Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:52:51 (5852): wrapper (7.7.26015): starting
23:52:51 (5852): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 23:52:51] Arguments: --nthreads 8
[2026-01-08 23:52:51] Threads: 8
[2026-01-08 23:52:51] Checking for CVMFS
[2026-01-08 23:52:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 23:52:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 23:52:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 23:52:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 23:52:54] 2.11.2.0 10929 34582 95500 154922 0 60 19832877 25165824 96 130560 0 16425909 99.828 9438500 3094 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 23:52:54] CVMFS is ok
[2026-01-08 23:52:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 23:52:54] Checking for apptainer binary...
[2026-01-08 23:52:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 23:52:54] Running /usr/bin/apptainer --version
[2026-01-08 23:52:54] apptainer version 1.3.2-1.el7
[2026-01-08 23:52:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 23:53:18] cg-vwn424.simple-grid.lan
[2026-01-08 23:53:18] apptainer works
[2026-01-08 23:53:18] Set ATHENA_PROC_NUMBER=8
[2026-01-08 23:53:18] Set ATHENA_CORE_NUMBER=8
[2026-01-08 23:53:19] Starting ATLAS job with PandaID=6963074710
[2026-01-08 23:53:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 05:48:32]  *** The last 200 lines of the pilot log: ***
[2026-01-09 05:48:32] 2026-01-09 04:47:53,562 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 05:48:32] 2026-01-09 04:47:53,562 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 05:48:32] 2026-01-09 04:47:53,569 | INFO     | fitting pss+swap vs Time
[2026-01-09 05:48:32] 2026-01-09 04:47:53,570 | INFO     | sum of square deviations: 11657595320.0
[2026-01-09 05:48:32] 2026-01-09 04:47:53,574 | INFO     | sum of deviations: 204616212174.00006
[2026-01-09 05:48:32] 2026-01-09 04:47:53,574 | INFO     | mean x: 1767923816.0
[2026-01-09 05:48:32] 2026-01-09 04:47:53,574 | INFO     | mean y: 2445472.1074626865
[2026-01-09 05:48:32] 2026-01-09 04:47:53,575 | INFO     | intersect: -31028471686.382805
[2026-01-09 05:48:32] 2026-01-09 04:47:53,575 | INFO     | chi2: 7.1036209358536295
[2026-01-09 05:48:32] 2026-01-09 04:47:53,576 | INFO     | sum of square deviations: 11143362422.5
[2026-01-09 05:48:32] 2026-01-09 04:47:53,579 | INFO     | sum of deviations: 201309504776.00003
[2026-01-09 05:48:32] 2026-01-09 04:47:53,579 | INFO     | mean x: 1767923663.5
[2026-01-09 05:48:32] 2026-01-09 04:47:53,579 | INFO     | mean y: 2444491.4060606062
[2026-01-09 05:48:32] 2026-01-09 04:47:53,580 | INFO     | intersect: -31935836225.583405
[2026-01-09 05:48:32] 2026-01-09 04:47:53,580 | INFO     | chi2: 7.109726710424442
[2026-01-09 05:48:32] 2026-01-09 04:47:53,580 | INFO     | current chi2=7.109726710424442 (change=-0.08595298969283906 %)
[2026-01-09 05:48:32] 2026-01-09 04:47:53,580 | INFO     | right removable region: 329
[2026-01-09 05:48:32] 2026-01-09 04:47:53,581 | INFO     | sum of square deviations: 11143362422.5
[2026-01-09 05:48:32] 2026-01-09 04:47:53,584 | INFO     | sum of deviations: 91433220006.0
[2026-01-09 05:48:32] 2026-01-09 04:47:53,585 | INFO     | mean x: 1767923968.5
[2026-01-09 05:48:32] 2026-01-09 04:47:53,585 | INFO     | mean y: 2479016.4363636365
[2026-01-09 05:48:32] 2026-01-09 04:47:53,585 | INFO     | intersect: -14503643555.629799
[2026-01-09 05:48:32] 2026-01-09 04:47:53,585 | INFO     | chi2: 2.5564567294236857
[2026-01-09 05:48:32] 2026-01-09 04:47:53,586 | INFO     | current chi2=2.5564567294236857 (change=64.01192078647308 %)
[2026-01-09 05:48:32] 2026-01-09 04:47:53,586 | INFO     | sum of square deviations: 10644478650.0
[2026-01-09 05:48:32] 2026-01-09 04:47:53,590 | INFO     | sum of deviations: 9005521865.999998
[2026-01-09 05:48:32] 2026-01-09 04:47:53,590 | INFO     | mean x: 1767924121.0
[2026-01-09 05:48:32] 2026-01-09 04:47:53,590 | INFO     | mean y: 2504178.9876923077
[2026-01-09 05:48:32] 2026-01-09 04:47:53,590 | INFO     | intersect: -1493208279.329308
[2026-01-09 05:48:32] 2026-01-09 04:47:53,591 | INFO     | chi2: 0.23990079045675164
[2026-01-09 05:48:32] 2026-01-09 04:47:53,591 | INFO     | current chi2=0.23990079045675164 (change=90.61588691505709 %)
[2026-01-09 05:48:32] 2026-01-09 04:47:53,591 | INFO     | sum of square deviations: 10160711440.0
[2026-01-09 05:48:32] 2026-01-09 04:47:53,595 | INFO     | sum of deviations: -13328280064.500002
[2026-01-09 05:48:32] 2026-01-09 04:47:53,595 | INFO     | mean x: 1767924273.5
[2026-01-09 05:48:32] 2026-01-09 04:47:53,595 | INFO     | mean y: 2511185.815625
[2026-01-09 05:48:32] 2026-01-09 04:47:53,595 | INFO     | intersect: 2321580080.664163
[2026-01-09 05:48:32] 2026-01-09 04:47:53,596 | INFO     | chi2: 0.022376033601013295
[2026-01-09 05:48:32] 2026-01-09 04:47:53,596 | INFO     | current chi2=0.022376033601013295 (change=90.67279705147652 %)
[2026-01-09 05:48:32] 2026-01-09 04:47:53,596 | INFO     | sum of square deviations: 9691828230.0
[2026-01-09 05:48:32] 2026-01-09 04:47:53,600 | INFO     | sum of deviations: -14604964466.999998
[2026-01-09 05:48:32] 2026-01-09 04:47:53,600 | INFO     | mean x: 1767924426.0
[2026-01-09 05:48:32] 2026-01-09 04:47:53,600 | INFO     | mean y: 2511599.438095238
[2026-01-09 05:48:32] 2026-01-09 04:47:53,600 | INFO     | intersect: 2666660489.546042
[2026-01-09 05:48:32] 2026-01-09 04:47:53,601 | INFO     | chi2: 0.020993457031720984
[2026-01-09 05:48:32] 2026-01-09 04:47:53,601 | INFO     | current chi2=0.020993457031720984 (change=6.178827731245905 %)
[2026-01-09 05:48:32] 2026-01-09 04:47:53,601 | INFO     | left removable region: 40
[2026-01-09 05:48:32] 2026-01-09 04:47:53,602 | INFO     | sum of square deviations: 7484568240.0
[2026-01-09 05:48:32] 2026-01-09 04:47:53,604 | INFO     | sum of deviations: -10248922075.999992
[2026-01-09 05:48:32] 2026-01-09 04:47:53,605 | INFO     | mean x: 1767924853.0
[2026-01-09 05:48:32] 2026-01-09 04:47:53,605 | INFO     | mean y: 2510014.757785467
[2026-01-09 05:48:32] 2026-01-09 04:47:53,605 | INFO     | intersect: 2423401036.6052585
[2026-01-09 05:48:32] 2026-01-09 04:47:53,605 | INFO     | chi2: 0.01955341297260825
[2026-01-09 05:48:32] 2026-01-09 04:47:53,606 | INFO     | current memory leak: -1.37 B/s (using 289 data points, chi2=0.02)
[2026-01-09 05:48:32] 2026-01-09 04:47:53,606 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-09 05:48:32] 2026-01-09 04:47:53,607 | INFO     | ..............................
[2026-01-09 05:48:32] 2026-01-09 04:47:53,607 | INFO     | . Timing measurements:
[2026-01-09 05:48:32] 2026-01-09 04:47:53,607 | INFO     | . get job = 0 s
[2026-01-09 05:48:32] 2026-01-09 04:47:53,607 | INFO     | . initial setup = 11 s
[2026-01-09 05:48:32] 2026-01-09 04:47:53,607 | INFO     | . payload setup = 148 s
[2026-01-09 05:48:32] 2026-01-09 04:47:53,607 | INFO     | . stage-in = 0 s
[2026-01-09 05:48:32] 2026-01-09 04:47:53,607 | INFO     | . payload execution = 20605 s
[2026-01-09 05:48:32] 2026-01-09 04:47:53,607 | INFO     | . stage-out = 1 s
[2026-01-09 05:48:32] 2026-01-09 04:47:53,608 | INFO     | . log creation = 0 s
[2026-01-09 05:48:32] 2026-01-09 04:47:53,608 | INFO     | ..............................
[2026-01-09 05:48:32] 2026-01-09 04:47:53,874 | INFO     | 
[2026-01-09 05:48:32] 2026-01-09 04:47:53,875 | INFO     | job summary report
[2026-01-09 05:48:32] 2026-01-09 04:47:53,875 | INFO     | --------------------------------------------------
[2026-01-09 05:48:32] 2026-01-09 04:47:53,875 | INFO     | PanDA job id: 6963074710
[2026-01-09 05:48:32] 2026-01-09 04:47:53,875 | INFO     | task id: 47898826
[2026-01-09 05:48:32] 2026-01-09 04:47:53,875 | INFO     | errors: (none)
[2026-01-09 05:48:32] 2026-01-09 04:47:53,875 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 05:48:32] 2026-01-09 04:47:53,875 | INFO     | pilot state: finished 
[2026-01-09 05:48:32] 2026-01-09 04:47:53,875 | INFO     | transexitcode: 0
[2026-01-09 05:48:32] 2026-01-09 04:47:53,876 | INFO     | exeerrorcode: 0
[2026-01-09 05:48:32] 2026-01-09 04:47:53,876 | INFO     | exeerrordiag: 
[2026-01-09 05:48:32] 2026-01-09 04:47:53,876 | INFO     | exitcode: 0
[2026-01-09 05:48:32] 2026-01-09 04:47:53,876 | INFO     | exitmsg: OK
[2026-01-09 05:48:32] 2026-01-09 04:47:53,876 | INFO     | cpuconsumptiontime: 78590 s
[2026-01-09 05:48:32] 2026-01-09 04:47:53,876 | INFO     | nevents: 400
[2026-01-09 05:48:32] 2026-01-09 04:47:53,876 | INFO     | neventsw: 0
[2026-01-09 05:48:32] 2026-01-09 04:47:53,876 | INFO     | pid: 16131
[2026-01-09 05:48:32] 2026-01-09 04:47:53,876 | INFO     | pgrp: 16131
[2026-01-09 05:48:32] 2026-01-09 04:47:53,877 | INFO     | corecount: 8
[2026-01-09 05:48:32] 2026-01-09 04:47:53,877 | INFO     | event service: False
[2026-01-09 05:48:32] 2026-01-09 04:47:53,877 | INFO     | sizes: {0: 2283135, 1: 2283820, 2: 2284019, 12: 2284019, 23: 2284047, 34: 2284075, 45: 2284231, 55: 2284259, 66: 2284287, 77: 2284315, 88: 2284371, 98: 2284679, 10
[2026-01-09 05:48:32] 2026-01-09 04:47:53,877 | INFO     | --------------------------------------------------
[2026-01-09 05:48:32] 2026-01-09 04:47:53,877 | INFO     | 
[2026-01-09 05:48:32] 2026-01-09 04:47:53,877 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-01-09 05:48:32] 2026-01-09 04:47:53,908 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,909 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,909 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,909 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,909 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,909 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,909 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,909 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,909 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,910 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,910 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,910 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,910 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,910 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,910 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,910 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,910 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,910 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 05:48:32] 2026-01-09 04:47:53,911 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,911 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 05:48:32] 2026-01-09 04:47:53,911 | INFO     | job 6963074710 has completed (purged errors)
[2026-01-09 05:48:32] 2026-01-09 04:47:53,911 | INFO     | overall cleanup function is called
[2026-01-09 05:48:32] 2026-01-09 04:47:54,917 | INFO     | --- collectZombieJob: --- 10, [16131]
[2026-01-09 05:48:32] 2026-01-09 04:47:54,918 | INFO     | zombie collector waiting for pid 16131
[2026-01-09 05:48:32] 2026-01-09 04:47:54,918 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 05:48:32] 2026-01-09 04:47:54,918 | INFO     | collected zombie processes
[2026-01-09 05:48:32] 2026-01-09 04:47:54,918 | INFO     | will attempt to kill all subprocesses of pid=16131
[2026-01-09 05:48:32] 2026-01-09 04:47:54,984 | INFO     | process IDs to be killed: [16131] (in reverse order)
[2026-01-09 05:48:32] 2026-01-09 04:47:55,033 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 05:48:32] 2026-01-09 04:47:55,034 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 05:48:32] 2026-01-09 04:47:55,036 | INFO     | did not find any defunct processes belonging to 16131
[2026-01-09 05:48:32] 2026-01-09 04:47:55,037 | INFO     | did not find any defunct processes belonging to 16131
[2026-01-09 05:48:32] 2026-01-09 04:47:55,037 | INFO     | ready for new job
[2026-01-09 05:48:32] 2026-01-09 04:47:55,038 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 05:48:32] 2026-01-09 04:47:55,040 | INFO     | ***************************************
[2026-01-09 05:48:32] 2026-01-09 04:47:55,040 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 05:48:32] 2026-01-09 04:47:55,040 | INFO     | ***************************************
[2026-01-09 05:48:32] 2026-01-09 04:47:55,040 | INFO     | 
[2026-01-09 05:48:32] 2026-01-09 04:47:55,041 | INFO     | pilot is running in a VM
[2026-01-09 05:48:32] 2026-01-09 04:47:55,041 | INFO     | architecture information:
[2026-01-09 05:48:32] 2026-01-09 04:47:55,041 | INFO     | executing command: cat /etc/os-release
[2026-01-09 05:48:32] 2026-01-09 04:47:55,060 | INFO     | cat /etc/os-release:
[2026-01-09 05:48:32] NAME="CentOS Linux"
[2026-01-09 05:48:32] VERSION="7 (Core)"
[2026-01-09 05:48:32] ID="centos"
[2026-01-09 05:48:32] ID_LIKE="rhel fedora"
[2026-01-09 05:48:32] VERSION_ID="7"
[2026-01-09 05:48:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 05:48:32] ANSI_COLOR="0;31"
[2026-01-09 05:48:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 05:48:32] HOME_URL="https://www.centos.org/"
[2026-01-09 05:48:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 05:48:32] 
[2026-01-09 05:48:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 05:48:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 05:48:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 05:48:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 05:48:32] 
[2026-01-09 05:48:32] 2026-01-09 04:47:55,060 | INFO     | ***************************************
[2026-01-09 05:48:32] 2026-01-09 04:47:55,563 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-01-09 05:48:32] 2026-01-09 04:47:55,584 | INFO     | sufficient remaining disk space (497905827840 B)
[2026-01-09 05:48:32] 2026-01-09 04:47:55,584 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 05:48:32] 2026-01-09 04:47:55,584 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 05:48:32] 2026-01-09 04:47:55,584 | INFO     | update_server=False
[2026-01-09 05:48:32] 2026-01-09 04:47:55,585 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 05:48:32] 2026-01-09 04:47:55,585 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 05:48:32] 2026-01-09 04:47:55,586 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:48:32] 2026-01-09 04:47:55,586 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 05:48:32] 2026-01-09 04:47:55,586 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:48:32] 2026-01-09 04:47:55,587 | INFO     | aborting loop
[2026-01-09 05:48:32] 2026-01-09 04:47:56,096 | INFO     | all payload control threads have been joined
[2026-01-09 05:48:32] 2026-01-09 04:47:56,398 | INFO     | all job control threads have been joined
[2026-01-09 05:48:32] 2026-01-09 04:47:56,590 | INFO     | [job] retrieve thread has finished
[2026-01-09 05:48:32] 2026-01-09 04:47:56,591 | INFO     | [job] queue monitor thread has finished
[2026-01-09 05:48:32] 2026-01-09 04:47:56,593 | INFO     | [job] job monitor thread has finished
[2026-01-09 05:48:32] 2026-01-09 04:47:56,629 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 05:48:32] 2026-01-09 04:47:56,681 | INFO     | all data control threads have been joined
[2026-01-09 05:48:32] 2026-01-09 04:47:57,102 | INFO     | [payload] control thread has finished
[2026-01-09 05:48:32] 2026-01-09 04:47:57,404 | INFO     | [job] control thread has finished
[2026-01-09 05:48:32] 2026-01-09 04:47:57,593 | INFO     | [data] copytool_out thread has finished
[2026-01-09 05:48:32] 2026-01-09 04:47:57,617 | INFO     | [payload] validate_post thread has finished
[2026-01-09 05:48:32] 2026-01-09 04:47:57,683 | INFO     | [data] copytool_in thread has finished
[2026-01-09 05:48:32] 2026-01-09 04:47:57,687 | INFO     | [data] control thread has finished
[2026-01-09 05:48:32] 2026-01-09 04:47:57,788 | INFO     | [payload] failed_post thread has finished
[2026-01-09 05:48:32] 2026-01-09 04:47:57,827 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 05:48:32] 2026-01-09 04:47:57,977 | INFO     | [job] validate thread has finished
[2026-01-09 05:48:32] 2026-01-09 04:47:57,998 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 05:48:32] 2026-01-09 04:47:59,593 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 05:48:32] 2026-01-09 04:48:06,442 | INFO     | job.realtimelogging is not enabled
[2026-01-09 05:48:32] 2026-01-09 04:48:07,448 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 05:48:32] 2026-01-09 04:48:25,576 | INFO     | PID=9582 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 05:48:32] 2026-01-09 04:48:25,577 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 05:48:32] 2026-01-09 04:48:25,577 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 05:48:32] 2026-01-09 04:48:25,577 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 05:48:32] 2026-01-09 04:48:26,601 | INFO     | [monitor] cgroup control has ended
[2026-01-09 05:48:32] 2026-01-09 04:48:27,449 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139902802908992)>', '<ExcThread(monitor, started 139902243038976)>']
[2026-01-09 05:48:32] 2026-01-09 04:48:27,587 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 05:48:32] 2026-01-09 04:48:27,588 | INFO     | [monitor] control thread has ended
[2026-01-09 05:48:32] 2026-01-09 04:48:32,474 | INFO     | all workflow threads have been joined
[2026-01-09 05:48:32] 2026-01-09 04:48:32,475 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 05:48:32] 2026-01-09 04:48:32,475 | INFO     | traces error code: 0
[2026-01-09 05:48:32] 2026-01-09 04:48:32,475 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 05:48:32] 2026-01-09 04:48:32,615 [wrapper] ==== pilot stdout END ====
[2026-01-09 05:48:32] 2026-01-09 04:48:32,619 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 05:48:32] 2026-01-09 04:48:32,624 [wrapper] pilotpid: 9582
[2026-01-09 05:48:32] 2026-01-09 04:48:32,629 [wrapper] Pilot exit status: 0
[2026-01-09 05:48:32] 2026-01-09 04:48:32,646 [wrapper] pandaids: 6963074710
[2026-01-09 05:48:32] 2026-01-09 04:48:32,681 [wrapper] cleanup supervisor_pilot 15374 9583
[2026-01-09 05:48:32] 2026-01-09 04:48:32,686 [wrapper] Test setup, not cleaning
[2026-01-09 05:48:32] 2026-01-09 04:48:32,690 [wrapper] apfmon messages muted
[2026-01-09 05:48:32] 2026-01-09 04:48:32,694 [wrapper] ==== wrapper stdout END ====
[2026-01-09 05:48:32] 2026-01-09 04:48:32,698 [wrapper] ==== wrapper stderr END ====
[2026-01-09 05:48:32]  *** Error codes and diagnostics ***
[2026-01-09 05:48:32]     "exeErrorCode": 0,
[2026-01-09 05:48:32]     "exeErrorDiag": "",
[2026-01-09 05:48:32]     "pilotErrorCode": 0,
[2026-01-09 05:48:32]     "pilotErrorDiag": "",
[2026-01-09 05:48:32]  *** Listing of results directory ***
[2026-01-09 05:48:32] total 443152
[2026-01-09 05:48:32] -rw-r--r--. 1 boinc boinc    579449 Jan  8 12:06 pilot3.tar.gz
[2026-01-09 05:48:32] -rwx------. 1 boinc boinc     36322 Jan  8 12:06 runpilot2-wrapper.sh
[2026-01-09 05:48:32] -rw-r--r--. 1 boinc boinc      5112 Jan  8 12:07 queuedata.json
[2026-01-09 05:48:32] -rw-r--r--. 1 boinc boinc       100 Jan  8 23:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 05:48:32] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 23:52 run_atlas
[2026-01-09 05:48:32] -rw-r--r--. 1 boinc boinc       105 Jan  8 23:52 job.xml
[2026-01-09 05:48:32] -rw-r--r--. 1 boinc boinc      6389 Jan  8 23:52 init_data.xml
[2026-01-09 05:48:32] -rw-r--r--. 2 boinc boinc 226026214 Jan  8 23:52 EVNT.47898824._000920.pool.root.1
[2026-01-09 05:48:32] -rw-r--r--. 2 boinc boinc     15847 Jan  8 23:52 start_atlas.sh
[2026-01-09 05:48:32] drwxrwx--x. 2 boinc boinc        68 Jan  8 23:52 shared
[2026-01-09 05:48:32] -rw-r--r--. 2 boinc boinc    592394 Jan  8 23:52 input.tar.gz
[2026-01-09 05:48:32] -rw-r--r--. 1 boinc boinc         0 Jan  8 23:52 boinc_lockfile
[2026-01-09 05:48:32] -rw-r--r--. 1 boinc boinc      2516 Jan  8 23:53 pandaJob.out
[2026-01-09 05:48:32] -rw-------. 1 boinc boinc    989837 Jan  8 23:57 agis_schedconf.cvmfs.json
[2026-01-09 05:48:32] drwx------. 5 boinc boinc      4096 Jan  8 23:57 pilot3
[2026-01-09 05:48:32] -rw-r--r--. 1 boinc boinc       531 Jan  9 05:46 boinc_task_state.xml
[2026-01-09 05:48:32] -rw-------. 1 boinc boinc 217228463 Jan  9 05:46 HITS.47898826._023076.pool.root.1
[2026-01-09 05:48:32] -rw-------. 1 boinc boinc      1018 Jan  9 05:47 memory_monitor_summary.json
[2026-01-09 05:48:32] -rw-------. 1 boinc boinc   1516240 Jan  9 05:47 agis_ddmendpoints.agis.ALL.json
[2026-01-09 05:48:32] -rw-------. 1 boinc boinc    529907 Jan  9 05:47 log.47898826._023076.job.log.tgz.1
[2026-01-09 05:48:32] -rw-------. 1 boinc boinc      7777 Jan  9 05:47 heartbeat.json
[2026-01-09 05:48:32] -rw-r--r--. 1 boinc boinc      8192 Jan  9 05:48 boinc_mmap_file
[2026-01-09 05:48:32] -rw-r--r--. 1 boinc boinc        28 Jan  9 05:48 wrapper_checkpoint.txt
[2026-01-09 05:48:32] -rw-------. 1 boinc boinc        95 Jan  9 05:48 pilot_heartbeat.json
[2026-01-09 05:48:32] -rw-------. 1 boinc boinc      4880 Jan  9 05:48 pilotlog.txt
[2026-01-09 05:48:32] -rw-------. 1 boinc boinc   2785264 Jan  9 05:48 log.47898826._023076.job.log.1
[2026-01-09 05:48:32] -rw-------. 1 boinc boinc       357 Jan  9 05:48 output.list
[2026-01-09 05:48:32] -rw-r--r--. 1 boinc boinc       620 Jan  9 05:48 runtime_log
[2026-01-09 05:48:32] -rw-------. 1 boinc boinc   3338240 Jan  9 05:48 result.tar.gz
[2026-01-09 05:48:32] -rw-r--r--. 1 boinc boinc      8817 Jan  9 05:48 runtime_log.err
[2026-01-09 05:48:32] -rw-------. 1 boinc boinc       657 Jan  9 05:48 aaFMDm112x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPxeKDmbp3ORo.diag
[2026-01-09 05:48:32] -rw-r--r--. 1 boinc boinc     20634 Jan  9 05:48 stderr.txt
[2026-01-09 05:48:32] HITS file was successfully produced:
[2026-01-09 05:48:32] -rw-------. 1 boinc boinc 217228463 Jan  9 05:46 shared/HITS.pool.root.1
[2026-01-09 05:48:32]  *** Contents of shared directory: ***
[2026-01-09 05:48:32] total 436728
[2026-01-09 05:48:32] -rw-r--r--. 2 boinc boinc 226026214 Jan  8 23:52 ATLAS.root_0
[2026-01-09 05:48:32] -rw-r--r--. 2 boinc boinc     15847 Jan  8 23:52 start_atlas.sh
[2026-01-09 05:48:32] -rw-r--r--. 2 boinc boinc    592394 Jan  8 23:52 input.tar.gz
[2026-01-09 05:48:32] -rw-------. 1 boinc boinc 217228463 Jan  9 05:46 HITS.pool.root.1
[2026-01-09 05:48:32] -rw-------. 1 boinc boinc   3338240 Jan  9 05:48 result.tar.gz
05:48:34 (5852): run_atlas exited; CPU time 78799.731045
05:48:34 (5852): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN