Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:01:30 (68622): wrapper (7.7.26015): starting
08:01:30 (68622): wrapper: running run_atlas (--nthreads 4)
[2026-01-11 08:01:30] Arguments: --nthreads 4
[2026-01-11 08:01:30] Threads: 4
[2026-01-11 08:01:30] Checking for CVMFS
[2026-01-11 08:01:30] No cvmfs_config command found, will try listing directly
[2026-01-11 08:01:30] CVMFS is ok
[2026-01-11 08:01:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 08:01:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 08:01:30] Further information can be found at the LHC@home message board.
[2026-01-11 08:01:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 08:01:30] Checking for apptainer binary...
[2026-01-11 08:01:30] which: no apptainer in ((null))
[2026-01-11 08:01:30] apptainer is not installed, using version from CVMFS
[2026-01-11 08:01:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 08:01:30] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2026-01-11 08:01:30] apptainer works
[2026-01-11 08:01:30] Set ATHENA_PROC_NUMBER=4
[2026-01-11 08:01:30] Set ATHENA_CORE_NUMBER=4
[2026-01-11 08:01:30] Starting ATLAS job with PandaID=6962918436
[2026-01-11 08:01:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot88/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 12:18:37]  *** The last 200 lines of the pilot log: ***
[2026-01-11 12:18:37] 2026-01-11 10:48:18,108 | INFO     | mean y: 2336933.929245283
[2026-01-11 12:18:37] 2026-01-11 10:48:18,108 | INFO     | intersect: -1743916076.689369
[2026-01-11 12:18:37] 2026-01-11 10:48:18,109 | INFO     | chi2: 0.0033026282498700827
[2026-01-11 12:18:37] 2026-01-11 10:48:18,109 | INFO     | current chi2=0.0033026282498700827 (change=55.439538016957 %)
[2026-01-11 12:18:37] 2026-01-11 10:48:18,109 | INFO     | sum of square deviations: 2750295288.0
[2026-01-11 12:18:37] 2026-01-11 10:48:18,111 | INFO     | sum of deviations: 2514626912.0
[2026-01-11 12:18:37] 2026-01-11 10:48:18,111 | INFO     | mean x: 1768122138.0
[2026-01-11 12:18:37] 2026-01-11 10:48:18,111 | INFO     | mean y: 2337246.0096618356
[2026-01-11 12:18:37] 2026-01-11 10:48:18,111 | INFO     | intersect: -1614277352.1817226
[2026-01-11 12:18:37] 2026-01-11 10:48:18,111 | INFO     | chi2: 0.0011833432493935164
[2026-01-11 12:18:37] 2026-01-11 10:48:18,111 | INFO     | current chi2=0.0011833432493935164 (change=64.16965035528699 %)
[2026-01-11 12:18:37] 2026-01-11 10:48:18,112 | INFO     | sum of square deviations: 2555770710.5
[2026-01-11 12:18:37] 2026-01-11 10:48:18,113 | INFO     | sum of deviations: 1720501980.5000002
[2026-01-11 12:18:37] 2026-01-11 10:48:18,113 | INFO     | mean x: 1768122290.5
[2026-01-11 12:18:37] 2026-01-11 10:48:18,113 | INFO     | mean y: 2337867.5594059406
[2026-01-11 12:18:37] 2026-01-11 10:48:18,113 | INFO     | intersect: -1187932405.933286
[2026-01-11 12:18:37] 2026-01-11 10:48:18,114 | INFO     | chi2: 0.0007775307062150954
[2026-01-11 12:18:37] 2026-01-11 10:48:18,114 | INFO     | current chi2=0.0007775307062150954 (change=34.29373035984333 %)
[2026-01-11 12:18:37] 2026-01-11 10:48:18,114 | INFO     | sum of square deviations: 2370641658.0
[2026-01-11 12:18:37] 2026-01-11 10:48:18,115 | INFO     | sum of deviations: 1150444384.0
[2026-01-11 12:18:37] 2026-01-11 10:48:18,116 | INFO     | mean x: 1768122443.0
[2026-01-11 12:18:37] 2026-01-11 10:48:18,116 | INFO     | mean y: 2338337.30964467
[2026-01-11 12:18:37] 2026-01-11 10:48:18,116 | INFO     | intersect: -855710591.3039728
[2026-01-11 12:18:37] 2026-01-11 10:48:18,116 | INFO     | chi2: 0.0005649746875000387
[2026-01-11 12:18:37] 2026-01-11 10:48:18,116 | INFO     | current chi2=0.0005649746875000387 (change=27.337315043125187 %)
[2026-01-11 12:18:37] 2026-01-11 10:48:18,116 | INFO     | sum of square deviations: 2194675568.0
[2026-01-11 12:18:37] 2026-01-11 10:48:18,118 | INFO     | sum of deviations: 610705373.5
[2026-01-11 12:18:37] 2026-01-11 10:48:18,118 | INFO     | mean x: 1768122595.5
[2026-01-11 12:18:37] 2026-01-11 10:48:18,118 | INFO     | mean y: 2338805.078125
[2026-01-11 12:18:37] 2026-01-11 10:48:18,118 | INFO     | intersect: -489671032.6504813
[2026-01-11 12:18:37] 2026-01-11 10:48:18,118 | INFO     | chi2: 0.00033222391387166495
[2026-01-11 12:18:37] 2026-01-11 10:48:18,118 | INFO     | current chi2=0.00033222391387166495 (change=41.19667283826017 %)
[2026-01-11 12:18:37] 2026-01-11 10:48:18,119 | INFO     | sum of square deviations: 2027639878.0
[2026-01-11 12:18:37] 2026-01-11 10:48:18,120 | INFO     | sum of deviations: 346742726.99999964
[2026-01-11 12:18:37] 2026-01-11 10:48:18,120 | INFO     | mean x: 1768122748.0
[2026-01-11 12:18:37] 2026-01-11 10:48:18,120 | INFO     | mean y: 2339043.689839572
[2026-01-11 12:18:37] 2026-01-11 10:48:18,120 | INFO     | intersect: -300024166.8409079
[2026-01-11 12:18:37] 2026-01-11 10:48:18,120 | INFO     | chi2: 0.000231628681867175
[2026-01-11 12:18:37] 2026-01-11 10:48:18,121 | INFO     | current chi2=0.000231628681867175 (change=30.279347092199078 %)
[2026-01-11 12:18:37] 2026-01-11 10:48:18,121 | INFO     | sum of square deviations: 1869302025.5
[2026-01-11 12:18:37] 2026-01-11 10:48:18,122 | INFO     | sum of deviations: 243868118.0
[2026-01-11 12:18:37] 2026-01-11 10:48:18,122 | INFO     | mean x: 1768122900.5
[2026-01-11 12:18:37] 2026-01-11 10:48:18,122 | INFO     | mean y: 2339142.824175824
[2026-01-11 12:18:37] 2026-01-11 10:48:18,122 | INFO     | intersect: -228329201.96740597
[2026-01-11 12:18:37] 2026-01-11 10:48:18,123 | INFO     | chi2: 0.00022438475518921834
[2026-01-11 12:18:37] 2026-01-11 10:48:18,123 | INFO     | current chi2=0.00022438475518921834 (change=3.127387601381167 %)
[2026-01-11 12:18:37] 2026-01-11 10:48:18,123 | INFO     | left removable region: 80
[2026-01-11 12:18:37] 2026-01-11 10:48:18,123 | INFO     | sum of square deviations: 779958810.0
[2026-01-11 12:18:37] 2026-01-11 10:48:18,124 | INFO     | sum of deviations: -411595395.50000006
[2026-01-11 12:18:37] 2026-01-11 10:48:18,124 | INFO     | mean x: 1768123937.5
[2026-01-11 12:18:37] 2026-01-11 10:48:18,124 | INFO     | mean y: 2340095.2279411764
[2026-01-11 12:18:37] 2026-01-11 10:48:18,124 | INFO     | intersect: 935404331.4641212
[2026-01-11 12:18:37] 2026-01-11 10:48:18,124 | INFO     | chi2: 7.813054414314707e-05
[2026-01-11 12:18:37] 2026-01-11 10:48:18,125 | INFO     | current memory leak: -0.53 B/s (using 136 data points, chi2=0.00)
[2026-01-11 12:18:37] 2026-01-11 10:48:18,125 | INFO     | could have reported an average CPU frequency of 2676 MHz (11 samples)
[2026-01-11 12:18:37] 2026-01-11 10:48:18,125 | INFO     | ..............................
[2026-01-11 12:18:37] 2026-01-11 10:48:18,125 | INFO     | . Timing measurements:
[2026-01-11 12:18:37] 2026-01-11 10:48:18,125 | INFO     | . get job = 0 s
[2026-01-11 12:18:37] 2026-01-11 10:48:18,126 | INFO     | . initial setup = 1 s
[2026-01-11 12:18:37] 2026-01-11 10:48:18,126 | INFO     | . payload setup = 9 s
[2026-01-11 12:18:37] 2026-01-11 10:48:18,126 | INFO     | . stage-in = 0 s
[2026-01-11 12:18:37] 2026-01-11 10:48:18,126 | INFO     | . payload execution = 13548 s
[2026-01-11 12:18:37] 2026-01-11 10:48:18,126 | INFO     | . stage-out = 1 s
[2026-01-11 12:18:37] 2026-01-11 10:48:18,126 | INFO     | . log creation = 0 s
[2026-01-11 12:18:37] 2026-01-11 10:48:18,126 | INFO     | ..............................
[2026-01-11 12:18:37] 2026-01-11 10:48:18,221 | INFO     | 
[2026-01-11 12:18:37] 2026-01-11 10:48:18,222 | INFO     | job summary report
[2026-01-11 12:18:37] 2026-01-11 10:48:18,222 | INFO     | --------------------------------------------------
[2026-01-11 12:18:37] 2026-01-11 10:48:18,222 | INFO     | PanDA job id: 6962918436
[2026-01-11 12:18:37] 2026-01-11 10:48:18,222 | INFO     | task id: 47898826
[2026-01-11 12:18:37] 2026-01-11 10:48:18,222 | INFO     | errors: (none)
[2026-01-11 12:18:37] 2026-01-11 10:48:18,222 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 12:18:37] 2026-01-11 10:48:18,222 | INFO     | pilot state: finished 
[2026-01-11 12:18:37] 2026-01-11 10:48:18,222 | INFO     | transexitcode: 0
[2026-01-11 12:18:37] 2026-01-11 10:48:18,222 | INFO     | exeerrorcode: 0
[2026-01-11 12:18:37] 2026-01-11 10:48:18,222 | INFO     | exeerrordiag: 
[2026-01-11 12:18:37] 2026-01-11 10:48:18,222 | INFO     | exitcode: 0
[2026-01-11 12:18:37] 2026-01-11 10:48:18,222 | INFO     | exitmsg: OK
[2026-01-11 12:18:37] 2026-01-11 10:48:18,222 | INFO     | cpuconsumptiontime: 51684 s
[2026-01-11 12:18:37] 2026-01-11 10:48:18,223 | INFO     | nevents: 400
[2026-01-11 12:18:37] 2026-01-11 10:48:18,223 | INFO     | neventsw: 0
[2026-01-11 12:18:37] 2026-01-11 10:48:18,223 | INFO     | pid: 79969
[2026-01-11 12:18:37] 2026-01-11 10:48:18,223 | INFO     | pgrp: 79969
[2026-01-11 12:18:37] 2026-01-11 10:48:18,223 | INFO     | corecount: 4
[2026-01-11 12:18:37] 2026-01-11 10:48:18,223 | INFO     | event service: False
[2026-01-11 12:18:37] 2026-01-11 10:48:18,223 | INFO     | sizes: {0: 2283809, 1: 2284008, 8: 2284270, 11: 2284298, 13561: 2315238, 13562: 2315237, 13564: 2324441, 13566: 2324497, 13574: 2324691}
[2026-01-11 12:18:37] 2026-01-11 10:48:18,223 | INFO     | --------------------------------------------------
[2026-01-11 12:18:37] 2026-01-11 10:48:18,223 | INFO     | 
[2026-01-11 12:18:37] 2026-01-11 10:48:18,223 | INFO     | executing command: ls -lF /scratch/boinc/var/slot88/slots/0
[2026-01-11 12:18:37] 2026-01-11 10:48:18,256 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,257 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,257 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,257 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,257 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,257 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,257 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,257 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,257 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,257 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,258 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,258 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,258 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,258 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,258 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,258 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,258 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,258 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 12:18:37] 2026-01-11 10:48:18,258 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,258 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 12:18:37] 2026-01-11 10:48:18,259 | INFO     | job 6962918436 has completed (purged errors)
[2026-01-11 12:18:37] 2026-01-11 10:48:18,259 | INFO     | overall cleanup function is called
[2026-01-11 12:18:37] 2026-01-11 10:48:19,268 | INFO     | --- collectZombieJob: --- 10, [79969]
[2026-01-11 12:18:37] 2026-01-11 10:48:19,269 | INFO     | zombie collector waiting for pid 79969
[2026-01-11 12:18:37] 2026-01-11 10:48:19,269 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 12:18:37] 2026-01-11 10:48:19,269 | INFO     | collected zombie processes
[2026-01-11 12:18:37] 2026-01-11 10:48:19,269 | INFO     | will attempt to kill all subprocesses of pid=79969
[2026-01-11 12:18:37] 2026-01-11 10:48:20,113 | INFO     | process IDs to be killed: [79969] (in reverse order)
[2026-01-11 12:18:37] 2026-01-11 10:48:20,385 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 12:18:37] 2026-01-11 10:48:20,385 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 12:18:37] 2026-01-11 10:48:20,422 | INFO     | did not find any defunct processes belonging to 79969
[2026-01-11 12:18:37] 2026-01-11 10:48:20,456 | INFO     | did not find any defunct processes belonging to 79969
[2026-01-11 12:18:37] 2026-01-11 10:48:20,457 | INFO     | ready for new job
[2026-01-11 12:18:37] 2026-01-11 10:48:20,457 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 12:18:37] 2026-01-11 10:48:20,460 | INFO     | ***************************************
[2026-01-11 12:18:37] 2026-01-11 10:48:20,460 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 12:18:37] 2026-01-11 10:48:20,460 | INFO     | ***************************************
[2026-01-11 12:18:37] 2026-01-11 10:48:20,460 | INFO     | 
[2026-01-11 12:18:37] 2026-01-11 10:48:20,469 | INFO     | architecture information:
[2026-01-11 12:18:37] 2026-01-11 10:48:20,469 | INFO     | executing command: cat /etc/os-release
[2026-01-11 12:18:37] 2026-01-11 10:48:20,498 | INFO     | cat /etc/os-release:
[2026-01-11 12:18:37] NAME="CentOS Linux"
[2026-01-11 12:18:37] VERSION="7 (Core)"
[2026-01-11 12:18:37] ID="centos"
[2026-01-11 12:18:37] ID_LIKE="rhel fedora"
[2026-01-11 12:18:37] VERSION_ID="7"
[2026-01-11 12:18:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 12:18:37] ANSI_COLOR="0;31"
[2026-01-11 12:18:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 12:18:37] HOME_URL="https://www.centos.org/"
[2026-01-11 12:18:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 12:18:37] 
[2026-01-11 12:18:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 12:18:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 12:18:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 12:18:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 12:18:37] 
[2026-01-11 12:18:37] 2026-01-11 10:48:20,499 | INFO     | ***************************************
[2026-01-11 12:18:37] 2026-01-11 10:48:21,002 | INFO     | executing command: df -mP /scratch/boinc/var/slot88/slots/0
[2026-01-11 12:18:37] 2026-01-11 10:48:21,025 | INFO     | sufficient remaining disk space (3356058714112 B)
[2026-01-11 12:18:37] 2026-01-11 10:48:21,025 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 12:18:37] 2026-01-11 10:48:21,026 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 12:18:37] 2026-01-11 10:48:21,026 | INFO     | update_server=False
[2026-01-11 12:18:37] 2026-01-11 10:48:21,026 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 12:18:37] 2026-01-11 10:48:21,026 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 12:18:37] 2026-01-11 10:48:21,027 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 12:18:37] 2026-01-11 10:48:21,027 | INFO     | aborting loop
[2026-01-11 12:18:37] 2026-01-11 10:48:21,041 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 12:18:37] 2026-01-11 10:48:21,210 | INFO     | all job control threads have been joined
[2026-01-11 12:18:37] 2026-01-11 10:48:21,731 | INFO     | all data control threads have been joined
[2026-01-11 12:18:37] 2026-01-11 10:48:22,031 | INFO     | [job] retrieve thread has finished
[2026-01-11 12:18:37] 2026-01-11 10:48:22,033 | INFO     | [job] job monitor thread has finished
[2026-01-11 12:18:37] 2026-01-11 10:48:22,216 | INFO     | [job] control thread has finished
[2026-01-11 12:18:37] 2026-01-11 10:48:22,255 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 12:18:37] 2026-01-11 10:48:22,301 | INFO     | [data] copytool_in thread has finished
[2026-01-11 12:18:37] 2026-01-11 10:48:22,434 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 12:18:37] 2026-01-11 10:48:22,480 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 12:18:37] 2026-01-11 10:48:22,502 | INFO     | all payload control threads have been joined
[2026-01-11 12:18:37] 2026-01-11 10:48:22,544 | INFO     | [payload] validate_post thread has finished
[2026-01-11 12:18:37] 2026-01-11 10:48:22,736 | INFO     | [data] control thread has finished
[2026-01-11 12:18:37] 2026-01-11 10:48:22,811 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 12:18:37] 2026-01-11 10:48:23,047 | INFO     | [data] copytool_out thread has finished
[2026-01-11 12:18:37] 2026-01-11 10:48:23,234 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 12:18:37] 2026-01-11 10:48:23,356 | INFO     | [payload] failed_post thread has finished
[2026-01-11 12:18:37] 2026-01-11 10:48:23,495 | INFO     | [job] validate thread has finished
[2026-01-11 12:18:37] 2026-01-11 10:48:23,507 | INFO     | [payload] control thread has finished
[2026-01-11 12:18:37] 2026-01-11 10:48:24,240 | INFO     | [job] queue monitor thread has finished
[2026-01-11 12:18:37] 2026-01-11 10:48:25,033 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 12:18:37] 2026-01-11 10:48:50,743 | INFO     | PID=72629 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 12:18:37] 2026-01-11 10:48:50,744 | INFO     | .. there are 8 such processes running
[2026-01-11 12:18:37] 2026-01-11 10:48:50,744 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 12:18:37] 2026-01-11 10:48:50,744 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 12:18:37] 2026-01-11 10:48:50,744 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 12:18:37] 2026-01-11 10:49:06,928 | INFO     | [monitor] cgroup control has ended
[2026-01-11 12:18:37] 2026-01-11 10:49:07,833 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22752710367040)>', '<ExcThread(monitor, started 22752473876224)>']
[2026-01-11 12:18:37] 2026-01-11 10:49:08,830 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 12:18:37] 2026-01-11 10:49:08,831 | INFO     | [monitor] control thread has ended
[2026-01-11 12:18:37] 2026-01-11 10:49:12,859 | INFO     | all workflow threads have been joined
[2026-01-11 12:18:37] 2026-01-11 10:49:12,860 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 12:18:37] 2026-01-11 10:49:12,860 | INFO     | traces error code: 0
[2026-01-11 12:18:37] 2026-01-11 10:49:12,861 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 12:18:37] 2026-01-11 10:49:13,064 [wrapper] ==== pilot stdout END ====
[2026-01-11 12:18:37] 2026-01-11 10:49:13,068 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 12:18:37] 2026-01-11 10:49:13,072 [wrapper] pilotpid: 72629
[2026-01-11 12:18:37] 2026-01-11 10:49:13,076 [wrapper] Pilot exit status: 0
[2026-01-11 12:18:37] 2026-01-11 10:49:13,095 [wrapper] pandaids: 6962918436
[2026-01-11 12:18:37] 2026-01-11 10:49:13,279 [wrapper] cleanup supervisor_pilot  518321 72630
[2026-01-11 12:18:37] 2026-01-11 10:49:13,284 [wrapper] Test setup, not cleaning
[2026-01-11 12:18:37] 2026-01-11 10:49:13,288 [wrapper] apfmon messages muted
[2026-01-11 12:18:37] 2026-01-11 10:49:13,291 [wrapper] ==== wrapper stdout END ====
[2026-01-11 12:18:37] 2026-01-11 10:49:13,295 [wrapper] ==== wrapper stderr END ====
[2026-01-11 12:18:37]  *** Error codes and diagnostics ***
[2026-01-11 12:18:37]     "exeErrorCode": 0,
[2026-01-11 12:18:37]     "exeErrorDiag": "",
[2026-01-11 12:18:37]     "pilotErrorCode": 0,
[2026-01-11 12:18:37]     "pilotErrorDiag": "",
[2026-01-11 12:18:37]  *** Listing of results directory ***
[2026-01-11 12:18:37] total 441440
[2026-01-11 12:18:37] -rwx------ 1 boinc boinc     36322 Jan  8 09:06 runpilot2-wrapper.sh
[2026-01-11 12:18:37] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:11 queuedata.json
[2026-01-11 12:18:37] -rw-r--r-- 1 boinc boinc    579449 Jan  8 09:11 pilot3.tar.gz
[2026-01-11 12:18:37] -rw-r--r-- 1 boinc boinc       100 Jan 11 08:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 12:18:37] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 08:01 run_atlas
[2026-01-11 12:18:37] -rw-r--r-- 1 boinc boinc       105 Jan 11 08:01 job.xml
[2026-01-11 12:18:37] -rw-r--r-- 1 boinc boinc      6688 Jan 11 08:01 init_data.xml
[2026-01-11 12:18:37] -rw-r--r-- 2 boinc boinc 224082978 Jan 11 08:01 EVNT.47898824._000795.pool.root.1
[2026-01-11 12:18:37] -rw-r--r-- 2 boinc boinc     15847 Jan 11 08:01 start_atlas.sh
[2026-01-11 12:18:37] drwxrwx--x 2 boinc boinc      4096 Jan 11 08:01 shared
[2026-01-11 12:18:37] -rw-r--r-- 2 boinc boinc    592400 Jan 11 08:01 input.tar.gz
[2026-01-11 12:18:37] -rw-r--r-- 1 boinc boinc         0 Jan 11 08:01 boinc_lockfile
[2026-01-11 12:18:37] -rw-r--r-- 1 boinc boinc      2519 Jan 11 08:01 pandaJob.out
[2026-01-11 12:18:37] -rw------- 1 boinc boinc    989548 Jan 11 08:01 agis_schedconf.cvmfs.json
[2026-01-11 12:18:37] drwx------ 5 boinc boinc      4096 Jan 11 08:01 pilot3
[2026-01-11 12:18:37] -rw------- 1 boinc boinc 219475118 Jan 11 11:47 HITS.47898826._020484.pool.root.1
[2026-01-11 12:18:37] -rw-r--r-- 1 boinc boinc       528 Jan 11 11:47 boinc_task_state.xml
[2026-01-11 12:18:37] -rw------- 1 boinc boinc        95 Jan 11 11:47 pilot_heartbeat.json
[2026-01-11 12:18:37] -rw------- 1 boinc boinc      1031 Jan 11 11:48 memory_monitor_summary.json
[2026-01-11 12:18:37] -rw------- 1 boinc boinc   1516240 Jan 11 11:48 agis_ddmendpoints.agis.ALL.json
[2026-01-11 12:18:37] -rw------- 1 boinc boinc    390495 Jan 11 11:48 log.47898826._020484.job.log.tgz.1
[2026-01-11 12:18:37] -rw------- 1 boinc boinc      7788 Jan 11 11:48 heartbeat.json
[2026-01-11 12:18:37] -rw------- 1 boinc boinc      4832 Jan 11 11:49 pilotlog.txt
[2026-01-11 12:18:37] -rw------- 1 boinc boinc   1889462 Jan 11 11:49 log.47898826._020484.job.log.1
[2026-01-11 12:18:37] -rw------- 1 boinc boinc       357 Jan 11 11:49 output.list
[2026-01-11 12:18:37] -rw-r--r-- 1 boinc boinc       620 Jan 11 11:49 runtime_log
[2026-01-11 12:18:37] -rw------- 1 boinc boinc   2304000 Jan 11 11:49 result.tar.gz
[2026-01-11 12:18:37] -rw------- 1 boinc boinc       666 Jan 11 11:49 vcFODmYD0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmefeKDmlrgJ8m.diag
[2026-01-11 12:18:37] -rw-r--r-- 1 boinc boinc      9206 Jan 11 11:49 runtime_log.err
[2026-01-11 12:18:37] -rw-r--r-- 1 boinc boinc        26 Jan 11 12:18 wrapper_checkpoint.txt
[2026-01-11 12:18:37] -rw-r--r-- 1 boinc boinc      8192 Jan 11 12:18 boinc_mmap_file
[2026-01-11 12:18:37] -rw-r--r-- 1 boinc boinc     20735 Jan 11 12:18 stderr.txt
[2026-01-11 12:18:37] HITS file was successfully produced:
[2026-01-11 12:18:37] -rw------- 1 boinc boinc 219475118 Jan 11 11:47 shared/HITS.pool.root.1
[2026-01-11 12:18:37]  *** Contents of shared directory: ***
[2026-01-11 12:18:37] total 436016
[2026-01-11 12:18:37] -rw-r--r-- 2 boinc boinc 224082978 Jan 11 08:01 ATLAS.root_0
[2026-01-11 12:18:37] -rw-r--r-- 2 boinc boinc     15847 Jan 11 08:01 start_atlas.sh
[2026-01-11 12:18:37] -rw-r--r-- 2 boinc boinc    592400 Jan 11 08:01 input.tar.gz
[2026-01-11 12:18:37] -rw------- 1 boinc boinc 219475118 Jan 11 11:47 HITS.pool.root.1
[2026-01-11 12:18:37] -rw------- 1 boinc boinc   2304000 Jan 11 11:49 result.tar.gz
12:18:38 (68622): run_atlas exited; CPU time 52607.147434
12:18:38 (68622): called boinc_finish(0)

</stderr_txt>
]]>

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