS Linux"
[2026-01-09 23:59:57] VERSION="7 (Core)"
[2026-01-09 23:59:57] ID="centos"
[2026-01-09 23:59:57] ID_LIKE="rhel fedora"
[2026-01-09 23:59:57] VERSION_ID="7"
[2026-01-09 23:59:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:59:57] ANSI_COLOR="0;31"
[2026-01-09 23:59:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:59:57] HOME_URL="https://www.centos.org/"
[2026-01-09 23:59:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:59:57] 
[2026-01-09 23:59:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:59:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:59:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:59:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:59:57] 
[2026-01-09 23:59:57] 2026-01-10 04:59:15,352 | INFO     | ***************************************
[2026-01-09 23:59:57] 2026-01-10 04:59:15,869 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 23:59:57] 2026-01-10 04:59:15,919 | INFO     | sufficient remaining disk space (75373740032 B)
[2026-01-09 23:59:57] 2026-01-10 04:59:15,920 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:59:57] 2026-01-10 04:59:15,920 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:59:57] 2026-01-10 04:59:15,920 | INFO     | update_server=False
[2026-01-09 23:59:57] 2026-01-10 04:59:15,920 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:59:57] 2026-01-10 04:59:16,416 | INFO     | all data control threads have been joined
[2026-01-09 23:59:57] 2026-01-10 04:59:16,586 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:59:57] 2026-01-10 04:59:16,586 | INFO     | aborting loop
[2026-01-09 23:59:57] 2026-01-10 04:59:16,927 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:59:57] 2026-01-10 04:59:16,932 | INFO     | all payload control threads have been joined
[2026-01-09 23:59:57] 2026-01-10 04:59:17,058 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:59:57] 2026-01-10 04:59:17,177 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:59:57] 2026-01-10 04:59:17,209 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:59:57] 2026-01-10 04:59:17,422 | INFO     | [data] control thread has finished
[2026-01-09 23:59:57] 2026-01-10 04:59:17,548 | INFO     | all job control threads have been joined
[2026-01-09 23:59:57] 2026-01-10 04:59:17,592 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:59:57] 2026-01-10 04:59:17,627 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:59:57] 2026-01-10 04:59:17,677 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:59:57] 2026-01-10 04:59:17,938 | INFO     | [payload] control thread has finished
[2026-01-09 23:59:57] 2026-01-10 04:59:18,075 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:59:57] 2026-01-10 04:59:18,082 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:59:57] 2026-01-10 04:59:18,221 | INFO     | [job] validate thread has finished
[2026-01-09 23:59:57] 2026-01-10 04:59:18,278 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:59:57] 2026-01-10 04:59:18,554 | INFO     | [job] control thread has finished
[2026-01-09 23:59:57] 2026-01-10 04:59:18,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:59:57] 2026-01-10 04:59:19,082 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:59:57] 2026-01-10 04:59:19,184 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:59:57] 2026-01-10 04:59:22,740 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:59:57] 2026-01-10 04:59:26,154 | INFO     | job.realtimelogging is not enabled
[2026-01-09 23:59:57] 2026-01-10 04:59:27,160 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:59:57] 2026-01-10 04:59:45,534 | INFO     | PID=3880402 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 23:59:57] 2026-01-10 04:59:45,534 | INFO     | .. there are 40 such processes running
[2026-01-09 23:59:57] 2026-01-10 04:59:45,534 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:59:57] 2026-01-10 04:59:45,535 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:59:57] 2026-01-10 04:59:45,535 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:59:57] 2026-01-10 04:59:50,650 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:59:57] 2026-01-10 04:59:51,657 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140698526062400)>', '<ExcThread(monitor, started 140697860552448)>']
[2026-01-09 23:59:57] 2026-01-10 04:59:52,577 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:59:57] 2026-01-10 04:59:52,577 | INFO     | [monitor] control thread has ended
[2026-01-09 23:59:57] 2026-01-10 04:59:56,683 | INFO     | all workflow threads have been joined
[2026-01-09 23:59:57] 2026-01-10 04:59:56,683 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:59:57] 2026-01-10 04:59:56,683 | INFO     | traces error code: 0
[2026-01-09 23:59:57] 2026-01-10 04:59:56,683 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:59:57] 2026-01-10 04:59:56,903 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:59:57] 2026-01-10 04:59:56,934 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:59:57] 2026-01-10 04:59:56,962 [wrapper] pilotpid: 3880402
[2026-01-09 23:59:57] 2026-01-10 04:59:57,009 [wrapper] Pilot exit status: 0
[2026-01-09 23:59:57] 2026-01-10 04:59:57,181 [wrapper] pandaids: 6962919818 6962919818
[2026-01-09 23:59:57] 2026-01-10 04:59:57,338 [wrapper] cleanup supervisor_pilot 1593329 3880403
[2026-01-09 23:59:57] 2026-01-10 04:59:57,341 [wrapper] Test setup, not cleaning
[2026-01-09 23:59:57] 2026-01-10 04:59:57,348 [wrapper] apfmon messages muted
[2026-01-09 23:59:57] 2026-01-10 04:59:57,355 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:59:57] 2026-01-10 04:59:57,400 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:59:57]  *** Error codes and diagnostics ***
[2026-01-09 23:59:57]     "exeErrorCode": 0,
[2026-01-09 23:59:57]     "exeErrorDiag": "",
[2026-01-09 23:59:57]     "pilotErrorCode": 0,
[2026-01-09 23:59:57]     "pilotErrorDiag": "",
[2026-01-09 23:59:57]  *** Listing of results directory ***
[2026-01-09 23:59:57] total 658020
[2026-01-09 23:59:57] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 23:59:57] -rwx------. 1 boincer umatlas     36322 Jan  8 03:07 runpilot2-wrapper.sh
[2026-01-09 23:59:57] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:11 queuedata.json
[2026-01-09 23:59:57] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 03:11 pilot3.tar.gz
[2026-01-09 23:59:57] -rw-r--r--. 1 boincer umatlas       100 Jan  8 17:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:59:57] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 17:11 run_atlas
[2026-01-09 23:59:57] -rw-r--r--. 1 boincer umatlas       105 Jan  8 17:11 job.xml
[2026-01-09 23:59:57] -rw-r--r--. 3 boincer umatlas 224269366 Jan  8 17:11 EVNT.47898824._000809.pool.root.1
[2026-01-09 23:59:57] -rw-r--r--. 3 boincer umatlas 224269366 Jan  8 17:11 ATLAS.root_0
[2026-01-09 23:59:57] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 17:11 shared
[2026-01-09 23:59:57] -rw-r--r--. 2 boincer umatlas    592404 Jan  8 17:11 input.tar.gz
[2026-01-09 23:59:57] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 17:11 start_atlas.sh
[2026-01-09 23:59:57] -rw-r--r--. 1 boincer umatlas         0 Jan  8 17:11 boinc_lockfile
[2026-01-09 23:59:57] -rw-r--r--. 1 boincer umatlas      2518 Jan  9 15:40 pandaJob.out
[2026-01-09 23:59:57] -rw-------. 1 boincer umatlas        57 Jan  9 15:40 setup.sh.local
[2026-01-09 23:59:57] -rw-------. 1 boincer umatlas    989381 Jan  9 15:40 agis_schedconf.cvmfs.json
[2026-01-09 23:59:57] -rw-r--r--. 1 boincer umatlas      6661 Jan  9 23:57 init_data.xml
[2026-01-09 23:59:57] -rw-------. 1 boincer umatlas 213344520 Jan  9 23:57 HITS.47898826._021552.pool.root.1
[2026-01-09 23:59:57] -rw-r--r--. 1 boincer umatlas       533 Jan  9 23:57 boinc_task_state.xml
[2026-01-09 23:59:57] -rw-------. 1 boincer umatlas      1056 Jan  9 23:58 memory_monitor_summary.json
[2026-01-09 23:59:57] -rw-------. 1 boincer umatlas   1516240 Jan  9 23:58 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:59:57] -rw-------. 1 boincer umatlas    671070 Jan  9 23:58 log.47898826._021552.job.log.tgz.1
[2026-01-09 23:59:57] -rw-------. 1 boincer umatlas        97 Jan  9 23:58 pilot_heartbeat.json
[2026-01-09 23:59:57] -rw-------. 1 boincer umatlas      7859 Jan  9 23:59 heartbeat.json
[2026-01-09 23:59:57] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 23:59 boinc_mmap_file
[2026-01-09 23:59:57] -rw-r--r--. 1 boincer umatlas        29 Jan  9 23:59 wrapper_checkpoint.txt
[2026-01-09 23:59:57] -rw-------. 1 boincer umatlas      4896 Jan  9 23:59 pilotlog.txt
[2026-01-09 23:59:57] -rw-------. 1 boincer umatlas   3331613 Jan  9 23:59 log.47898826._021552.job.log.1
[2026-01-09 23:59:57] -rw-------. 1 boincer umatlas       357 Jan  9 23:59 output.list
[2026-01-09 23:59:57] -rw-r--r--. 1 boincer umatlas       620 Jan  9 23:59 runtime_log
[2026-01-09 23:59:57] -rw-------. 1 boincer umatlas   4024320 Jan  9 23:59 result.tar.gz
[2026-01-09 23:59:57] -rw-------. 1 boincer umatlas       785 Jan  9 23:59 Y6uNDmWE0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmaleKDmvSxKcn.diag
[2026-01-09 23:59:57] -rw-r--r--. 1 boincer umatlas      9415 Jan  9 23:59 runtime_log.err
[2026-01-09 23:59:57] -rw-r--r--. 1 boincer umatlas     23636 Jan  9 23:59 stderr.txt
[2026-01-09 23:59:57] HITS file was successfully produced:
[2026-01-09 23:59:57] -rw-------. 1 boincer umatlas 213344520 Jan  9 23:57 shared/HITS.pool.root.1
[2026-01-09 23:59:57]  *** Contents of shared directory: ***
[2026-01-09 23:59:57] total 431896
[2026-01-09 23:59:57] -rw-r--r--. 3 boincer umatlas 224269366 Jan  8 17:11 ATLAS.root_0
[2026-01-09 23:59:57] -rw-r--r--. 2 boincer umatlas    592404 Jan  8 17:11 input.tar.gz
[2026-01-09 23:59:57] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 17:11 start_atlas.sh
[2026-01-09 23:59:57] -rw-------. 1 boincer umatlas 213344520 Jan  9 23:57 HITS.pool.root.1
[2026-01-09 23:59:57] -rw-------. 1 boincer umatlas   4024320 Jan  9 23:59 result.tar.gz
23:59:59 (3867902): run_atlas exited; CPU time 72252.076893
23:59:59 (3867902): called boinc_finish(0)

</stderr_txt>
]]>

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