Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:24:38 (680826): wrapper (7.7.26015): starting
14:24:38 (680826): wrapper: running run_atlas (--nthreads 4)
[2026-01-11 14:24:38] Arguments: --nthreads 4
[2026-01-11 14:24:38] Threads: 4
[2026-01-11 14:24:38] Checking for CVMFS
[2026-01-11 14:24:38] No cvmfs_config command found, will try listing directly
[2026-01-11 14:24:38] CVMFS is ok
[2026-01-11 14:24:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 14:24:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 14:24:38] Further information can be found at the LHC@home message board.
[2026-01-11 14:24:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 14:24:38] Checking for apptainer binary...
[2026-01-11 14:24:38] which: no apptainer in ((null))
[2026-01-11 14:24:38] apptainer is not installed, using version from CVMFS
[2026-01-11 14:24:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 14:24:39] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2026-01-11 14:24:39] apptainer works
[2026-01-11 14:24:39] Set ATHENA_PROC_NUMBER=4
[2026-01-11 14:24:39] Set ATHENA_CORE_NUMBER=4
[2026-01-11 14:24:39] Starting ATLAS job with PandaID=6963078101
[2026-01-11 14:24:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 18:51:36]  *** The last 200 lines of the pilot log: ***
[2026-01-11 18:51:36] 2026-01-11 17:35:26,099 | INFO     | time since job start (15036s) is within the limit (174528.0s)
[2026-01-11 18:51:36] 2026-01-11 17:35:27,618 | INFO     | monitor loop #1089: job 0:6963078101 is in state 'finished'
[2026-01-11 18:51:36] 2026-01-11 17:35:27,618 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 18:51:36] 2026-01-11 17:35:28,102 | INFO     | time since job start (15038s) is within the limit (174528.0s)
[2026-01-11 18:51:36] 2026-01-11 17:35:30,107 | INFO     | time since job start (15040s) is within the limit (174528.0s)
[2026-01-11 18:51:36] 2026-01-11 17:35:30,121 | INFO     | monitor loop #1090: job 0:6963078101 is in state 'finished'
[2026-01-11 18:51:36] 2026-01-11 17:35:30,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 18:51:36] 2026-01-11 17:35:30,753 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-11 18:51:36] 2026-01-11 17:35:30,764 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2642.253750000001
[2026-01-11 18:51:36] 2026-01-11 17:35:30,777 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6963078101/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 18:51:36] 2026-01-11 17:35:30,777 | INFO     | extracted standard info from prmon json
[2026-01-11 18:51:36] 2026-01-11 17:35:30,778 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 18:51:36] 2026-01-11 17:35:30,778 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 18:51:36] 2026-01-11 17:35:30,778 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 18:51:36] 2026-01-11 17:35:30,778 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 18:51:36] 2026-01-11 17:35:30,783 | INFO     | fitting pss+swap vs Time
[2026-01-11 18:51:36] 2026-01-11 17:35:30,784 | INFO     | sum of square deviations: 4616114457.5
[2026-01-11 18:51:36] 2026-01-11 17:35:30,785 | INFO     | sum of deviations: -73393487852.00003
[2026-01-11 18:51:36] 2026-01-11 17:35:30,786 | INFO     | mean x: 1768145388.5
[2026-01-11 18:51:36] 2026-01-11 17:35:30,786 | INFO     | mean y: 2411401.4065040653
[2026-01-11 18:51:36] 2026-01-11 17:35:30,786 | INFO     | intersect: 28114876611.31939
[2026-01-11 18:51:36] 2026-01-11 17:35:30,786 | INFO     | chi2: 1.7418234967117028
[2026-01-11 18:51:36] 2026-01-11 17:35:30,787 | INFO     | sum of square deviations: 4340323240.0
[2026-01-11 18:51:36] 2026-01-11 17:35:30,789 | INFO     | sum of deviations: -71377047452.0
[2026-01-11 18:51:36] 2026-01-11 17:35:30,789 | INFO     | mean x: 1768145236.0
[2026-01-11 18:51:36] 2026-01-11 17:35:30,789 | INFO     | mean y: 2412516.5684647304
[2026-01-11 18:51:36] 2026-01-11 17:35:30,789 | INFO     | intersect: 29079736815.576145
[2026-01-11 18:51:36] 2026-01-11 17:35:30,789 | INFO     | chi2: 1.735002607572037
[2026-01-11 18:51:36] 2026-01-11 17:35:30,790 | INFO     | current chi2=1.735002607572037 (change=0.3915947369261305 %)
[2026-01-11 18:51:36] 2026-01-11 17:35:30,790 | INFO     | right removable region: 240
[2026-01-11 18:51:36] 2026-01-11 17:35:30,790 | INFO     | sum of square deviations: 4340323240.0
[2026-01-11 18:51:36] 2026-01-11 17:35:30,792 | INFO     | sum of deviations: -100405765027.99997
[2026-01-11 18:51:36] 2026-01-11 17:35:30,792 | INFO     | mean x: 1768145541.0
[2026-01-11 18:51:36] 2026-01-11 17:35:30,792 | INFO     | mean y: 2426135.5767634856
[2026-01-11 18:51:36] 2026-01-11 17:35:30,792 | INFO     | intersect: 40905371816.86475
[2026-01-11 18:51:36] 2026-01-11 17:35:30,792 | INFO     | chi2: 0.4729380634370487
[2026-01-11 18:51:36] 2026-01-11 17:35:30,793 | INFO     | current chi2=0.4729380634370487 (change=72.84810634775086 %)
[2026-01-11 18:51:36] 2026-01-11 17:35:30,793 | INFO     | sum of square deviations: 4075741535.0
[2026-01-11 18:51:36] 2026-01-11 17:35:30,795 | INFO     | sum of deviations: -91151665325.5
[2026-01-11 18:51:36] 2026-01-11 17:35:30,795 | INFO     | mean x: 1768145693.5
[2026-01-11 18:51:36] 2026-01-11 17:35:30,795 | INFO     | mean y: 2420789.8940677964
[2026-01-11 18:51:36] 2026-01-11 17:35:30,795 | INFO     | intersect: 39546003992.26612
[2026-01-11 18:51:36] 2026-01-11 17:35:30,795 | INFO     | chi2: 0.46482105497182974
[2026-01-11 18:51:36] 2026-01-11 17:35:30,795 | INFO     | current chi2=0.46482105497182974 (change=1.7162941815740285 %)
[2026-01-11 18:51:36] 2026-01-11 17:35:30,796 | INFO     | left removable region: 20
[2026-01-11 18:51:36] 2026-01-11 17:35:30,796 | INFO     | sum of square deviations: 3301699115.0
[2026-01-11 18:51:36] 2026-01-11 17:35:30,797 | INFO     | sum of deviations: -66387438077.00001
[2026-01-11 18:51:36] 2026-01-11 17:35:30,798 | INFO     | mean x: 1768145815.5
[2026-01-11 18:51:36] 2026-01-11 17:35:30,798 | INFO     | mean y: 2408153.9
[2026-01-11 18:51:36] 2026-01-11 17:35:30,798 | INFO     | intersect: 35554609232.529465
[2026-01-11 18:51:36] 2026-01-11 17:35:30,798 | INFO     | chi2: 0.4122518730678024
[2026-01-11 18:51:36] 2026-01-11 17:35:30,799 | INFO     | current memory leak: -20.11 B/s (using 220 data points, chi2=0.41)
[2026-01-11 18:51:36] 2026-01-11 17:35:30,799 | INFO     | could have reported an average CPU frequency of 2566 MHz (12 samples)
[2026-01-11 18:51:36] 2026-01-11 17:35:30,799 | INFO     | ..............................
[2026-01-11 18:51:36] 2026-01-11 17:35:30,800 | INFO     | . Timing measurements:
[2026-01-11 18:51:36] 2026-01-11 17:35:30,800 | INFO     | . get job = 0 s
[2026-01-11 18:51:36] 2026-01-11 17:35:30,800 | INFO     | . initial setup = 1 s
[2026-01-11 18:51:36] 2026-01-11 17:35:30,800 | INFO     | . payload setup = 6 s
[2026-01-11 18:51:36] 2026-01-11 17:35:30,800 | INFO     | . stage-in = 0 s
[2026-01-11 18:51:36] 2026-01-11 17:35:30,800 | INFO     | . payload execution = 15006 s
[2026-01-11 18:51:36] 2026-01-11 17:35:30,800 | INFO     | . stage-out = 1 s
[2026-01-11 18:51:36] 2026-01-11 17:35:30,800 | INFO     | . log creation = 0 s
[2026-01-11 18:51:36] 2026-01-11 17:35:30,800 | INFO     | ..............................
[2026-01-11 18:51:36] 2026-01-11 17:35:30,899 | INFO     | 
[2026-01-11 18:51:36] 2026-01-11 17:35:30,900 | INFO     | job summary report
[2026-01-11 18:51:36] 2026-01-11 17:35:30,900 | INFO     | --------------------------------------------------
[2026-01-11 18:51:36] 2026-01-11 17:35:30,900 | INFO     | PanDA job id: 6963078101
[2026-01-11 18:51:36] 2026-01-11 17:35:30,900 | INFO     | task id: 47898826
[2026-01-11 18:51:36] 2026-01-11 17:35:30,900 | INFO     | errors: (none)
[2026-01-11 18:51:36] 2026-01-11 17:35:30,900 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 18:51:36] 2026-01-11 17:35:30,900 | INFO     | pilot state: finished 
[2026-01-11 18:51:36] 2026-01-11 17:35:30,900 | INFO     | transexitcode: 0
[2026-01-11 18:51:36] 2026-01-11 17:35:30,900 | INFO     | exeerrorcode: 0
[2026-01-11 18:51:36] 2026-01-11 17:35:30,900 | INFO     | exeerrordiag: 
[2026-01-11 18:51:36] 2026-01-11 17:35:30,900 | INFO     | exitcode: 0
[2026-01-11 18:51:36] 2026-01-11 17:35:30,900 | INFO     | exitmsg: OK
[2026-01-11 18:51:36] 2026-01-11 17:35:30,901 | INFO     | cpuconsumptiontime: 58223 s
[2026-01-11 18:51:36] 2026-01-11 17:35:30,901 | INFO     | nevents: 400
[2026-01-11 18:51:36] 2026-01-11 17:35:30,901 | INFO     | neventsw: 0
[2026-01-11 18:51:36] 2026-01-11 17:35:30,901 | INFO     | pid: 692161
[2026-01-11 18:51:36] 2026-01-11 17:35:30,901 | INFO     | pgrp: 692161
[2026-01-11 18:51:36] 2026-01-11 17:35:30,901 | INFO     | corecount: 4
[2026-01-11 18:51:36] 2026-01-11 17:35:30,901 | INFO     | event service: False
[2026-01-11 18:51:36] 2026-01-11 17:35:30,901 | INFO     | sizes: {0: 2283978, 5: 2284240, 11: 2284296, 15016: 2315370, 15018: 2324390, 15019: 2324446, 15025: 2324768}
[2026-01-11 18:51:36] 2026-01-11 17:35:30,901 | INFO     | --------------------------------------------------
[2026-01-11 18:51:36] 2026-01-11 17:35:30,901 | INFO     | 
[2026-01-11 18:51:36] 2026-01-11 17:35:30,901 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2026-01-11 18:51:36] 2026-01-11 17:35:30,921 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,922 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,922 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,922 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,922 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,922 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,922 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,922 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,922 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,922 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,922 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,922 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,923 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,923 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,923 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,923 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,923 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,923 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 18:51:36] 2026-01-11 17:35:30,923 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,923 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 18:51:36] 2026-01-11 17:35:30,923 | INFO     | job 6963078101 has completed (purged errors)
[2026-01-11 18:51:36] 2026-01-11 17:35:30,924 | INFO     | overall cleanup function is called
[2026-01-11 18:51:36] 2026-01-11 17:35:31,594 | INFO     | PID=684588 has CPU usage=15.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 18:51:36] 2026-01-11 17:35:31,594 | INFO     | .. there are 3 such processes running
[2026-01-11 18:51:36] 2026-01-11 17:35:31,931 | INFO     | --- collectZombieJob: --- 10, [692161]
[2026-01-11 18:51:36] 2026-01-11 17:35:31,931 | INFO     | zombie collector waiting for pid 692161
[2026-01-11 18:51:36] 2026-01-11 17:35:31,932 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 18:51:36] 2026-01-11 17:35:31,932 | INFO     | collected zombie processes
[2026-01-11 18:51:36] 2026-01-11 17:35:31,932 | INFO     | will attempt to kill all subprocesses of pid=692161
[2026-01-11 18:51:36] 2026-01-11 17:35:32,306 | INFO     | process IDs to be killed: [692161] (in reverse order)
[2026-01-11 18:51:36] 2026-01-11 17:35:32,415 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 18:51:36] 2026-01-11 17:35:32,416 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 18:51:36] 2026-01-11 17:35:32,429 | INFO     | did not find any defunct processes belonging to 692161
[2026-01-11 18:51:36] 2026-01-11 17:35:32,441 | INFO     | did not find any defunct processes belonging to 692161
[2026-01-11 18:51:36] 2026-01-11 17:35:32,442 | INFO     | ready for new job
[2026-01-11 18:51:36] 2026-01-11 17:35:32,442 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 18:51:36] 2026-01-11 17:35:32,444 | INFO     | ***************************************
[2026-01-11 18:51:36] 2026-01-11 17:35:32,444 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 18:51:36] 2026-01-11 17:35:32,445 | INFO     | ***************************************
[2026-01-11 18:51:36] 2026-01-11 17:35:32,445 | INFO     | 
[2026-01-11 18:51:36] 2026-01-11 17:35:32,448 | INFO     | architecture information:
[2026-01-11 18:51:36] 2026-01-11 17:35:32,449 | INFO     | executing command: cat /etc/os-release
[2026-01-11 18:51:36] 2026-01-11 17:35:32,464 | INFO     | cat /etc/os-release:
[2026-01-11 18:51:36] NAME="CentOS Linux"
[2026-01-11 18:51:36] VERSION="7 (Core)"
[2026-01-11 18:51:36] ID="centos"
[2026-01-11 18:51:36] ID_LIKE="rhel fedora"
[2026-01-11 18:51:36] VERSION_ID="7"
[2026-01-11 18:51:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 18:51:36] ANSI_COLOR="0;31"
[2026-01-11 18:51:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 18:51:36] HOME_URL="https://www.centos.org/"
[2026-01-11 18:51:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 18:51:36] 
[2026-01-11 18:51:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 18:51:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 18:51:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 18:51:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 18:51:36] 
[2026-01-11 18:51:36] 2026-01-11 17:35:32,465 | INFO     | ***************************************
[2026-01-11 18:51:36] 2026-01-11 17:35:32,967 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2026-01-11 18:51:36] 2026-01-11 17:35:32,984 | INFO     | sufficient remaining disk space (699123367936 B)
[2026-01-11 18:51:36] 2026-01-11 17:35:32,984 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 18:51:36] 2026-01-11 17:35:32,984 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 18:51:36] 2026-01-11 17:35:32,985 | INFO     | update_server=False
[2026-01-11 18:51:36] 2026-01-11 17:35:32,985 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 18:51:36] 2026-01-11 17:35:32,985 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 18:51:36] 2026-01-11 17:35:33,625 | INFO     | all payload control threads have been joined
[2026-01-11 18:51:36] 2026-01-11 17:35:33,629 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 18:51:36] 2026-01-11 17:35:33,629 | INFO     | aborting loop
[2026-01-11 18:51:36] 2026-01-11 17:35:33,734 | INFO     | all job control threads have been joined
[2026-01-11 18:51:36] 2026-01-11 17:35:33,834 | INFO     | all data control threads have been joined
[2026-01-11 18:51:36] 2026-01-11 17:35:33,987 | INFO     | [job] retrieve thread has finished
[2026-01-11 18:51:36] 2026-01-11 17:35:34,320 | INFO     | [data] copytool_in thread has finished
[2026-01-11 18:51:36] 2026-01-11 17:35:34,631 | INFO     | [payload] control thread has finished
[2026-01-11 18:51:36] 2026-01-11 17:35:34,633 | INFO     | [job] job monitor thread has finished
[2026-01-11 18:51:36] 2026-01-11 17:35:34,648 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 18:51:36] 2026-01-11 17:35:34,739 | INFO     | [job] control thread has finished
[2026-01-11 18:51:36] 2026-01-11 17:35:34,805 | INFO     | [job] validate thread has finished
[2026-01-11 18:51:36] 2026-01-11 17:35:34,806 | INFO     | [payload] failed_post thread has finished
[2026-01-11 18:51:36] 2026-01-11 17:35:34,840 | INFO     | [data] control thread has finished
[2026-01-11 18:51:36] 2026-01-11 17:35:34,894 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 18:51:36] 2026-01-11 17:35:34,991 | INFO     | [data] copytool_out thread has finished
[2026-01-11 18:51:36] 2026-01-11 17:35:35,286 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 18:51:36] 2026-01-11 17:35:35,302 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 18:51:36] 2026-01-11 17:35:35,353 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 18:51:36] 2026-01-11 17:35:35,530 | INFO     | [payload] validate_post thread has finished
[2026-01-11 18:51:36] 2026-01-11 17:35:35,905 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 18:51:36] 2026-01-11 17:35:36,911 | INFO     | [job] queue monitor thread has finished
[2026-01-11 18:51:36] 2026-01-11 17:35:38,900 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 18:51:36] 2026-01-11 17:36:04,065 | INFO     | PID=684588 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 18:51:36] 2026-01-11 17:36:04,065 | INFO     | .. there are 3 such processes running
[2026-01-11 18:51:36] 2026-01-11 17:36:04,065 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 18:51:36] 2026-01-11 17:36:04,066 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 18:51:36] 2026-01-11 17:36:04,066 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 18:51:36] 2026-01-11 17:36:13,465 | INFO     | [monitor] cgroup control has ended
[2026-01-11 18:51:36] 2026-01-11 17:36:13,534 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23107740366656)>', '<ExcThread(monitor, started 23107502835456)>']
[2026-01-11 18:51:36] 2026-01-11 17:36:14,115 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 18:51:36] 2026-01-11 17:36:14,116 | INFO     | [monitor] control thread has ended
[2026-01-11 18:51:36] 2026-01-11 17:36:18,553 | INFO     | all workflow threads have been joined
[2026-01-11 18:51:36] 2026-01-11 17:36:18,553 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 18:51:36] 2026-01-11 17:36:18,553 | INFO     | traces error code: 0
[2026-01-11 18:51:36] 2026-01-11 17:36:18,554 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 18:51:36] 2026-01-11 17:36:18,702 [wrapper] ==== pilot stdout END ====
[2026-01-11 18:51:36] 2026-01-11 17:36:18,705 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 18:51:36] 2026-01-11 17:36:18,707 [wrapper] pilotpid: 684588
[2026-01-11 18:51:36] 2026-01-11 17:36:18,710 [wrapper] Pilot exit status: 0
[2026-01-11 18:51:36] 2026-01-11 17:36:18,721 [wrapper] pandaids: 6963078101
[2026-01-11 18:51:36] 2026-01-11 17:36:18,798 [wrapper] cleanup supervisor_pilot  873929 684589
[2026-01-11 18:51:36] 2026-01-11 17:36:18,801 [wrapper] Test setup, not cleaning
[2026-01-11 18:51:36] 2026-01-11 17:36:18,804 [wrapper] apfmon messages muted
[2026-01-11 18:51:36] 2026-01-11 17:36:18,806 [wrapper] ==== wrapper stdout END ====
[2026-01-11 18:51:36] 2026-01-11 17:36:18,809 [wrapper] ==== wrapper stderr END ====
[2026-01-11 18:51:36]  *** Error codes and diagnostics ***
[2026-01-11 18:51:36]     "exeErrorCode": 0,
[2026-01-11 18:51:36]     "exeErrorDiag": "",
[2026-01-11 18:51:36]     "pilotErrorCode": 0,
[2026-01-11 18:51:36]     "pilotErrorDiag": "",
[2026-01-11 18:51:36]  *** Listing of results directory ***
[2026-01-11 18:51:36] total 446240
[2026-01-11 18:51:36] -rwx------ 1 boinc boinc     36322 Jan  8 12:07 runpilot2-wrapper.sh
[2026-01-11 18:51:36] -rw-r--r-- 1 boinc boinc      5112 Jan  8 12:09 queuedata.json
[2026-01-11 18:51:36] -rw-r--r-- 1 boinc boinc    579449 Jan  8 12:09 pilot3.tar.gz
[2026-01-11 18:51:36] -rw-r--r-- 1 boinc boinc       100 Jan 11 14:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 18:51:36] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 14:24 run_atlas
[2026-01-11 18:51:36] -rw-r--r-- 1 boinc boinc       105 Jan 11 14:24 job.xml
[2026-01-11 18:51:36] -rw-r--r-- 2 boinc boinc 225617635 Jan 11 14:24 EVNT.47898824._001000.pool.root.1
[2026-01-11 18:51:36] -rw-r--r-- 1 boinc boinc      6639 Jan 11 14:24 init_data.xml
[2026-01-11 18:51:36] -rw-r--r-- 2 boinc boinc     15847 Jan 11 14:24 start_atlas.sh
[2026-01-11 18:51:36] drwxrwx--x 2 boinc boinc      4096 Jan 11 14:24 shared
[2026-01-11 18:51:36] -rw-r--r-- 2 boinc boinc    592402 Jan 11 14:24 input.tar.gz
[2026-01-11 18:51:36] -rw-r--r-- 1 boinc boinc         0 Jan 11 14:24 boinc_lockfile
[2026-01-11 18:51:36] -rw-r--r-- 1 boinc boinc      2518 Jan 11 14:24 pandaJob.out
[2026-01-11 18:51:36] -rw------- 1 boinc boinc    989556 Jan 11 14:24 agis_schedconf.cvmfs.json
[2026-01-11 18:51:36] drwx------ 5 boinc boinc      4096 Jan 11 14:24 pilot3
[2026-01-11 18:51:36] -rw------- 1 boinc boinc 222368952 Jan 11 18:34 HITS.47898826._024478.pool.root.1
[2026-01-11 18:51:36] -rw-r--r-- 1 boinc boinc       528 Jan 11 18:34 boinc_task_state.xml
[2026-01-11 18:51:36] -rw------- 1 boinc boinc        95 Jan 11 18:35 pilot_heartbeat.json
[2026-01-11 18:51:36] -rw------- 1 boinc boinc      1033 Jan 11 18:35 memory_monitor_summary.json
[2026-01-11 18:51:36] -rw------- 1 boinc boinc   1516240 Jan 11 18:35 agis_ddmendpoints.agis.ALL.json
[2026-01-11 18:51:36] -rw------- 1 boinc boinc    405633 Jan 11 18:35 log.47898826._024478.job.log.tgz.1
[2026-01-11 18:51:36] -rw------- 1 boinc boinc      7826 Jan 11 18:35 heartbeat.json
[2026-01-11 18:51:36] -rw------- 1 boinc boinc      4832 Jan 11 18:36 pilotlog.txt
[2026-01-11 18:51:36] -rw------- 1 boinc boinc   2119471 Jan 11 18:36 log.47898826._024478.job.log.1
[2026-01-11 18:51:36] -rw------- 1 boinc boinc       357 Jan 11 18:36 output.list
[2026-01-11 18:51:36] -rw-r--r-- 1 boinc boinc       620 Jan 11 18:36 runtime_log
[2026-01-11 18:51:36] -rw------- 1 boinc boinc   2539520 Jan 11 18:36 result.tar.gz
[2026-01-11 18:51:36] -rw-r--r-- 1 boinc boinc      9206 Jan 11 18:36 runtime_log.err
[2026-01-11 18:51:36] -rw------- 1 boinc boinc       665 Jan 11 18:36 TQPNDmy22x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm74eKDmeiA6gm.diag
[2026-01-11 18:51:36] -rw-r--r-- 1 boinc boinc        27 Jan 11 18:51 wrapper_checkpoint.txt
[2026-01-11 18:51:36] -rw-r--r-- 1 boinc boinc      8192 Jan 11 18:51 boinc_mmap_file
[2026-01-11 18:51:36] -rw-r--r-- 1 boinc boinc     21166 Jan 11 18:51 stderr.txt
[2026-01-11 18:51:36] HITS file was successfully produced:
[2026-01-11 18:51:36] -rw------- 1 boinc boinc 222368952 Jan 11 18:34 shared/HITS.pool.root.1
[2026-01-11 18:51:36]  *** Contents of shared directory: ***
[2026-01-11 18:51:36] total 440576
[2026-01-11 18:51:36] -rw-r--r-- 2 boinc boinc 225617635 Jan 11 14:24 ATLAS.root_0
[2026-01-11 18:51:36] -rw-r--r-- 2 boinc boinc     15847 Jan 11 14:24 start_atlas.sh
[2026-01-11 18:51:36] -rw-r--r-- 2 boinc boinc    592402 Jan 11 14:24 input.tar.gz
[2026-01-11 18:51:36] -rw------- 1 boinc boinc 222368952 Jan 11 18:34 HITS.pool.root.1
[2026-01-11 18:51:36] -rw------- 1 boinc boinc   2539520 Jan 11 18:36 result.tar.gz
18:51:38 (680826): run_atlas exited; CPU time 58917.423414
18:51:38 (680826): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN