Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:03:39 (2125): wrapper (7.7.26015): starting
23:03:39 (2125): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 23:03:39] Arguments: --nthreads 8
[2026-01-08 23:03:39] Threads: 8
[2026-01-08 23:03:39] Checking for CVMFS
[2026-01-08 23:03:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 23:03:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 23:03:39] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 23:03:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 23:03:39] 2.11.2.0 11275 34551 127328 154920 1 181 21640979 25165824 758 130560 0 15060513 99.839 13074102 3193 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 23:03:39] CVMFS is ok
[2026-01-08 23:03:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 23:03:39] Checking for apptainer binary...
[2026-01-08 23:03:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 23:03:39] Running /usr/bin/apptainer --version
[2026-01-08 23:03:39] apptainer version 1.3.2-1.el7
[2026-01-08 23:03:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 23:03:41] cg-vwn441.simple-grid.lan
[2026-01-08 23:03:41] apptainer works
[2026-01-08 23:03:41] Set ATHENA_PROC_NUMBER=8
[2026-01-08 23:03:41] Set ATHENA_CORE_NUMBER=8
[2026-01-08 23:03:41] Starting ATLAS job with PandaID=6962919158
[2026-01-08 23:03:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 05:08:44]  *** The last 200 lines of the pilot log: ***
[2026-01-09 05:08:44] 2026-01-09 04:07:39,553 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 05:08:44] 2026-01-09 04:07:39,622 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 05:08:44] 2026-01-09 04:07:39,623 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 05:08:44] 2026-01-09 04:07:39,626 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6962919158/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 05:08:44] 2026-01-09 04:07:39,626 | INFO     | extracted standard info from prmon json
[2026-01-09 05:08:44] 2026-01-09 04:07:39,626 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 05:08:44] 2026-01-09 04:07:39,627 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 05:08:44] 2026-01-09 04:07:39,627 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 05:08:44] 2026-01-09 04:07:39,627 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 05:08:44] 2026-01-09 04:07:39,635 | INFO     | fitting pss+swap vs Time
[2026-01-09 05:08:44] 2026-01-09 04:07:39,635 | INFO     | sum of square deviations: 13755764892.5
[2026-01-09 05:08:44] 2026-01-09 04:07:39,640 | INFO     | sum of deviations: 181135008173.50006
[2026-01-09 05:08:44] 2026-01-09 04:07:39,640 | INFO     | mean x: 1767920721.5
[2026-01-09 05:08:44] 2026-01-09 04:07:39,640 | INFO     | mean y: 2448206.793785311
[2026-01-09 05:08:44] 2026-01-09 04:07:39,641 | INFO     | intersect: -23277415678.75442
[2026-01-09 05:08:44] 2026-01-09 04:07:39,641 | INFO     | chi2: 7.682241415075938
[2026-01-09 05:08:44] 2026-01-09 04:07:39,642 | INFO     | sum of square deviations: 13181084350.0
[2026-01-09 05:08:44] 2026-01-09 04:07:39,647 | INFO     | sum of deviations: 201672476125.99997
[2026-01-09 05:08:44] 2026-01-09 04:07:39,647 | INFO     | mean x: 1767920569.0
[2026-01-09 05:08:44] 2026-01-09 04:07:39,647 | INFO     | mean y: 2453585.100286533
[2026-01-09 05:08:44] 2026-01-09 04:07:39,647 | INFO     | intersect: -27046984023.90164
[2026-01-09 05:08:44] 2026-01-09 04:07:39,648 | INFO     | chi2: 6.953261785312566
[2026-01-09 05:08:44] 2026-01-09 04:07:39,648 | INFO     | current chi2=6.953261785312566 (change=9.489152844543442 %)
[2026-01-09 05:08:44] 2026-01-09 04:07:39,648 | INFO     | right removable region: 348
[2026-01-09 05:08:44] 2026-01-09 04:07:39,649 | INFO     | sum of square deviations: 13181084350.0
[2026-01-09 05:08:44] 2026-01-09 04:07:39,653 | INFO     | sum of deviations: 57310953324.99997
[2026-01-09 05:08:44] 2026-01-09 04:07:39,654 | INFO     | mean x: 1767920874.0
[2026-01-09 05:08:44] 2026-01-09 04:07:39,654 | INFO     | mean y: 2481050.5845272206
[2026-01-09 05:08:44] 2026-01-09 04:07:39,654 | INFO     | intersect: -7684385067.687992
[2026-01-09 05:08:44] 2026-01-09 04:07:39,654 | INFO     | chi2: 2.9009504778402904
[2026-01-09 05:08:44] 2026-01-09 04:07:39,655 | INFO     | current chi2=2.9009504778402904 (change=62.23822812770048 %)
[2026-01-09 05:08:44] 2026-01-09 04:07:39,655 | INFO     | sum of square deviations: 12622636670.0
[2026-01-09 05:08:44] 2026-01-09 04:07:39,659 | INFO     | sum of deviations: -21196291620.5
[2026-01-09 05:08:44] 2026-01-09 04:07:39,660 | INFO     | mean x: 1767921026.5
[2026-01-09 05:08:44] 2026-01-09 04:07:39,660 | INFO     | mean y: 2502433.2005813955
[2026-01-09 05:08:44] 2026-01-09 04:07:39,660 | INFO     | intersect: 2971245859.743945
[2026-01-09 05:08:44] 2026-01-09 04:07:39,661 | INFO     | chi2: 0.8753807638559914
[2026-01-09 05:08:44] 2026-01-09 04:07:39,661 | INFO     | current chi2=0.8753807638559914 (change=69.82434651874175 %)
[2026-01-09 05:08:44] 2026-01-09 04:07:39,662 | INFO     | sum of square deviations: 12080189290.0
[2026-01-09 05:08:44] 2026-01-09 04:07:39,666 | INFO     | sum of deviations: -35116280347.0
[2026-01-09 05:08:44] 2026-01-09 04:07:39,666 | INFO     | mean x: 1767921179.0
[2026-01-09 05:08:44] 2026-01-09 04:07:39,666 | INFO     | mean y: 2506335.1710914453
[2026-01-09 05:08:44] 2026-01-09 04:07:39,667 | INFO     | intersect: 5141731744.871833
[2026-01-09 05:08:44] 2026-01-09 04:07:39,667 | INFO     | chi2: 0.8020013321393347
[2026-01-09 05:08:44] 2026-01-09 04:07:39,667 | INFO     | current chi2=0.8020013321393347 (change=8.382573018103052 %)
[2026-01-09 05:08:44] 2026-01-09 04:07:39,668 | INFO     | left removable region: 30
[2026-01-09 05:08:44] 2026-01-09 04:07:39,668 | INFO     | sum of square deviations: 9971385099.5
[2026-01-09 05:08:44] 2026-01-09 04:07:39,672 | INFO     | sum of deviations: -9730907331.0
[2026-01-09 05:08:44] 2026-01-09 04:07:39,672 | INFO     | mean x: 1767921453.5
[2026-01-09 05:08:44] 2026-01-09 04:07:39,672 | INFO     | mean y: 2511937.742138365
[2026-01-09 05:08:44] 2026-01-09 04:07:39,672 | INFO     | intersect: 1727796806.4769711
[2026-01-09 05:08:44] 2026-01-09 04:07:39,673 | INFO     | chi2: 0.015252560308185285
[2026-01-09 05:08:44] 2026-01-09 04:07:39,673 | INFO     | current memory leak: -0.98 B/s (using 318 data points, chi2=0.02)
[2026-01-09 05:08:44] 2026-01-09 04:07:39,674 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-09 05:08:44] 2026-01-09 04:07:39,674 | INFO     | ..............................
[2026-01-09 05:08:44] 2026-01-09 04:07:39,674 | INFO     | . Timing measurements:
[2026-01-09 05:08:44] 2026-01-09 04:07:39,674 | INFO     | . get job = 0 s
[2026-01-09 05:08:44] 2026-01-09 04:07:39,674 | INFO     | . initial setup = 2 s
[2026-01-09 05:08:44] 2026-01-09 04:07:39,674 | INFO     | . payload setup = 8 s
[2026-01-09 05:08:44] 2026-01-09 04:07:39,674 | INFO     | . stage-in = 0 s
[2026-01-09 05:08:44] 2026-01-09 04:07:39,674 | INFO     | . payload execution = 21676 s
[2026-01-09 05:08:44] 2026-01-09 04:07:39,677 | INFO     | . stage-out = 4 s
[2026-01-09 05:08:44] 2026-01-09 04:07:39,677 | INFO     | . log creation = 1 s
[2026-01-09 05:08:44] 2026-01-09 04:07:39,677 | INFO     | ..............................
[2026-01-09 05:08:44] 2026-01-09 04:07:40,178 | INFO     | 
[2026-01-09 05:08:44] 2026-01-09 04:07:40,178 | INFO     | job summary report
[2026-01-09 05:08:44] 2026-01-09 04:07:40,178 | INFO     | --------------------------------------------------
[2026-01-09 05:08:44] 2026-01-09 04:07:40,178 | INFO     | PanDA job id: 6962919158
[2026-01-09 05:08:44] 2026-01-09 04:07:40,178 | INFO     | task id: 47898826
[2026-01-09 05:08:44] 2026-01-09 04:07:40,178 | INFO     | errors: (none)
[2026-01-09 05:08:44] 2026-01-09 04:07:40,178 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 05:08:44] 2026-01-09 04:07:40,179 | INFO     | pilot state: finished 
[2026-01-09 05:08:44] 2026-01-09 04:07:40,179 | INFO     | transexitcode: 0
[2026-01-09 05:08:44] 2026-01-09 04:07:40,179 | INFO     | exeerrorcode: 0
[2026-01-09 05:08:44] 2026-01-09 04:07:40,179 | INFO     | exeerrordiag: 
[2026-01-09 05:08:44] 2026-01-09 04:07:40,179 | INFO     | exitcode: 0
[2026-01-09 05:08:44] 2026-01-09 04:07:40,179 | INFO     | exitmsg: OK
[2026-01-09 05:08:44] 2026-01-09 04:07:40,179 | INFO     | cpuconsumptiontime: 79141 s
[2026-01-09 05:08:44] 2026-01-09 04:07:40,179 | INFO     | nevents: 400
[2026-01-09 05:08:44] 2026-01-09 04:07:40,179 | INFO     | neventsw: 0
[2026-01-09 05:08:44] 2026-01-09 04:07:40,179 | INFO     | pid: 12330
[2026-01-09 05:08:44] 2026-01-09 04:07:40,180 | INFO     | pgrp: 12330
[2026-01-09 05:08:44] 2026-01-09 04:07:40,180 | INFO     | corecount: 8
[2026-01-09 05:08:44] 2026-01-09 04:07:40,180 | INFO     | event service: False
[2026-01-09 05:08:44] 2026-01-09 04:07:40,180 | INFO     | sizes: {0: 2283742, 1: 2283997, 7: 2284259, 12: 2284287, 21689: 2317609, 21695: 2326791, 21803: 2326929}
[2026-01-09 05:08:44] 2026-01-09 04:07:40,180 | INFO     | --------------------------------------------------
[2026-01-09 05:08:44] 2026-01-09 04:07:40,180 | INFO     | 
[2026-01-09 05:08:44] 2026-01-09 04:07:40,180 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-01-09 05:08:44] 2026-01-09 04:07:40,489 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,489 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,489 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,489 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,489 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,489 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,489 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,490 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,490 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,490 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,490 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,490 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,490 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,490 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,490 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,490 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,490 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,491 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 05:08:44] 2026-01-09 04:07:40,491 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,491 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 05:08:44] 2026-01-09 04:07:40,491 | INFO     | job 6962919158 has completed (purged errors)
[2026-01-09 05:08:44] 2026-01-09 04:07:40,491 | INFO     | overall cleanup function is called
[2026-01-09 05:08:44] 2026-01-09 04:07:41,500 | INFO     | --- collectZombieJob: --- 10, [12330]
[2026-01-09 05:08:44] 2026-01-09 04:07:41,500 | INFO     | zombie collector waiting for pid 12330
[2026-01-09 05:08:44] 2026-01-09 04:07:41,500 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 05:08:44] 2026-01-09 04:07:41,500 | INFO     | collected zombie processes
[2026-01-09 05:08:44] 2026-01-09 04:07:41,500 | INFO     | will attempt to kill all subprocesses of pid=12330
[2026-01-09 05:08:44] 2026-01-09 04:07:41,597 | INFO     | process IDs to be killed: [12330] (in reverse order)
[2026-01-09 05:08:44] 2026-01-09 04:07:42,446 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 05:08:44] 2026-01-09 04:07:42,447 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 05:08:44] 2026-01-09 04:07:42,449 | INFO     | did not find any defunct processes belonging to 12330
[2026-01-09 05:08:44] 2026-01-09 04:07:42,451 | INFO     | did not find any defunct processes belonging to 12330
[2026-01-09 05:08:44] 2026-01-09 04:07:42,451 | INFO     | ready for new job
[2026-01-09 05:08:44] 2026-01-09 04:07:42,451 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 05:08:44] 2026-01-09 04:07:42,453 | INFO     | ***************************************
[2026-01-09 05:08:44] 2026-01-09 04:07:42,454 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 05:08:44] 2026-01-09 04:07:42,454 | INFO     | ***************************************
[2026-01-09 05:08:44] 2026-01-09 04:07:42,454 | INFO     | 
[2026-01-09 05:08:44] 2026-01-09 04:07:42,455 | INFO     | pilot is running in a VM
[2026-01-09 05:08:44] 2026-01-09 04:07:42,455 | INFO     | architecture information:
[2026-01-09 05:08:44] 2026-01-09 04:07:42,456 | INFO     | executing command: cat /etc/os-release
[2026-01-09 05:08:44] 2026-01-09 04:07:42,568 | INFO     | cat /etc/os-release:
[2026-01-09 05:08:44] NAME="CentOS Linux"
[2026-01-09 05:08:44] VERSION="7 (Core)"
[2026-01-09 05:08:44] ID="centos"
[2026-01-09 05:08:44] ID_LIKE="rhel fedora"
[2026-01-09 05:08:44] VERSION_ID="7"
[2026-01-09 05:08:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 05:08:44] ANSI_COLOR="0;31"
[2026-01-09 05:08:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 05:08:44] HOME_URL="https://www.centos.org/"
[2026-01-09 05:08:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 05:08:44] 
[2026-01-09 05:08:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 05:08:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 05:08:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 05:08:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 05:08:44] 
[2026-01-09 05:08:44] 2026-01-09 04:07:42,568 | INFO     | ***************************************
[2026-01-09 05:08:44] 2026-01-09 04:07:43,075 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-01-09 05:08:44] 2026-01-09 04:07:43,235 | INFO     | sufficient remaining disk space (495637757952 B)
[2026-01-09 05:08:44] 2026-01-09 04:07:43,236 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 05:08:44] 2026-01-09 04:07:43,236 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 05:08:44] 2026-01-09 04:07:43,236 | INFO     | update_server=False
[2026-01-09 05:08:44] 2026-01-09 04:07:43,236 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 05:08:44] 2026-01-09 04:07:43,236 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 05:08:44] 2026-01-09 04:07:43,240 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:08:44] 2026-01-09 04:07:43,240 | INFO     | aborting loop
[2026-01-09 05:08:44] 2026-01-09 04:07:43,753 | INFO     | all job control threads have been joined
[2026-01-09 05:08:44] 2026-01-09 04:07:44,061 | INFO     | all payload control threads have been joined
[2026-01-09 05:08:44] 2026-01-09 04:07:44,245 | INFO     | [job] retrieve thread has finished
[2026-01-09 05:08:44] 2026-01-09 04:07:44,246 | INFO     | [job] job monitor thread has finished
[2026-01-09 05:08:44] 2026-01-09 04:07:44,255 | INFO     | all data control threads have been joined
[2026-01-09 05:08:44] 2026-01-09 04:07:44,427 | INFO     | [payload] validate_post thread has finished
[2026-01-09 05:08:44] 2026-01-09 04:07:44,759 | INFO     | [job] control thread has finished
[2026-01-09 05:08:44] 2026-01-09 04:07:44,820 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:08:44] 2026-01-09 04:07:45,067 | INFO     | [payload] control thread has finished
[2026-01-09 05:08:44] 2026-01-09 04:07:45,079 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 05:08:44] 2026-01-09 04:07:45,244 | INFO     | [data] copytool_out thread has finished
[2026-01-09 05:08:44] 2026-01-09 04:07:45,261 | INFO     | [data] control thread has finished
[2026-01-09 05:08:44] 2026-01-09 04:07:45,353 | INFO     | [data] copytool_in thread has finished
[2026-01-09 05:08:44] 2026-01-09 04:07:45,379 | INFO     | [job] validate thread has finished
[2026-01-09 05:08:44] 2026-01-09 04:07:45,481 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 05:08:44] 2026-01-09 04:07:45,732 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 05:08:44] 2026-01-09 04:07:45,744 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 05:08:44] 2026-01-09 04:07:45,768 | INFO     | [payload] failed_post thread has finished
[2026-01-09 05:08:44] 2026-01-09 04:07:45,826 | INFO     | [job] queue monitor thread has finished
[2026-01-09 05:08:44] 2026-01-09 04:07:46,374 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 05:08:44] 2026-01-09 04:07:50,383 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 05:08:44] 2026-01-09 04:08:12,635 | INFO     | PID=5845 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 05:08:44] 2026-01-09 04:08:12,635 | INFO     | .. there are 2 such processes running
[2026-01-09 05:08:44] 2026-01-09 04:08:12,636 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 05:08:44] 2026-01-09 04:08:12,636 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 05:08:44] 2026-01-09 04:08:12,637 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 05:08:44] 2026-01-09 04:08:36,153 | INFO     | [monitor] cgroup control has ended
[2026-01-09 05:08:44] 2026-01-09 04:08:36,800 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140675569387328)>', '<ExcThread(monitor, started 140674959644416)>']
[2026-01-09 05:08:44] 2026-01-09 04:08:37,785 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 05:08:44] 2026-01-09 04:08:37,785 | INFO     | [monitor] control thread has ended
[2026-01-09 05:08:44] 2026-01-09 04:08:41,826 | INFO     | all workflow threads have been joined
[2026-01-09 05:08:44] 2026-01-09 04:08:41,826 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 05:08:44] 2026-01-09 04:08:41,826 | INFO     | traces error code: 0
[2026-01-09 05:08:44] 2026-01-09 04:08:41,827 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 05:08:44] 2026-01-09 04:08:42,236 [wrapper] ==== pilot stdout END ====
[2026-01-09 05:08:44] 2026-01-09 04:08:42,324 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 05:08:44] 2026-01-09 04:08:42,413 [wrapper] pilotpid: 5845
[2026-01-09 05:08:44] 2026-01-09 04:08:42,473 [wrapper] Pilot exit status: 0
[2026-01-09 05:08:44] 2026-01-09 04:08:42,893 [wrapper] pandaids: 6962919158
[2026-01-09 05:08:44] 2026-01-09 04:08:43,191 [wrapper] cleanup supervisor_pilot 13882 5846
[2026-01-09 05:08:44] 2026-01-09 04:08:43,206 [wrapper] Test setup, not cleaning
[2026-01-09 05:08:44] 2026-01-09 04:08:43,209 [wrapper] apfmon messages muted
[2026-01-09 05:08:44] 2026-01-09 04:08:43,212 [wrapper] ==== wrapper stdout END ====
[2026-01-09 05:08:44] 2026-01-09 04:08:43,309 [wrapper] ==== wrapper stderr END ====
[2026-01-09 05:08:44]  *** Error codes and diagnostics ***
[2026-01-09 05:08:44]     "exeErrorCode": 0,
[2026-01-09 05:08:44]     "exeErrorDiag": "",
[2026-01-09 05:08:44]     "pilotErrorCode": 0,
[2026-01-09 05:08:44]     "pilotErrorDiag": "",
[2026-01-09 05:08:44]  *** Listing of results directory ***
[2026-01-09 05:08:44] total 444648
[2026-01-09 05:08:44] -rwx------. 1 boinc boinc     36322 Jan  8 09:07 runpilot2-wrapper.sh
[2026-01-09 05:08:44] -rw-r--r--. 1 boinc boinc      5112 Jan  8 09:11 queuedata.json
[2026-01-09 05:08:44] -rw-r--r--. 1 boinc boinc    579449 Jan  8 09:11 pilot3.tar.gz
[2026-01-09 05:08:44] -rw-r--r--. 1 boinc boinc       100 Jan  8 23:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 05:08:44] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 23:03 run_atlas
[2026-01-09 05:08:44] -rw-r--r--. 1 boinc boinc       105 Jan  8 23:03 job.xml
[2026-01-09 05:08:44] -rw-r--r--. 1 boinc boinc      6390 Jan  8 23:03 init_data.xml
[2026-01-09 05:08:44] -rw-r--r--. 2 boinc boinc 224704529 Jan  8 23:03 EVNT.47898824._000841.pool.root.1
[2026-01-09 05:08:44] -rw-r--r--. 2 boinc boinc     15847 Jan  8 23:03 start_atlas.sh
[2026-01-09 05:08:44] drwxrwx--x. 2 boinc boinc        68 Jan  8 23:03 shared
[2026-01-09 05:08:44] -rw-r--r--. 2 boinc boinc    592403 Jan  8 23:03 input.tar.gz
[2026-01-09 05:08:44] -rw-r--r--. 1 boinc boinc         0 Jan  8 23:03 boinc_lockfile
[2026-01-09 05:08:44] -rw-r--r--. 1 boinc boinc      2519 Jan  8 23:03 pandaJob.out
[2026-01-09 05:08:44] -rw-------. 1 boinc boinc    989845 Jan  8 23:03 agis_schedconf.cvmfs.json
[2026-01-09 05:08:44] drwx------. 5 boinc boinc      4096 Jan  8 23:03 pilot3
[2026-01-09 05:08:44] -rw-------. 1 boinc boinc 219768253 Jan  9 05:04 HITS.47898826._021083.pool.root.1
[2026-01-09 05:08:44] -rw-r--r--. 1 boinc boinc       531 Jan  9 05:04 boinc_task_state.xml
[2026-01-09 05:08:44] -rw-------. 1 boinc boinc      1028 Jan  9 05:05 memory_monitor_summary.json
[2026-01-09 05:08:44] -rw-------. 1 boinc boinc   1516240 Jan  9 05:05 agis_ddmendpoints.agis.ALL.json
[2026-01-09 05:08:44] -rw-------. 1 boinc boinc    549267 Jan  9 05:05 log.47898826._021083.job.log.tgz.1
[2026-01-09 05:08:44] -rw-------. 1 boinc boinc      7776 Jan  9 05:07 heartbeat.json
[2026-01-09 05:08:44] -rw-------. 1 boinc boinc        95 Jan  9 05:08 pilot_heartbeat.json
[2026-01-09 05:08:44] -rw-r--r--. 1 boinc boinc      8192 Jan  9 05:08 boinc_mmap_file
[2026-01-09 05:08:44] -rw-r--r--. 1 boinc boinc        28 Jan  9 05:08 wrapper_checkpoint.txt
[2026-01-09 05:08:44] -rw-------. 1 boinc boinc      4883 Jan  9 05:08 pilotlog.txt
[2026-01-09 05:08:44] -rw-------. 1 boinc boinc   2921400 Jan  9 05:08 log.47898826._021083.job.log.1
[2026-01-09 05:08:44] -rw-------. 1 boinc boinc       357 Jan  9 05:08 output.list
[2026-01-09 05:08:44] -rw-r--r--. 1 boinc boinc       620 Jan  9 05:08 runtime_log
[2026-01-09 05:08:44] -rw-------. 1 boinc boinc   3491840 Jan  9 05:08 result.tar.gz
[2026-01-09 05:08:44] -rw-r--r--. 1 boinc boinc      8817 Jan  9 05:08 runtime_log.err
[2026-01-09 05:08:44] -rw-------. 1 boinc boinc       657 Jan  9 05:08 GzMNDm8D0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYheKDm3mxs2m.diag
[2026-01-09 05:08:44] -rw-r--r--. 1 boinc boinc     20727 Jan  9 05:08 stderr.txt
[2026-01-09 05:08:44] HITS file was successfully produced:
[2026-01-09 05:08:44] -rw-------. 1 boinc boinc 219768253 Jan  9 05:04 shared/HITS.pool.root.1
[2026-01-09 05:08:44]  *** Contents of shared directory: ***
[2026-01-09 05:08:44] total 438068
[2026-01-09 05:08:44] -rw-r--r--. 2 boinc boinc 224704529 Jan  8 23:03 ATLAS.root_0
[2026-01-09 05:08:44] -rw-r--r--. 2 boinc boinc     15847 Jan  8 23:03 start_atlas.sh
[2026-01-09 05:08:44] -rw-r--r--. 2 boinc boinc    592403 Jan  8 23:03 input.tar.gz
[2026-01-09 05:08:44] -rw-------. 1 boinc boinc 219768253 Jan  9 05:04 HITS.pool.root.1
[2026-01-09 05:08:44] -rw-------. 1 boinc boinc   3491840 Jan  9 05:08 result.tar.gz
05:08:45 (2125): run_atlas exited; CPU time 79370.734820
05:08:45 (2125): called boinc_finish(0)

</stderr_txt>
]]>

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