Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:49:08 (1334392): wrapper (7.7.26015): starting
16:49:08 (1334392): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 16:49:08] Arguments: --nthreads 4
[2026-01-08 16:49:08] Threads: 4
[2026-01-08 16:49:08] Checking for CVMFS
[2026-01-08 16:49:08] No cvmfs_config command found, will try listing directly
[2026-01-08 16:49:08] CVMFS is ok
[2026-01-08 16:49:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 16:49:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 16:49:08] Further information can be found at the LHC@home message board.
[2026-01-08 16:49:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 16:49:08] Checking for apptainer binary...
[2026-01-08 16:49:08] which: no apptainer in ((null))
[2026-01-08 16:49:08] apptainer is not installed, using version from CVMFS
[2026-01-08 16:49:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 16:49:08] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2026-01-08 16:49:08] apptainer works
[2026-01-08 16:49:08] Set ATHENA_PROC_NUMBER=4
[2026-01-08 16:49:08] Set ATHENA_CORE_NUMBER=4
[2026-01-08 16:49:08] Starting ATLAS job with PandaID=6963078106
[2026-01-08 16:49:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:36:00 (1431669): wrapper (7.7.26015): starting
18:36:00 (1431669): wrapper: running run_atlas (--nthreads 4)
[2026-01-08 18:36:00] Arguments: --nthreads 4
[2026-01-08 18:36:00] Threads: 4
[2026-01-08 18:36:00] This job has been restarted, cleaning up previous attempt
[2026-01-08 18:36:00] Checking for CVMFS
[2026-01-08 18:36:00] No cvmfs_config command found, will try listing directly
[2026-01-08 18:36:00] CVMFS is ok
[2026-01-08 18:36:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 18:36:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 18:36:00] Further information can be found at the LHC@home message board.
[2026-01-08 18:36:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 18:36:00] Checking for apptainer binary...
[2026-01-08 18:36:00] which: no apptainer in ((null))
[2026-01-08 18:36:00] apptainer is not installed, using version from CVMFS
[2026-01-08 18:36:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 18:36:01] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2026-01-08 18:36:01] apptainer works
[2026-01-08 18:36:01] Set ATHENA_PROC_NUMBER=4
[2026-01-08 18:36:01] Set ATHENA_CORE_NUMBER=4
[2026-01-08 18:36:01] Starting ATLAS job with PandaID=6963078106
[2026-01-08 18:36:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 23:13:38]  *** The last 200 lines of the pilot log: ***
[2026-01-08 23:13:38] 2026-01-08 22:10:39,983 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2471.68421875
[2026-01-08 23:13:38] 2026-01-08 22:10:39,997 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6963078106/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 23:13:38] 2026-01-08 22:10:39,998 | INFO     | extracted standard info from prmon json
[2026-01-08 23:13:38] 2026-01-08 22:10:39,998 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 23:13:38] 2026-01-08 22:10:39,999 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 23:13:38] 2026-01-08 22:10:39,999 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 23:13:38] 2026-01-08 22:10:39,999 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 23:13:38] 2026-01-08 22:10:40,007 | INFO     | fitting pss+swap vs Time
[2026-01-08 23:13:38] 2026-01-08 22:10:40,007 | INFO     | sum of square deviations: 6103286527.5
[2026-01-08 23:13:38] 2026-01-08 22:10:40,010 | INFO     | sum of deviations: -81901889974.00006
[2026-01-08 23:13:38] 2026-01-08 22:10:40,010 | INFO     | mean x: 1767902008.5
[2026-01-08 23:13:38] 2026-01-08 22:10:40,010 | INFO     | mean y: 2380257.940740741
[2026-01-08 23:13:38] 2026-01-08 22:10:40,010 | INFO     | intersect: 23726404213.324463
[2026-01-08 23:13:38] 2026-01-08 22:10:40,010 | INFO     | chi2: 2.529257508078669
[2026-01-08 23:13:38] 2026-01-08 22:10:40,011 | INFO     | sum of square deviations: 5770452380.0
[2026-01-08 23:13:38] 2026-01-08 22:10:40,013 | INFO     | sum of deviations: -63636809241.000015
[2026-01-08 23:13:38] 2026-01-08 22:10:40,013 | INFO     | mean x: 1767901856.0
[2026-01-08 23:13:38] 2026-01-08 22:10:40,013 | INFO     | mean y: 2388512.3358490565
[2026-01-08 23:13:38] 2026-01-08 22:10:40,013 | INFO     | intersect: 19498889957.70119
[2026-01-08 23:13:38] 2026-01-08 22:10:40,014 | INFO     | chi2: 1.7666445205010306
[2026-01-08 23:13:38] 2026-01-08 22:10:40,014 | INFO     | current chi2=1.7666445205010306 (change=30.151654591981476 %)
[2026-01-08 23:13:38] 2026-01-08 22:10:40,014 | INFO     | sum of square deviations: 5449944045.0
[2026-01-08 23:13:38] 2026-01-08 22:10:40,017 | INFO     | sum of deviations: -62083258343.50001
[2026-01-08 23:13:38] 2026-01-08 22:10:40,017 | INFO     | mean x: 1767901703.5
[2026-01-08 23:13:38] 2026-01-08 22:10:40,017 | INFO     | mean y: 2389251.6115384614
[2026-01-08 23:13:38] 2026-01-08 22:10:40,017 | INFO     | intersect: 20141513117.479458
[2026-01-08 23:13:38] 2026-01-08 22:10:40,018 | INFO     | chi2: 1.7620370713856355
[2026-01-08 23:13:38] 2026-01-08 22:10:40,018 | INFO     | current chi2=1.7620370713856355 (change=0.26080227583579885 %)
[2026-01-08 23:13:38] 2026-01-08 22:10:40,018 | INFO     | right removable region: 259
[2026-01-08 23:13:38] 2026-01-08 22:10:40,018 | INFO     | sum of square deviations: 5770452380.0
[2026-01-08 23:13:38] 2026-01-08 22:10:40,020 | INFO     | sum of deviations: -110395786573.0
[2026-01-08 23:13:38] 2026-01-08 22:10:40,020 | INFO     | mean x: 1767902161.0
[2026-01-08 23:13:38] 2026-01-08 22:10:40,021 | INFO     | mean y: 2393143.996226415
[2026-01-08 23:13:38] 2026-01-08 22:10:40,021 | INFO     | intersect: 33824516054.86955
[2026-01-08 23:13:38] 2026-01-08 22:10:40,021 | INFO     | chi2: 1.2853902294720707
[2026-01-08 23:13:38] 2026-01-08 22:10:40,021 | INFO     | current chi2=1.2853902294720707 (change=49.17914742305114 %)
[2026-01-08 23:13:38] 2026-01-08 22:10:40,022 | INFO     | sum of square deviations: 5449944045.0
[2026-01-08 23:13:38] 2026-01-08 22:10:40,024 | INFO     | sum of deviations: -98946610746.00003
[2026-01-08 23:13:38] 2026-01-08 22:10:40,024 | INFO     | mean x: 1767902313.5
[2026-01-08 23:13:38] 2026-01-08 22:10:40,024 | INFO     | mean y: 2387686.3
[2026-01-08 23:13:38] 2026-01-08 22:10:40,024 | INFO     | intersect: 32099587328.4364
[2026-01-08 23:13:38] 2026-01-08 22:10:40,025 | INFO     | chi2: 1.2659728331186502
[2026-01-08 23:13:38] 2026-01-08 22:10:40,025 | INFO     | current chi2=1.2659728331186502 (change=1.5106226815957335 %)
[2026-01-08 23:13:38] 2026-01-08 22:10:40,025 | INFO     | left removable region: 20
[2026-01-08 23:13:38] 2026-01-08 22:10:40,025 | INFO     | sum of square deviations: 4233158440.0
[2026-01-08 23:13:38] 2026-01-08 22:10:40,027 | INFO     | sum of deviations: -53112177047.00001
[2026-01-08 23:13:38] 2026-01-08 22:10:40,027 | INFO     | mean x: 1767902283.0
[2026-01-08 23:13:38] 2026-01-08 22:10:40,027 | INFO     | mean y: 2383315.150627615
[2026-01-08 23:13:38] 2026-01-08 22:10:40,027 | INFO     | intersect: 22183726250.306984
[2026-01-08 23:13:38] 2026-01-08 22:10:40,028 | INFO     | chi2: 0.3950522719494669
[2026-01-08 23:13:38] 2026-01-08 22:10:40,028 | INFO     | current memory leak: -12.55 B/s (using 239 data points, chi2=0.40)
[2026-01-08 23:13:38] 2026-01-08 22:10:40,029 | INFO     | could have reported an average CPU frequency of 2501 MHz (13 samples)
[2026-01-08 23:13:38] 2026-01-08 22:10:40,029 | INFO     | ..............................
[2026-01-08 23:13:38] 2026-01-08 22:10:40,029 | INFO     | . Timing measurements:
[2026-01-08 23:13:38] 2026-01-08 22:10:40,029 | INFO     | . get job = 0 s
[2026-01-08 23:13:38] 2026-01-08 22:10:40,029 | INFO     | . initial setup = 1 s
[2026-01-08 23:13:38] 2026-01-08 22:10:40,030 | INFO     | . payload setup = 7 s
[2026-01-08 23:13:38] 2026-01-08 22:10:40,030 | INFO     | . stage-in = 0 s
[2026-01-08 23:13:38] 2026-01-08 22:10:40,030 | INFO     | . payload execution = 16428 s
[2026-01-08 23:13:38] 2026-01-08 22:10:40,030 | INFO     | . stage-out = 1 s
[2026-01-08 23:13:38] 2026-01-08 22:10:40,030 | INFO     | . log creation = 0 s
[2026-01-08 23:13:38] 2026-01-08 22:10:40,030 | INFO     | ..............................
[2026-01-08 23:13:38] 2026-01-08 22:10:40,493 | INFO     | 
[2026-01-08 23:13:38] 2026-01-08 22:10:40,493 | INFO     | job summary report
[2026-01-08 23:13:38] 2026-01-08 22:10:40,493 | INFO     | --------------------------------------------------
[2026-01-08 23:13:38] 2026-01-08 22:10:40,493 | INFO     | PanDA job id: 6963078106
[2026-01-08 23:13:38] 2026-01-08 22:10:40,493 | INFO     | task id: 47898826
[2026-01-08 23:13:38] 2026-01-08 22:10:40,493 | INFO     | errors: (none)
[2026-01-08 23:13:38] 2026-01-08 22:10:40,493 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 23:13:38] 2026-01-08 22:10:40,494 | INFO     | pilot state: finished 
[2026-01-08 23:13:38] 2026-01-08 22:10:40,494 | INFO     | transexitcode: 0
[2026-01-08 23:13:38] 2026-01-08 22:10:40,494 | INFO     | exeerrorcode: 0
[2026-01-08 23:13:38] 2026-01-08 22:10:40,494 | INFO     | exeerrordiag: 
[2026-01-08 23:13:38] 2026-01-08 22:10:40,494 | INFO     | exitcode: 0
[2026-01-08 23:13:38] 2026-01-08 22:10:40,494 | INFO     | exitmsg: OK
[2026-01-08 23:13:38] 2026-01-08 22:10:40,494 | INFO     | cpuconsumptiontime: 63340 s
[2026-01-08 23:13:38] 2026-01-08 22:10:40,494 | INFO     | nevents: 400
[2026-01-08 23:13:38] 2026-01-08 22:10:40,494 | INFO     | neventsw: 0
[2026-01-08 23:13:38] 2026-01-08 22:10:40,494 | INFO     | pid: 1442749
[2026-01-08 23:13:38] 2026-01-08 22:10:40,494 | INFO     | pgrp: 1442749
[2026-01-08 23:13:38] 2026-01-08 22:10:40,494 | INFO     | corecount: 4
[2026-01-08 23:13:38] 2026-01-08 22:10:40,494 | INFO     | event service: False
[2026-01-08 23:13:38] 2026-01-08 22:10:40,494 | INFO     | sizes: {0: 2283980, 1: 2283980, 6: 2284270, 11: 2284298, 16439: 2315819, 16440: 2315818, 16441: 2325022, 16442: 2325078, 16448: 2325272}
[2026-01-08 23:13:38] 2026-01-08 22:10:40,495 | INFO     | --------------------------------------------------
[2026-01-08 23:13:38] 2026-01-08 22:10:40,495 | INFO     | 
[2026-01-08 23:13:38] 2026-01-08 22:10:40,495 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2026-01-08 23:13:38] 2026-01-08 22:10:40,518 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,518 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,518 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,518 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,518 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,519 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,519 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,519 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,519 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,519 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,519 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,519 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,519 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,519 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,519 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,519 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,519 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,520 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 23:13:38] 2026-01-08 22:10:40,520 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,520 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 23:13:38] 2026-01-08 22:10:40,520 | INFO     | job 6963078106 has completed (purged errors)
[2026-01-08 23:13:38] 2026-01-08 22:10:40,520 | INFO     | overall cleanup function is called
[2026-01-08 23:13:38] 2026-01-08 22:10:41,528 | INFO     | --- collectZombieJob: --- 10, [1442749]
[2026-01-08 23:13:38] 2026-01-08 22:10:41,528 | INFO     | zombie collector waiting for pid 1442749
[2026-01-08 23:13:38] 2026-01-08 22:10:41,528 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 23:13:38] 2026-01-08 22:10:41,528 | INFO     | collected zombie processes
[2026-01-08 23:13:38] 2026-01-08 22:10:41,528 | INFO     | will attempt to kill all subprocesses of pid=1442749
[2026-01-08 23:13:38] 2026-01-08 22:10:41,952 | INFO     | process IDs to be killed: [1442749] (in reverse order)
[2026-01-08 23:13:38] 2026-01-08 22:10:42,080 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 23:13:38] 2026-01-08 22:10:42,081 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 23:13:38] 2026-01-08 22:10:42,095 | INFO     | did not find any defunct processes belonging to 1442749
[2026-01-08 23:13:38] 2026-01-08 22:10:42,110 | INFO     | did not find any defunct processes belonging to 1442749
[2026-01-08 23:13:38] 2026-01-08 22:10:42,111 | INFO     | ready for new job
[2026-01-08 23:13:38] 2026-01-08 22:10:42,111 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 23:13:38] 2026-01-08 22:10:42,114 | INFO     | ***************************************
[2026-01-08 23:13:38] 2026-01-08 22:10:42,114 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 23:13:38] 2026-01-08 22:10:42,114 | INFO     | ***************************************
[2026-01-08 23:13:38] 2026-01-08 22:10:42,114 | INFO     | 
[2026-01-08 23:13:38] 2026-01-08 22:10:42,118 | INFO     | architecture information:
[2026-01-08 23:13:38] 2026-01-08 22:10:42,119 | INFO     | executing command: cat /etc/os-release
[2026-01-08 23:13:38] 2026-01-08 22:10:42,138 | INFO     | cat /etc/os-release:
[2026-01-08 23:13:38] NAME="CentOS Linux"
[2026-01-08 23:13:38] VERSION="7 (Core)"
[2026-01-08 23:13:38] ID="centos"
[2026-01-08 23:13:38] ID_LIKE="rhel fedora"
[2026-01-08 23:13:38] VERSION_ID="7"
[2026-01-08 23:13:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 23:13:38] ANSI_COLOR="0;31"
[2026-01-08 23:13:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 23:13:38] HOME_URL="https://www.centos.org/"
[2026-01-08 23:13:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 23:13:38] 
[2026-01-08 23:13:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 23:13:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 23:13:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 23:13:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 23:13:38] 
[2026-01-08 23:13:38] 2026-01-08 22:10:42,138 | INFO     | ***************************************
[2026-01-08 23:13:38] 2026-01-08 22:10:42,641 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2026-01-08 23:13:38] 2026-01-08 22:10:42,659 | INFO     | sufficient remaining disk space (688873537536 B)
[2026-01-08 23:13:38] 2026-01-08 22:10:42,660 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 23:13:38] 2026-01-08 22:10:42,660 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 23:13:38] 2026-01-08 22:10:42,660 | INFO     | update_server=False
[2026-01-08 23:13:38] 2026-01-08 22:10:42,660 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 23:13:38] 2026-01-08 22:10:42,860 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 23:13:38] 2026-01-08 22:10:42,860 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 23:13:38] 2026-01-08 22:10:42,860 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 23:13:38] 2026-01-08 22:10:42,860 | INFO     | will abort loop
[2026-01-08 23:13:38] 2026-01-08 22:10:43,023 | INFO     | all payload control threads have been joined
[2026-01-08 23:13:38] 2026-01-08 22:10:43,149 | INFO     | all data control threads have been joined
[2026-01-08 23:13:38] 2026-01-08 22:10:43,212 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 23:13:38] 2026-01-08 22:10:43,665 | INFO     | [job] retrieve thread has finished
[2026-01-08 23:13:38] 2026-01-08 22:10:43,795 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 23:13:38] 2026-01-08 22:10:43,865 | INFO     | [job] job monitor thread has finished
[2026-01-08 23:13:38] 2026-01-08 22:10:44,028 | INFO     | [payload] control thread has finished
[2026-01-08 23:13:38] 2026-01-08 22:10:44,082 | INFO     | [data] copytool_in thread has finished
[2026-01-08 23:13:38] 2026-01-08 22:10:44,154 | INFO     | [data] control thread has finished
[2026-01-08 23:13:38] 2026-01-08 22:10:44,163 | INFO     | [job] validate thread has finished
[2026-01-08 23:13:38] 2026-01-08 22:10:44,325 | INFO     | all job control threads have been joined
[2026-01-08 23:13:38] 2026-01-08 22:10:44,666 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 23:13:38] 2026-01-08 22:10:44,867 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 23:13:38] 2026-01-08 22:10:45,014 | INFO     | [payload] failed_post thread has finished
[2026-01-08 23:13:38] 2026-01-08 22:10:45,083 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 23:13:38] 2026-01-08 22:10:45,149 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 23:13:38] 2026-01-08 22:10:45,217 | INFO     | [data] copytool_out thread has finished
[2026-01-08 23:13:38] 2026-01-08 22:10:45,243 | INFO     | [payload] validate_post thread has finished
[2026-01-08 23:13:38] 2026-01-08 22:10:45,330 | INFO     | [job] control thread has finished
[2026-01-08 23:13:38] 2026-01-08 22:10:46,153 | INFO     | [job] queue monitor thread has finished
[2026-01-08 23:13:38] 2026-01-08 22:10:48,672 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 23:13:38] 2026-01-08 22:10:53,298 | INFO     | job.realtimelogging is not enabled
[2026-01-08 23:13:38] 2026-01-08 22:10:54,300 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 23:13:38] 2026-01-08 22:11:12,397 | INFO     | PID=1435850 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 23:13:38] 2026-01-08 22:11:12,398 | INFO     | .. there are 3 such processes running
[2026-01-08 23:13:38] 2026-01-08 22:11:12,398 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 23:13:38] 2026-01-08 22:11:12,398 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 23:13:38] 2026-01-08 22:11:12,398 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 23:13:38] 2026-01-08 22:11:41,332 | INFO     | [monitor] cgroup control has ended
[2026-01-08 23:13:38] 2026-01-08 22:11:42,728 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22664103667520)>', '<ExcThread(monitor, started 22663665800960)>']
[2026-01-08 23:13:38] 2026-01-08 22:11:43,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 23:13:38] 2026-01-08 22:11:43,542 | INFO     | [monitor] control thread has ended
[2026-01-08 23:13:38] 2026-01-08 22:11:47,753 | INFO     | all workflow threads have been joined
[2026-01-08 23:13:38] 2026-01-08 22:11:47,753 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 23:13:38] 2026-01-08 22:11:47,753 | INFO     | traces error code: 0
[2026-01-08 23:13:38] 2026-01-08 22:11:47,754 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 23:13:38] 2026-01-08 22:11:47,944 [wrapper] ==== pilot stdout END ====
[2026-01-08 23:13:38] 2026-01-08 22:11:47,947 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 23:13:38] 2026-01-08 22:11:47,951 [wrapper] pilotpid: 1435850
[2026-01-08 23:13:38] 2026-01-08 22:11:47,954 [wrapper] Pilot exit status: 0
[2026-01-08 23:13:38] 2026-01-08 22:11:47,967 [wrapper] pandaids: 6963078106 6963078106
[2026-01-08 23:13:38] 2026-01-08 22:11:48,056 [wrapper] cleanup supervisor_pilot 1645090 1435851
[2026-01-08 23:13:38] 2026-01-08 22:11:48,059 [wrapper] Test setup, not cleaning
[2026-01-08 23:13:38] 2026-01-08 22:11:48,062 [wrapper] apfmon messages muted
[2026-01-08 23:13:38] 2026-01-08 22:11:48,065 [wrapper] ==== wrapper stdout END ====
[2026-01-08 23:13:38] 2026-01-08 22:11:48,068 [wrapper] ==== wrapper stderr END ====
[2026-01-08 23:13:38]  *** Error codes and diagnostics ***
[2026-01-08 23:13:38]     "exeErrorCode": 0,
[2026-01-08 23:13:38]     "exeErrorDiag": "",
[2026-01-08 23:13:38]     "pilotErrorCode": 0,
[2026-01-08 23:13:38]     "pilotErrorDiag": "",
[2026-01-08 23:13:38]  *** Listing of results directory ***
[2026-01-08 23:13:38] total 668428
[2026-01-08 23:13:38] drwx------ 5 boinc boinc      4096 Dec  3 15:30 pilot3
[2026-01-08 23:13:38] -rwx------ 1 boinc boinc     36322 Jan  8 12:07 runpilot2-wrapper.sh
[2026-01-08 23:13:38] -rw-r--r-- 1 boinc boinc      5112 Jan  8 12:09 queuedata.json
[2026-01-08 23:13:38] -rw-r--r-- 1 boinc boinc    579449 Jan  8 12:09 pilot3.tar.gz
[2026-01-08 23:13:38] -rw-r--r-- 1 boinc boinc       100 Jan  8 15:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 23:13:38] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 15:51 run_atlas
[2026-01-08 23:13:38] -rw-r--r-- 1 boinc boinc       105 Jan  8 15:51 job.xml
[2026-01-08 23:13:38] -rw-r--r-- 3 boinc boinc 225617635 Jan  8 16:49 EVNT.47898824._001000.pool.root.1
[2026-01-08 23:13:38] -rw-r--r-- 3 boinc boinc 225617635 Jan  8 16:49 ATLAS.root_0
[2026-01-08 23:13:38] drwxrwx--x 2 boinc boinc      4096 Jan  8 16:49 shared
[2026-01-08 23:13:38] -rw-r--r-- 2 boinc boinc    592398 Jan  8 16:49 input.tar.gz
[2026-01-08 23:13:38] -rw-r--r-- 2 boinc boinc     15847 Jan  8 16:49 start_atlas.sh
[2026-01-08 23:13:38] -rw-r--r-- 1 boinc boinc         0 Jan  8 16:49 boinc_lockfile
[2026-01-08 23:13:38] -rw-r--r-- 1 boinc boinc      2519 Jan  8 18:36 pandaJob.out
[2026-01-08 23:13:38] -rw------- 1 boinc boinc    989837 Jan  8 18:36 agis_schedconf.cvmfs.json
[2026-01-08 23:13:38] -rw-r--r-- 1 boinc boinc      6644 Jan  8 20:42 init_data.xml
[2026-01-08 23:13:38] -rw------- 1 boinc boinc 223834512 Jan  8 23:09 HITS.47898826._024483.pool.root.1
[2026-01-08 23:13:38] -rw-r--r-- 1 boinc boinc       529 Jan  8 23:10 boinc_task_state.xml
[2026-01-08 23:13:38] -rw------- 1 boinc boinc      1031 Jan  8 23:10 memory_monitor_summary.json
[2026-01-08 23:13:38] -rw------- 1 boinc boinc   1516240 Jan  8 23:10 agis_ddmendpoints.agis.ALL.json
[2026-01-08 23:13:38] -rw------- 1 boinc boinc    430136 Jan  8 23:10 log.47898826._024483.job.log.tgz.1
[2026-01-08 23:13:38] -rw------- 1 boinc boinc        96 Jan  8 23:10 pilot_heartbeat.json
[2026-01-08 23:13:38] -rw------- 1 boinc boinc      7830 Jan  8 23:10 heartbeat.json
[2026-01-08 23:13:38] -rw------- 1 boinc boinc      5091 Jan  8 23:11 pilotlog.txt
[2026-01-08 23:13:38] -rw------- 1 boinc boinc   2308339 Jan  8 23:11 log.47898826._024483.job.log.1
[2026-01-08 23:13:38] -rw------- 1 boinc boinc       357 Jan  8 23:11 output.list
[2026-01-08 23:13:38] -rw-r--r-- 1 boinc boinc       620 Jan  8 23:11 runtime_log
[2026-01-08 23:13:38] -rw------- 1 boinc boinc   2754560 Jan  8 23:11 result.tar.gz
[2026-01-08 23:13:38] -rw------- 1 boinc boinc       791 Jan  8 23:11 uLUNDmy22x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmA5eKDmIjmXjn.diag
[2026-01-08 23:13:38] -rw-r--r-- 1 boinc boinc      9283 Jan  8 23:11 runtime_log.err
[2026-01-08 23:13:38] -rw-r--r-- 1 boinc boinc        26 Jan  8 23:13 wrapper_checkpoint.txt
[2026-01-08 23:13:38] -rw-r--r-- 1 boinc boinc      8192 Jan  8 23:13 boinc_mmap_file
[2026-01-08 23:13:38] -rw-r--r-- 1 boinc boinc     22804 Jan  8 23:13 stderr.txt
[2026-01-08 23:13:38] HITS file was successfully produced:
[2026-01-08 23:13:38] -rw------- 1 boinc boinc 223834512 Jan  8 23:09 shared/HITS.pool.root.1
[2026-01-08 23:13:38]  *** Contents of shared directory: ***
[2026-01-08 23:13:38] total 442220
[2026-01-08 23:13:38] -rw-r--r-- 3 boinc boinc 225617635 Jan  8 16:49 ATLAS.root_0
[2026-01-08 23:13:38] -rw-r--r-- 2 boinc boinc    592398 Jan  8 16:49 input.tar.gz
[2026-01-08 23:13:38] -rw-r--r-- 2 boinc boinc     15847 Jan  8 16:49 start_atlas.sh
[2026-01-08 23:13:38] -rw------- 1 boinc boinc 223834512 Jan  8 23:09 HITS.pool.root.1
[2026-01-08 23:13:38] -rw------- 1 boinc boinc   2754560 Jan  8 23:11 result.tar.gz
23:13:40 (1431669): run_atlas exited; CPU time 64151.968987
23:13:40 (1431669): called boinc_finish(0)

</stderr_txt>
]]>

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