Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:19:59 (3439807): wrapper (7.7.26015): starting
01:19:59 (3439807): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 01:19:59] Arguments: --nthreads 3
[2026-01-09 01:19:59] Threads: 3
[2026-01-09 01:19:59] Checking for CVMFS
[2026-01-09 01:20:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 01:20:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 01:20:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 01:20:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 01:20:00] 2.9.2.0 3098039 1431 73304 154925 2 56 20101132 36864000 0 130560 0 870346 99.986 56427 18647 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 01:20:00] CVMFS is ok
[2026-01-09 01:20:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 01:20:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 01:20:00] Further information can be found at the LHC@home message board.
[2026-01-09 01:20:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 01:20:00] Checking for apptainer binary...
[2026-01-09 01:20:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 01:20:00] Running /usr/bin/apptainer --version
[2026-01-09 01:20:00] apptainer version 1.4.1-1.1
[2026-01-09 01:20:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 01:20:00] atlasA223b
[2026-01-09 01:20:00] apptainer works
[2026-01-09 01:20:00] Set ATHENA_PROC_NUMBER=3
[2026-01-09 01:20:00] Set ATHENA_CORE_NUMBER=3
[2026-01-09 01:20:00] Starting ATLAS job with PandaID=6963078612
[2026-01-09 01:20:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 03:12:24]  *** The last 200 lines of the pilot log: ***
[2026-01-09 03:12:24] 2026-01-09 02:11:52,398 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 03:12:24] 2026-01-09 02:11:52,398 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 03:12:24] 2026-01-09 02:11:52,398 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 03:12:24] 2026-01-09 02:11:52,398 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 03:12:24] 2026-01-09 02:11:52,398 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 03:12:24] 2026-01-09 02:11:52,398 | INFO     | job 6963078612 has completed (purged errors)
[2026-01-09 03:12:24] 2026-01-09 02:11:52,398 | INFO     | overall cleanup function is called
[2026-01-09 03:12:24] 2026-01-09 02:11:53,405 | INFO     | --- collectZombieJob: --- 10, [3449973]
[2026-01-09 03:12:24] 2026-01-09 02:11:53,405 | INFO     | zombie collector waiting for pid 3449973
[2026-01-09 03:12:24] 2026-01-09 02:11:53,405 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 03:12:24] 2026-01-09 02:11:53,405 | INFO     | collected zombie processes
[2026-01-09 03:12:24] 2026-01-09 02:11:53,405 | INFO     | will attempt to kill all subprocesses of pid=3449973
[2026-01-09 03:12:24] 2026-01-09 02:11:53,458 | INFO     | process IDs to be killed: [3449973] (in reverse order)
[2026-01-09 03:12:24] 2026-01-09 02:11:53,488 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 03:12:24] 2026-01-09 02:11:53,488 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 03:12:24] 2026-01-09 02:11:53,490 | INFO     | did not find any defunct processes belonging to 3449973
[2026-01-09 03:12:24] 2026-01-09 02:11:53,492 | INFO     | did not find any defunct processes belonging to 3449973
[2026-01-09 03:12:24] 2026-01-09 02:11:53,492 | INFO     | ready for new job
[2026-01-09 03:12:24] 2026-01-09 02:11:53,492 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 03:12:24] 2026-01-09 02:11:53,492 | INFO     | ***************************************
[2026-01-09 03:12:24] 2026-01-09 02:11:53,492 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 03:12:24] 2026-01-09 02:11:53,492 | INFO     | ***************************************
[2026-01-09 03:12:24] 2026-01-09 02:11:53,493 | INFO     | 
[2026-01-09 03:12:24] 2026-01-09 02:11:53,493 | INFO     | architecture information:
[2026-01-09 03:12:24] 2026-01-09 02:11:53,493 | INFO     | executing command: cat /etc/os-release
[2026-01-09 03:12:24] 2026-01-09 02:11:53,503 | INFO     | cat /etc/os-release:
[2026-01-09 03:12:24] NAME="CentOS Linux"
[2026-01-09 03:12:24] VERSION="7 (Core)"
[2026-01-09 03:12:24] ID="centos"
[2026-01-09 03:12:24] ID_LIKE="rhel fedora"
[2026-01-09 03:12:24] VERSION_ID="7"
[2026-01-09 03:12:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 03:12:24] ANSI_COLOR="0;31"
[2026-01-09 03:12:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 03:12:24] HOME_URL="https://www.centos.org/"
[2026-01-09 03:12:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 03:12:24] 
[2026-01-09 03:12:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 03:12:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 03:12:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 03:12:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 03:12:24] 
[2026-01-09 03:12:24] 2026-01-09 02:11:53,503 | INFO     | ***************************************
[2026-01-09 03:12:24] 2026-01-09 02:11:54,006 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 03:12:24] 2026-01-09 02:11:54,016 | INFO     | sufficient remaining disk space (384533790720 B)
[2026-01-09 03:12:24] 2026-01-09 02:11:54,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 03:12:24] 2026-01-09 02:11:54,016 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 03:12:24] 2026-01-09 02:11:54,017 | INFO     | update_server=False
[2026-01-09 03:12:24] 2026-01-09 02:11:54,017 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 03:12:24] 2026-01-09 02:11:54,017 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 03:12:24] 2026-01-09 02:11:54,017 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 03:12:24] 2026-01-09 02:11:54,017 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 03:12:24] 2026-01-09 02:11:54,387 | INFO     | all data control threads have been joined
[2026-01-09 03:12:24] 2026-01-09 02:11:54,487 | INFO     | all job control threads have been joined
[2026-01-09 03:12:24] 2026-01-09 02:11:54,886 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 03:12:24] 2026-01-09 02:11:54,886 | INFO     | aborting loop
[2026-01-09 03:12:24] 2026-01-09 02:11:55,022 | INFO     | [job] retrieve thread has finished
[2026-01-09 03:12:24] 2026-01-09 02:11:55,022 | INFO     | [job] queue monitor thread has finished
[2026-01-09 03:12:24] 2026-01-09 02:11:55,040 | INFO     | all payload control threads have been joined
[2026-01-09 03:12:24] 2026-01-09 02:11:55,047 | INFO     | [payload] validate_post thread has finished
[2026-01-09 03:12:24] 2026-01-09 02:11:55,347 | INFO     | [payload] failed_post thread has finished
[2026-01-09 03:12:24] 2026-01-09 02:11:55,393 | INFO     | [data] control thread has finished
[2026-01-09 03:12:24] 2026-01-09 02:11:55,492 | INFO     | [job] control thread has finished
[2026-01-09 03:12:24] 2026-01-09 02:11:55,891 | INFO     | [job] job monitor thread has finished
[2026-01-09 03:12:24] 2026-01-09 02:11:55,996 | INFO     | [data] copytool_in thread has finished
[2026-01-09 03:12:24] 2026-01-09 02:11:56,020 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 03:12:24] 2026-01-09 02:11:56,022 | INFO     | [data] copytool_out thread has finished
[2026-01-09 03:12:24] 2026-01-09 02:11:56,046 | INFO     | [payload] control thread has finished
[2026-01-09 03:12:24] 2026-01-09 02:11:56,188 | INFO     | [job] validate thread has finished
[2026-01-09 03:12:24] 2026-01-09 02:11:56,276 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 03:12:24] 2026-01-09 02:11:56,320 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 03:12:24] 2026-01-09 02:11:58,022 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 03:12:24] 2026-01-09 02:12:04,341 | INFO     | job.realtimelogging is not enabled
[2026-01-09 03:12:24] 2026-01-09 02:12:05,346 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 03:12:24] 2026-01-09 02:12:17,513 | INFO     | [monitor] cgroup control has ended
[2026-01-09 03:12:24] 2026-01-09 02:12:19,049 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140589982562112)>', '<ExcThread(monitor, started 140589471344384)>']
[2026-01-09 03:12:24] 2026-01-09 02:12:24,074 | INFO     | all workflow threads have been joined
[2026-01-09 03:12:24] 2026-01-09 02:12:24,075 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 03:12:24] 2026-01-09 02:12:24,075 | INFO     | traces error code: 0
[2026-01-09 03:12:24] 2026-01-09 02:12:24,075 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 03:12:24] 2026-01-09 02:12:24,078 | INFO     | PID=3443526 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 03:12:24] 2026-01-09 02:12:24,078 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 03:12:24] 2026-01-09 02:12:24,078 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 03:12:24] 2026-01-09 02:12:24,078 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 03:12:24] 2026-01-09 02:12:24,078 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 03:12:24] 2026-01-09 02:12:24,078 | INFO     | [monitor] control thread has ended
[2026-01-09 03:12:24] 2026-01-09 02:12:24,127 [wrapper] ==== pilot stdout END ====
[2026-01-09 03:12:24] 2026-01-09 02:12:24,130 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 03:12:24] 2026-01-09 02:12:24,132 [wrapper] pilotpid: 3443526
[2026-01-09 03:12:24] 2026-01-09 02:12:24,135 [wrapper] Pilot exit status: 0
[2026-01-09 03:12:24] 2026-01-09 02:12:24,143 [wrapper] pandaids: 6963078612
[2026-01-09 03:12:24] 2026-01-09 02:12:24,162 [wrapper] cleanup supervisor_pilot 3465034 3443527
[2026-01-09 03:12:24] 2026-01-09 02:12:24,165 [wrapper] Test setup, not cleaning
[2026-01-09 03:12:24] 2026-01-09 02:12:24,168 [wrapper] apfmon messages muted
[2026-01-09 03:12:24] 2026-01-09 02:12:24,170 [wrapper] ==== wrapper stdout END ====
[2026-01-09 03:12:24] 2026-01-09 02:12:24,173 [wrapper] ==== wrapper stderr END ====
[2026-01-09 03:12:24]  *** Error codes and diagnostics ***
[2026-01-09 03:12:24]     "exeErrorCode": 0,
[2026-01-09 03:12:24]     "exeErrorDiag": "",
[2026-01-09 03:12:24]     "pilotErrorCode": 0,
[2026-01-09 03:12:24]     "pilotErrorDiag": "",
[2026-01-09 03:12:24]  *** Listing of results directory ***
[2026-01-09 03:12:24] total 438508
[2026-01-09 03:12:24] -rw-r--r-- 1 boinc boinc    579449 Jan  8 12:09 pilot3.tar.gz
[2026-01-09 03:12:24] -rwx------ 1 boinc boinc     36322 Jan  8 12:10 runpilot2-wrapper.sh
[2026-01-09 03:12:24] -rw-r--r-- 1 boinc boinc      5112 Jan  8 12:14 queuedata.json
[2026-01-09 03:12:24] -rw-r--r-- 1 boinc boinc       100 Jan  9 01:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 03:12:24] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 01:19 run_atlas
[2026-01-09 03:12:24] -rw-r--r-- 1 boinc boinc       105 Jan  9 01:19 job.xml
[2026-01-09 03:12:24] -rw-r--r-- 2 boinc boinc 224188771 Jan  9 01:19 EVNT.47898824._000975.pool.root.1
[2026-01-09 03:12:24] -rw-r--r-- 2 boinc boinc    592402 Jan  9 01:19 input.tar.gz
[2026-01-09 03:12:24] -rw-r--r-- 2 boinc boinc     15847 Jan  9 01:19 start_atlas.sh
[2026-01-09 03:12:24] drwxrwx--x 2 boinc boinc      4096 Jan  9 01:19 shared
[2026-01-09 03:12:24] -rw-r--r-- 1 boinc boinc         0 Jan  9 01:19 boinc_setup_complete
[2026-01-09 03:12:24] -rw-r--r-- 1 boinc boinc      6449 Jan  9 01:19 init_data.xml
[2026-01-09 03:12:24] -rw-r--r-- 1 boinc boinc         0 Jan  9 01:19 boinc_lockfile
[2026-01-09 03:12:24] -rw-r--r-- 1 boinc boinc      2519 Jan  9 01:20 pandaJob.out
[2026-01-09 03:12:24] -rw------- 1 boinc boinc    989837 Jan  9 01:20 agis_schedconf.cvmfs.json
[2026-01-09 03:12:24] -rw------- 1 boinc boinc   1516240 Jan  9 01:20 agis_ddmendpoints.agis.ALL.json
[2026-01-09 03:12:24] drwx------ 5 boinc boinc      4096 Jan  9 01:20 pilot3
[2026-01-09 03:12:24] -rw-r--r-- 1 boinc boinc       529 Jan  9 03:11 boinc_task_state.xml
[2026-01-09 03:12:24] -rw------- 1 boinc boinc 218443664 Jan  9 03:11 HITS.47898826._024771.pool.root.1
[2026-01-09 03:12:24] -rw------- 1 boinc boinc      1013 Jan  9 03:11 memory_monitor_summary.json
[2026-01-09 03:12:24] -rw------- 1 boinc boinc    287320 Jan  9 03:11 log.47898826._024771.job.log.tgz.1
[2026-01-09 03:12:24] -rw------- 1 boinc boinc        95 Jan  9 03:11 pilot_heartbeat.json
[2026-01-09 03:12:24] -rw------- 1 boinc boinc      7756 Jan  9 03:11 heartbeat.json
[2026-01-09 03:12:24] -rw-r--r-- 1 boinc boinc      8192 Jan  9 03:12 boinc_mmap_file
[2026-01-09 03:12:24] -rw-r--r-- 1 boinc boinc        27 Jan  9 03:12 wrapper_checkpoint.txt
[2026-01-09 03:12:24] -rw------- 1 boinc boinc       747 Jan  9 03:12 pilotlog.txt
[2026-01-09 03:12:24] -rw------- 1 boinc boinc    966065 Jan  9 03:12 log.47898826._024771.job.log.1
[2026-01-09 03:12:24] -rw------- 1 boinc boinc       357 Jan  9 03:12 output.list
[2026-01-09 03:12:24] -rw-r--r-- 1 boinc boinc       620 Jan  9 03:12 runtime_log
[2026-01-09 03:12:24] -rw------- 1 boinc boinc   1269760 Jan  9 03:12 result.tar.gz
[2026-01-09 03:12:24] -rw------- 1 boinc boinc       663 Jan  9 03:12 wMHNDmj52x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAQkKDmeZj7Jn.diag
[2026-01-09 03:12:24] -rw-r--r-- 1 boinc boinc      8917 Jan  9 03:12 runtime_log.err
[2026-01-09 03:12:24] -rw-r--r-- 1 boinc boinc     11413 Jan  9 03:12 stderr.txt
[2026-01-09 03:12:24] HITS file was successfully produced:
[2026-01-09 03:12:24] -rw------- 1 boinc boinc 218443664 Jan  9 03:11 shared/HITS.pool.root.1
[2026-01-09 03:12:24]  *** Contents of shared directory: ***
[2026-01-09 03:12:24] total 434104
[2026-01-09 03:12:24] -rw-r--r-- 2 boinc boinc 224188771 Jan  9 01:19 ATLAS.root_0
[2026-01-09 03:12:24] -rw-r--r-- 2 boinc boinc    592402 Jan  9 01:19 input.tar.gz
[2026-01-09 03:12:24] -rw-r--r-- 2 boinc boinc     15847 Jan  9 01:19 start_atlas.sh
[2026-01-09 03:12:24] -rw------- 1 boinc boinc 218443664 Jan  9 03:11 HITS.pool.root.1
[2026-01-09 03:12:24] -rw------- 1 boinc boinc   1269760 Jan  9 03:12 result.tar.gz
03:12:25 (3439807): run_atlas exited; CPU time 19438.929797
03:12:25 (3439807): called boinc_finish(0)

</stderr_txt>
]]>

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