Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:02:34 (1856317): wrapper (7.7.26015): starting
00:02:34 (1856317): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 00:02:34] Arguments: --nthreads 4
[2026-01-09 00:02:34] Threads: 4
[2026-01-09 00:02:34] Checking for CVMFS
[2026-01-09 00:02:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:02:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:02:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:02:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:02:34] 2.9.2.0 1472446 1368 83008 154922 2 57 20961151 36864001 0 130560 0 998600 99.989 52396 14859 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 00:02:34] CVMFS is ok
[2026-01-09 00:02:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:02:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:02:34] Further information can be found at the LHC@home message board.
[2026-01-09 00:02:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:02:34] Checking for apptainer binary...
[2026-01-09 00:02:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:02:34] Running /usr/bin/apptainer --version
[2026-01-09 00:02:34] apptainer version 1.4.1-1.1
[2026-01-09 00:02:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:02:34] thA334
[2026-01-09 00:02:34] apptainer works
[2026-01-09 00:02:34] Set ATHENA_PROC_NUMBER=4
[2026-01-09 00:02:34] Set ATHENA_CORE_NUMBER=4
[2026-01-09 00:02:34] Starting ATLAS job with PandaID=6962918014
[2026-01-09 00:02:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 01:39:00]  *** The last 200 lines of the pilot log: ***
[2026-01-09 01:39:00] 2026-01-09 00:38:28,155 | INFO     | collected zombie processes
[2026-01-09 01:39:00] 2026-01-09 00:38:28,155 | INFO     | will attempt to kill all subprocesses of pid=1866691
[2026-01-09 01:39:00] 2026-01-09 00:38:28,199 | INFO     | process IDs to be killed: [1866691] (in reverse order)
[2026-01-09 01:39:00] 2026-01-09 00:38:28,229 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 01:39:00] 2026-01-09 00:38:28,229 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 01:39:00] 2026-01-09 00:38:28,231 | INFO     | did not find any defunct processes belonging to 1866691
[2026-01-09 01:39:00] 2026-01-09 00:38:28,232 | INFO     | did not find any defunct processes belonging to 1866691
[2026-01-09 01:39:00] 2026-01-09 00:38:28,232 | INFO     | ready for new job
[2026-01-09 01:39:00] 2026-01-09 00:38:28,232 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 01:39:00] 2026-01-09 00:38:28,233 | INFO     | ***************************************
[2026-01-09 01:39:00] 2026-01-09 00:38:28,233 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 01:39:00] 2026-01-09 00:38:28,233 | INFO     | ***************************************
[2026-01-09 01:39:00] 2026-01-09 00:38:28,233 | INFO     | 
[2026-01-09 01:39:00] 2026-01-09 00:38:28,234 | INFO     | architecture information:
[2026-01-09 01:39:00] 2026-01-09 00:38:28,234 | INFO     | executing command: cat /etc/os-release
[2026-01-09 01:39:00] 2026-01-09 00:38:28,246 | INFO     | cat /etc/os-release:
[2026-01-09 01:39:00] NAME="CentOS Linux"
[2026-01-09 01:39:00] VERSION="7 (Core)"
[2026-01-09 01:39:00] ID="centos"
[2026-01-09 01:39:00] ID_LIKE="rhel fedora"
[2026-01-09 01:39:00] VERSION_ID="7"
[2026-01-09 01:39:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 01:39:00] ANSI_COLOR="0;31"
[2026-01-09 01:39:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 01:39:00] HOME_URL="https://www.centos.org/"
[2026-01-09 01:39:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 01:39:00] 
[2026-01-09 01:39:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 01:39:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 01:39:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 01:39:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 01:39:00] 
[2026-01-09 01:39:00] 2026-01-09 00:38:28,247 | INFO     | ***************************************
[2026-01-09 01:39:00] 2026-01-09 00:38:28,750 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 01:39:00] 2026-01-09 00:38:28,768 | INFO     | sufficient remaining disk space (238568865792 B)
[2026-01-09 01:39:00] 2026-01-09 00:38:28,768 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 01:39:00] 2026-01-09 00:38:28,768 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 01:39:00] 2026-01-09 00:38:28,768 | INFO     | update_server=False
[2026-01-09 01:39:00] 2026-01-09 00:38:28,768 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 01:39:00] 2026-01-09 00:38:28,768 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 01:39:00] 2026-01-09 00:38:28,768 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 01:39:00] 2026-01-09 00:38:28,993 | INFO     | all payload control threads have been joined
[2026-01-09 01:39:00] 2026-01-09 00:38:29,005 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 01:39:00] 2026-01-09 00:38:29,005 | INFO     | aborting loop
[2026-01-09 01:39:00] 2026-01-09 00:38:29,222 | INFO     | all data control threads have been joined
[2026-01-09 01:39:00] 2026-01-09 00:38:29,774 | INFO     | [job] queue monitor thread has finished
[2026-01-09 01:39:00] 2026-01-09 00:38:29,774 | INFO     | [job] retrieve thread has finished
[2026-01-09 01:39:00] 2026-01-09 00:38:29,889 | INFO     | [data] copytool_in thread has finished
[2026-01-09 01:39:00] 2026-01-09 00:38:29,999 | INFO     | [payload] control thread has finished
[2026-01-09 01:39:00] 2026-01-09 00:38:30,010 | INFO     | [job] job monitor thread has finished
[2026-01-09 01:39:00] 2026-01-09 00:38:30,104 | INFO     | all job control threads have been joined
[2026-01-09 01:39:00] 2026-01-09 00:38:30,143 | INFO     | [payload] failed_post thread has finished
[2026-01-09 01:39:00] 2026-01-09 00:38:30,228 | INFO     | [data] control thread has finished
[2026-01-09 01:39:00] 2026-01-09 00:38:30,675 | INFO     | [payload] validate_post thread has finished
[2026-01-09 01:39:00] 2026-01-09 00:38:30,774 | INFO     | [data] copytool_out thread has finished
[2026-01-09 01:39:00] 2026-01-09 00:38:30,944 | INFO     | [job] validate thread has finished
[2026-01-09 01:39:00] 2026-01-09 00:38:31,083 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 01:39:00] 2026-01-09 00:38:31,104 | INFO     | [job] control thread has finished
[2026-01-09 01:39:00] 2026-01-09 00:38:31,121 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 01:39:00] 2026-01-09 00:38:31,228 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 01:39:00] 2026-01-09 00:38:31,537 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 01:39:00] 2026-01-09 00:38:35,544 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 01:39:00] 2026-01-09 00:38:39,281 | INFO     | job.realtimelogging is not enabled
[2026-01-09 01:39:00] 2026-01-09 00:38:40,287 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 01:39:00] 2026-01-09 00:38:48,812 | INFO     | [monitor] cgroup control has ended
[2026-01-09 01:39:00] 2026-01-09 00:38:50,233 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140219763894080)>', '<ExcThread(monitor, started 140218535507712)>']
[2026-01-09 01:39:00] 2026-01-09 00:38:55,242 | INFO     | all workflow threads have been joined
[2026-01-09 01:39:00] 2026-01-09 00:38:55,242 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 01:39:00] 2026-01-09 00:38:55,243 | INFO     | traces error code: 0
[2026-01-09 01:39:00] 2026-01-09 00:38:55,243 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 01:39:00] 2026-01-09 00:38:59,860 | INFO     | PID=1860108 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 01:39:00] 2026-01-09 00:38:59,860 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 01:39:00] 2026-01-09 00:38:59,860 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 01:39:00] 2026-01-09 00:38:59,860 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 01:39:00] 2026-01-09 00:38:59,860 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 01:39:00] 2026-01-09 00:38:59,860 | INFO     | [monitor] control thread has ended
[2026-01-09 01:39:00] 2026-01-09 00:38:59,925 [wrapper] ==== pilot stdout END ====
[2026-01-09 01:39:00] 2026-01-09 00:38:59,929 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 01:39:00] 2026-01-09 00:38:59,933 [wrapper] pilotpid: 1860108
[2026-01-09 01:39:00] 2026-01-09 00:38:59,937 [wrapper] Pilot exit status: 0
[2026-01-09 01:39:00] 2026-01-09 00:38:59,947 [wrapper] pandaids: 6962918014
[2026-01-09 01:39:00] 2026-01-09 00:38:59,968 [wrapper] cleanup supervisor_pilot 1879047 1860109
[2026-01-09 01:39:00] 2026-01-09 00:38:59,971 [wrapper] Test setup, not cleaning
[2026-01-09 01:39:00] 2026-01-09 00:38:59,975 [wrapper] apfmon messages muted
[2026-01-09 01:39:00] 2026-01-09 00:38:59,978 [wrapper] ==== wrapper stdout END ====
[2026-01-09 01:39:00] 2026-01-09 00:38:59,981 [wrapper] ==== wrapper stderr END ====
[2026-01-09 01:39:00]  *** Error codes and diagnostics ***
[2026-01-09 01:39:00]     "exeErrorCode": 0,
[2026-01-09 01:39:00]     "exeErrorDiag": "",
[2026-01-09 01:39:00]     "pilotErrorCode": 0,
[2026-01-09 01:39:00]     "pilotErrorDiag": "",
[2026-01-09 01:39:00]  *** Listing of results directory ***
[2026-01-09 01:39:00] total 428920
[2026-01-09 01:39:00] -rwx------ 1 boinc boinc     36322 Jan  8 09:06 runpilot2-wrapper.sh
[2026-01-09 01:39:00] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:11 queuedata.json
[2026-01-09 01:39:00] -rw-r--r-- 1 boinc boinc    579449 Jan  8 09:11 pilot3.tar.gz
[2026-01-09 01:39:00] -rw-r--r-- 1 boinc boinc       100 Jan  9 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 01:39:00] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 00:02 run_atlas
[2026-01-09 01:39:00] -rw-r--r-- 1 boinc boinc       105 Jan  9 00:02 job.xml
[2026-01-09 01:39:00] -rw-r--r-- 2 boinc boinc 222043954 Jan  9 00:02 EVNT.47898824._000666.pool.root.1
[2026-01-09 01:39:00] -rw-r--r-- 2 boinc boinc    592396 Jan  9 00:02 input.tar.gz
[2026-01-09 01:39:00] -rw-r--r-- 2 boinc boinc     15847 Jan  9 00:02 start_atlas.sh
[2026-01-09 01:39:00] drwxrwx--x 2 boinc boinc      4096 Jan  9 00:02 shared
[2026-01-09 01:39:00] -rw-r--r-- 1 boinc boinc         0 Jan  9 00:02 boinc_setup_complete
[2026-01-09 01:39:00] -rw-r--r-- 1 boinc boinc      6369 Jan  9 00:02 init_data.xml
[2026-01-09 01:39:00] -rw-r--r-- 1 boinc boinc         0 Jan  9 00:02 boinc_lockfile
[2026-01-09 01:39:00] -rw-r--r-- 1 boinc boinc      2519 Jan  9 00:02 pandaJob.out
[2026-01-09 01:39:00] -rw------- 1 boinc boinc    989837 Jan  9 00:02 agis_schedconf.cvmfs.json
[2026-01-09 01:39:00] -rw------- 1 boinc boinc   1516240 Jan  9 00:02 agis_ddmendpoints.agis.ALL.json
[2026-01-09 01:39:00] drwx------ 5 boinc boinc      4096 Jan  9 00:02 pilot3
[2026-01-09 01:39:00] -rw------- 1 boinc boinc 211020302 Jan  9 01:37 HITS.47898826._020094.pool.root.1
[2026-01-09 01:39:00] -rw-r--r-- 1 boinc boinc       529 Jan  9 01:38 boinc_task_state.xml
[2026-01-09 01:39:00] -rw------- 1 boinc boinc        95 Jan  9 01:38 pilot_heartbeat.json
[2026-01-09 01:39:00] -rw------- 1 boinc boinc      1016 Jan  9 01:38 memory_monitor_summary.json
[2026-01-09 01:39:00] -rw------- 1 boinc boinc    289277 Jan  9 01:38 log.47898826._020094.job.log.tgz.1
[2026-01-09 01:39:00] -rw------- 1 boinc boinc      7763 Jan  9 01:38 heartbeat.json
[2026-01-09 01:39:00] -rw-r--r-- 1 boinc boinc      8192 Jan  9 01:38 boinc_mmap_file
[2026-01-09 01:39:00] -rw-r--r-- 1 boinc boinc        27 Jan  9 01:38 wrapper_checkpoint.txt
[2026-01-09 01:39:00] -rw------- 1 boinc boinc       747 Jan  9 01:38 pilotlog.txt
[2026-01-09 01:39:00] -rw------- 1 boinc boinc    835669 Jan  9 01:38 log.47898826._020094.job.log.1
[2026-01-09 01:39:00] -rw------- 1 boinc boinc       357 Jan  9 01:39 output.list
[2026-01-09 01:39:00] -rw-r--r-- 1 boinc boinc       620 Jan  9 01:39 runtime_log
[2026-01-09 01:39:00] -rw------- 1 boinc boinc   1146880 Jan  9 01:39 result.tar.gz
[2026-01-09 01:39:00] -rw-r--r-- 1 boinc boinc      8897 Jan  9 01:39 runtime_log.err
[2026-01-09 01:39:00] -rw------- 1 boinc boinc       659 Jan  9 01:39 A5MMDmYD0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrnjKDmg5V2en.diag
[2026-01-09 01:39:00] -rw-r--r-- 1 boinc boinc     10375 Jan  9 01:39 stderr.txt
[2026-01-09 01:39:00] HITS file was successfully produced:
[2026-01-09 01:39:00] -rw------- 1 boinc boinc 211020302 Jan  9 01:37 shared/HITS.pool.root.1
[2026-01-09 01:39:00]  *** Contents of shared directory: ***
[2026-01-09 01:39:00] total 424640
[2026-01-09 01:39:00] -rw-r--r-- 2 boinc boinc 222043954 Jan  9 00:02 ATLAS.root_0
[2026-01-09 01:39:00] -rw-r--r-- 2 boinc boinc    592396 Jan  9 00:02 input.tar.gz
[2026-01-09 01:39:00] -rw-r--r-- 2 boinc boinc     15847 Jan  9 00:02 start_atlas.sh
[2026-01-09 01:39:00] -rw------- 1 boinc boinc 211020302 Jan  9 01:37 HITS.pool.root.1
[2026-01-09 01:39:00] -rw------- 1 boinc boinc   1146880 Jan  9 01:39 result.tar.gz
01:39:01 (1856317): run_atlas exited; CPU time 21780.727160
01:39:01 (1856317): called boinc_finish(0)

</stderr_txt>
]]>

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