Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:40:46 (2981137): wrapper (7.7.26015): starting
12:40:46 (2981137): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 12:40:46] Arguments: --nthreads 8
[2026-01-08 12:40:46] Threads: 8
[2026-01-08 12:40:46] Checking for CVMFS
[2026-01-08 12:40:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 12:40:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 12:40:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 12:40:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 12:40:48] 2.13.3.0 12755 92275 383116 154915 0 104 28006467 40960001 11300 16776704 0 125995976 99.594 147829833 11797 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 12:40:48] CVMFS is ok
[2026-01-08 12:40:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 12:40:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 12:40:48] Further information can be found at the LHC@home message board.
[2026-01-08 12:40:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 12:40:48] Checking for apptainer binary...
[2026-01-08 12:40:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 12:40:48] Running /usr/bin/apptainer --version
[2026-01-08 12:40:49] apptainer version 1.4.5-2.el9
[2026-01-08 12:40:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 12:40:51] c7-10-13.aglt2.org
[2026-01-08 12:40:51] apptainer works
[2026-01-08 12:40:51] Set ATHENA_PROC_NUMBER=8
[2026-01-08 12:40:51] Set ATHENA_CORE_NUMBER=8
[2026-01-08 12:40:52] Starting ATLAS job with PandaID=6962918645
[2026-01-08 12:40:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 09:28:45]  *** The last 200 lines of the pilot log: ***
[2026-01-09 09:28:45] 2026-01-09 06:43:58,420 | INFO     | time since job start (46889s) is within the limit (174528.0s)
[2026-01-09 09:28:45] 2026-01-09 06:43:59,216 | INFO     | monitor loop #2606: job 0:6962918645 is in state 'finished'
[2026-01-09 09:28:45] 2026-01-09 06:43:59,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 09:28:45] 2026-01-09 06:44:00,426 | INFO     | time since job start (46891s) is within the limit (174528.0s)
[2026-01-09 09:28:45] 2026-01-09 06:44:01,721 | INFO     | monitor loop #2607: job 0:6962918645 is in state 'finished'
[2026-01-09 09:28:45] 2026-01-09 06:44:01,722 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 09:28:45] 2026-01-09 06:44:02,168 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 09:28:45] 2026-01-09 06:44:02,182 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3292.097312500001
[2026-01-09 09:28:45] 2026-01-09 06:44:02,215 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6962918645/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 09:28:45] 2026-01-09 06:44:02,216 | INFO     | extracted standard info from prmon json
[2026-01-09 09:28:45] 2026-01-09 06:44:02,217 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 09:28:45] 2026-01-09 06:44:02,217 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 09:28:45] 2026-01-09 06:44:02,217 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 09:28:45] 2026-01-09 06:44:02,217 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 09:28:45] 2026-01-09 06:44:02,252 | INFO     | fitting pss+swap vs Time
[2026-01-09 09:28:45] 2026-01-09 06:44:02,254 | INFO     | sum of square deviations: 139360677370.66064
[2026-01-09 09:28:45] 2026-01-09 06:44:02,374 | INFO     | sum of deviations: 238775744636.1462
[2026-01-09 09:28:45] 2026-01-09 06:44:02,374 | INFO     | mean x: 1767917623.116188
[2026-01-09 09:28:45] 2026-01-09 06:44:02,374 | INFO     | mean y: 2506549.762402089
[2026-01-09 09:28:45] 2026-01-09 06:44:02,374 | INFO     | intersect: -3026582106.2303467
[2026-01-09 09:28:45] 2026-01-09 06:44:02,377 | INFO     | chi2: 4.353829788703505
[2026-01-09 09:28:45] 2026-01-09 06:44:02,381 | INFO     | sum of square deviations: 136649403443.48756
[2026-01-09 09:28:45] 2026-01-09 06:44:02,433 | INFO     | sum of deviations: 285080950010.80286
[2026-01-09 09:28:45] 2026-01-09 06:44:02,433 | INFO     | mean x: 1767917470.6189225
[2026-01-09 09:28:45] 2026-01-09 06:44:02,433 | INFO     | mean y: 2509139.9303547964
[2026-01-09 09:28:45] 2026-01-09 06:44:02,433 | INFO     | intersect: -3685758641.4447107
[2026-01-09 09:28:45] 2026-01-09 06:44:02,436 | INFO     | chi2: 3.671819210466352
[2026-01-09 09:28:45] 2026-01-09 06:44:02,436 | INFO     | current chi2=3.671819210466352 (change=15.664612796915153 %)
[2026-01-09 09:28:45] 2026-01-09 06:44:02,436 | INFO     | right removable region: 760
[2026-01-09 09:28:45] 2026-01-09 06:44:02,439 | INFO     | sum of square deviations: 136648928000.01302
[2026-01-09 09:28:45] 2026-01-09 06:44:02,447 | INFO     | time since job start (46893s) is within the limit (174528.0s)
[2026-01-09 09:28:45] 2026-01-09 06:44:02,537 | INFO     | sum of deviations: 14296774009.575546
[2026-01-09 09:28:45] 2026-01-09 06:44:02,537 | INFO     | mean x: 1767917775.6268067
[2026-01-09 09:28:45] 2026-01-09 06:44:02,537 | INFO     | mean y: 2519163.8541392903
[2026-01-09 09:28:45] 2026-01-09 06:44:02,538 | INFO     | intersect: -182447679.83486158
[2026-01-09 09:28:45] 2026-01-09 06:44:02,541 | INFO     | chi2: 1.1984884308988684
[2026-01-09 09:28:45] 2026-01-09 06:44:02,541 | INFO     | current chi2=1.1984884308988684 (change=72.47277709366408 %)
[2026-01-09 09:28:45] 2026-01-09 06:44:02,543 | INFO     | sum of square deviations: 133972714275.50679
[2026-01-09 09:28:45] 2026-01-09 06:44:02,591 | INFO     | sum of deviations: -40983078902.597855
[2026-01-09 09:28:45] 2026-01-09 06:44:02,591 | INFO     | mean x: 1767917928.1335979
[2026-01-09 09:28:45] 2026-01-09 06:44:02,592 | INFO     | mean y: 2522309.3227513228
[2026-01-09 09:28:45] 2026-01-09 06:44:02,592 | INFO     | intersect: 543339298.3181211
[2026-01-09 09:28:45] 2026-01-09 06:44:02,594 | INFO     | chi2: 0.9722336841128034
[2026-01-09 09:28:45] 2026-01-09 06:44:02,594 | INFO     | current chi2=0.9722336841128034 (change=18.878342164419017 %)
[2026-01-09 09:28:45] 2026-01-09 06:44:02,595 | INFO     | left removable region: 20
[2026-01-09 09:28:45] 2026-01-09 06:44:02,597 | INFO     | sum of square deviations: 125644901878.66342
[2026-01-09 09:28:45] 2026-01-09 06:44:02,643 | INFO     | sum of deviations: 15632704210.439144
[2026-01-09 09:28:45] 2026-01-09 06:44:02,643 | INFO     | mean x: 1767918050.1391892
[2026-01-09 09:28:45] 2026-01-09 06:44:02,643 | INFO     | mean y: 2524462.8986486485
[2026-01-09 09:28:45] 2026-01-09 06:44:02,643 | INFO     | intersect: -217439415.72184587
[2026-01-09 09:28:45] 2026-01-09 06:44:02,646 | INFO     | chi2: 0.24188926544513276
[2026-01-09 09:28:45] 2026-01-09 06:44:02,646 | INFO     | current memory leak: 0.12 B/s (using 740 data points, chi2=0.24)
[2026-01-09 09:28:45] 2026-01-09 06:44:02,648 | INFO     | could have reported an average CPU frequency of 3291 MHz (29 samples)
[2026-01-09 09:28:45] 2026-01-09 06:44:02,648 | INFO     | ..............................
[2026-01-09 09:28:45] 2026-01-09 06:44:02,648 | INFO     | . Timing measurements:
[2026-01-09 09:28:45] 2026-01-09 06:44:02,648 | INFO     | . get job = 1 s
[2026-01-09 09:28:45] 2026-01-09 06:44:02,648 | INFO     | . initial setup = 9 s
[2026-01-09 09:28:45] 2026-01-09 06:44:02,649 | INFO     | . payload setup = 40 s
[2026-01-09 09:28:45] 2026-01-09 06:44:02,649 | INFO     | . stage-in = 0 s
[2026-01-09 09:28:45] 2026-01-09 06:44:02,649 | INFO     | . payload execution = 46733 s
[2026-01-09 09:28:45] 2026-01-09 06:44:02,649 | INFO     | . stage-out = 4 s
[2026-01-09 09:28:45] 2026-01-09 06:44:02,649 | INFO     | . log creation = 0 s
[2026-01-09 09:28:45] 2026-01-09 06:44:02,649 | INFO     | ..............................
[2026-01-09 09:28:45] 2026-01-09 06:44:02,884 | INFO     | 
[2026-01-09 09:28:45] 2026-01-09 06:44:02,884 | INFO     | job summary report
[2026-01-09 09:28:45] 2026-01-09 06:44:02,884 | INFO     | --------------------------------------------------
[2026-01-09 09:28:45] 2026-01-09 06:44:02,885 | INFO     | PanDA job id: 6962918645
[2026-01-09 09:28:45] 2026-01-09 06:44:02,885 | INFO     | task id: 47898826
[2026-01-09 09:28:45] 2026-01-09 06:44:02,885 | INFO     | errors: (none)
[2026-01-09 09:28:45] 2026-01-09 06:44:02,885 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 09:28:45] 2026-01-09 06:44:02,885 | INFO     | pilot state: finished 
[2026-01-09 09:28:45] 2026-01-09 06:44:02,885 | INFO     | transexitcode: 0
[2026-01-09 09:28:45] 2026-01-09 06:44:02,886 | INFO     | exeerrorcode: 0
[2026-01-09 09:28:45] 2026-01-09 06:44:02,886 | INFO     | exeerrordiag: 
[2026-01-09 09:28:45] 2026-01-09 06:44:02,886 | INFO     | exitcode: 0
[2026-01-09 09:28:45] 2026-01-09 06:44:02,886 | INFO     | exitmsg: OK
[2026-01-09 09:28:45] 2026-01-09 06:44:02,886 | INFO     | cpuconsumptiontime: 140310 s
[2026-01-09 09:28:45] 2026-01-09 06:44:02,886 | INFO     | nevents: 400
[2026-01-09 09:28:45] 2026-01-09 06:44:02,887 | INFO     | neventsw: 0
[2026-01-09 09:28:45] 2026-01-09 06:44:02,887 | INFO     | pid: 2997009
[2026-01-09 09:28:45] 2026-01-09 06:44:02,887 | INFO     | pgrp: 2997009
[2026-01-09 09:28:45] 2026-01-09 06:44:02,887 | INFO     | corecount: 8
[2026-01-09 09:28:45] 2026-01-09 06:44:02,887 | INFO     | event service: False
[2026-01-09 09:28:45] 2026-01-09 06:44:02,887 | INFO     | sizes: {0: 2283141, 1: 2283826, 2: 2284025, 3: 2284025, 15: 2284053, 26: 2284081, 37: 2284499, 47: 2284527, 46778: 2329201, 46779: 2329200, 46783: 2338254, 46784: 
[2026-01-09 09:28:45] 2026-01-09 06:44:02,888 | INFO     | --------------------------------------------------
[2026-01-09 09:28:45] 2026-01-09 06:44:02,888 | INFO     | 
[2026-01-09 09:28:45] 2026-01-09 06:44:02,888 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 09:28:45] 2026-01-09 06:44:02,927 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,927 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,928 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,928 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,928 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,928 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,928 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,928 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,929 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,929 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,929 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,929 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,929 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,929 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,930 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,930 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,930 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,930 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 09:28:45] 2026-01-09 06:44:02,930 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,931 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 09:28:45] 2026-01-09 06:44:02,931 | INFO     | job 6962918645 has completed (purged errors)
[2026-01-09 09:28:45] 2026-01-09 06:44:02,931 | INFO     | overall cleanup function is called
[2026-01-09 09:28:45] 2026-01-09 06:44:03,944 | INFO     | --- collectZombieJob: --- 10, [2997009]
[2026-01-09 09:28:45] 2026-01-09 06:44:03,953 | INFO     | zombie collector waiting for pid 2997009
[2026-01-09 09:28:45] 2026-01-09 06:44:03,953 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 09:28:45] 2026-01-09 06:44:03,953 | INFO     | collected zombie processes
[2026-01-09 09:28:45] 2026-01-09 06:44:03,954 | INFO     | will attempt to kill all subprocesses of pid=2997009
[2026-01-09 09:28:45] 2026-01-09 06:44:04,976 | INFO     | PID=2986238 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 09:28:45] 2026-01-09 06:44:04,976 | INFO     | .. there are 13 such processes running
[2026-01-09 09:28:45] 2026-01-09 06:44:05,697 | INFO     | process IDs to be killed: [2997009] (in reverse order)
[2026-01-09 09:28:45] 2026-01-09 06:44:07,610 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 09:28:45] 2026-01-09 06:44:07,611 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 09:28:45] 2026-01-09 06:44:07,637 | INFO     | did not find any defunct processes belonging to 2997009
[2026-01-09 09:28:45] 2026-01-09 06:44:07,659 | INFO     | did not find any defunct processes belonging to 2997009
[2026-01-09 09:28:45] 2026-01-09 06:44:07,659 | INFO     | ready for new job
[2026-01-09 09:28:45] 2026-01-09 06:44:07,659 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 09:28:45] 2026-01-09 06:44:07,696 | INFO     | ***************************************
[2026-01-09 09:28:45] 2026-01-09 06:44:07,697 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 09:28:45] 2026-01-09 06:44:07,725 | INFO     | ***************************************
[2026-01-09 09:28:45] 2026-01-09 06:44:07,725 | INFO     | 
[2026-01-09 09:28:45] 2026-01-09 06:44:07,745 | INFO     | architecture information:
[2026-01-09 09:28:45] 2026-01-09 06:44:07,751 | INFO     | executing command: cat /etc/os-release
[2026-01-09 09:28:45] 2026-01-09 06:44:07,970 | INFO     | cat /etc/os-release:
[2026-01-09 09:28:45] NAME="CentOS Linux"
[2026-01-09 09:28:45] VERSION="7 (Core)"
[2026-01-09 09:28:45] ID="centos"
[2026-01-09 09:28:45] ID_LIKE="rhel fedora"
[2026-01-09 09:28:45] VERSION_ID="7"
[2026-01-09 09:28:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 09:28:45] ANSI_COLOR="0;31"
[2026-01-09 09:28:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 09:28:45] HOME_URL="https://www.centos.org/"
[2026-01-09 09:28:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 09:28:45] 
[2026-01-09 09:28:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 09:28:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 09:28:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 09:28:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 09:28:45] 
[2026-01-09 09:28:45] 2026-01-09 06:44:07,971 | INFO     | ***************************************
[2026-01-09 09:28:45] 2026-01-09 06:44:08,473 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 09:28:45] 2026-01-09 06:44:08,633 | INFO     | sufficient remaining disk space (83995131904 B)
[2026-01-09 09:28:45] 2026-01-09 06:44:08,633 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 09:28:45] 2026-01-09 06:44:08,633 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 09:28:45] 2026-01-09 06:44:08,634 | INFO     | update_server=False
[2026-01-09 09:28:45] 2026-01-09 06:44:08,634 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 09:28:45] 2026-01-09 06:44:08,634 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:28:45] 2026-01-09 06:44:08,634 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 09:28:45] 2026-01-09 06:44:08,635 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 09:28:45] 2026-01-09 06:44:08,643 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:28:45] 2026-01-09 06:44:08,643 | INFO     | aborting loop
[2026-01-09 09:28:45] 2026-01-09 06:44:09,075 | INFO     | all data control threads have been joined
[2026-01-09 09:28:45] 2026-01-09 06:44:09,644 | INFO     | [job] retrieve thread has finished
[2026-01-09 09:28:45] 2026-01-09 06:44:09,645 | INFO     | [job] queue monitor thread has finished
[2026-01-09 09:28:45] 2026-01-09 06:44:09,654 | INFO     | [job] job monitor thread has finished
[2026-01-09 09:28:45] 2026-01-09 06:44:09,783 | INFO     | all job control threads have been joined
[2026-01-09 09:28:45] 2026-01-09 06:44:09,841 | INFO     | [payload] validate_post thread has finished
[2026-01-09 09:28:45] 2026-01-09 06:44:09,944 | INFO     | all payload control threads have been joined
[2026-01-09 09:28:45] 2026-01-09 06:44:09,955 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 09:28:45] 2026-01-09 06:44:10,081 | INFO     | [data] control thread has finished
[2026-01-09 09:28:45] 2026-01-09 06:44:10,650 | INFO     | [data] copytool_out thread has finished
[2026-01-09 09:28:45] 2026-01-09 06:44:10,731 | INFO     | [job] validate thread has finished
[2026-01-09 09:28:45] 2026-01-09 06:44:10,755 | INFO     | [data] copytool_in thread has finished
[2026-01-09 09:28:45] 2026-01-09 06:44:10,758 | INFO     | [payload] failed_post thread has finished
[2026-01-09 09:28:45] 2026-01-09 06:44:10,789 | INFO     | [job] control thread has finished
[2026-01-09 09:28:45] 2026-01-09 06:44:10,865 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 09:28:45] 2026-01-09 06:44:10,950 | INFO     | [payload] control thread has finished
[2026-01-09 09:28:45] 2026-01-09 06:44:11,037 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 09:28:45] 2026-01-09 06:44:11,060 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 09:28:45] 2026-01-09 06:44:12,644 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 09:28:45] 2026-01-09 06:44:39,749 | INFO     | PID=2986238 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 09:28:45] 2026-01-09 06:44:39,750 | INFO     | .. there are 13 such processes running
[2026-01-09 09:28:45] 2026-01-09 06:44:39,751 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 09:28:45] 2026-01-09 06:44:39,751 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 09:28:45] 2026-01-09 06:44:39,751 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 09:28:45] 2026-01-09 06:44:50,239 | INFO     | [monitor] cgroup control has ended
[2026-01-09 09:28:45] 2026-01-09 06:44:51,880 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140470894094144)>', '<ExcThread(monitor, started 140470244071168)>']
[2026-01-09 09:28:45] 2026-01-09 06:44:52,829 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 09:28:45] 2026-01-09 06:44:52,829 | INFO     | [monitor] control thread has ended
[2026-01-09 09:28:45] 2026-01-09 06:44:56,906 | INFO     | all workflow threads have been joined
[2026-01-09 09:28:45] 2026-01-09 06:44:56,906 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 09:28:45] 2026-01-09 06:44:56,907 | INFO     | traces error code: 0
[2026-01-09 09:28:45] 2026-01-09 06:44:56,907 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 09:28:45] 2026-01-09 06:44:57,417 [wrapper] ==== pilot stdout END ====
[2026-01-09 09:28:45] 2026-01-09 06:44:57,439 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 09:28:45] 2026-01-09 06:44:57,450 [wrapper] pilotpid: 2986238
[2026-01-09 09:28:45] 2026-01-09 06:44:57,458 [wrapper] Pilot exit status: 0
[2026-01-09 09:28:45] 2026-01-09 06:44:57,482 [wrapper] pandaids: 6962918645
[2026-01-09 09:28:45] 2026-01-09 06:44:57,689 [wrapper] cleanup supervisor_pilot 4054565 2986239
[2026-01-09 09:28:45] 2026-01-09 06:44:57,826 [wrapper] Test setup, not cleaning
[2026-01-09 09:28:45] 2026-01-09 06:44:57,832 [wrapper] apfmon messages muted
[2026-01-09 09:28:45] 2026-01-09 06:44:57,875 [wrapper] ==== wrapper stdout END ====
[2026-01-09 09:28:45] 2026-01-09 06:44:57,929 [wrapper] ==== wrapper stderr END ====
[2026-01-09 09:28:45]  *** Error codes and diagnostics ***
[2026-01-09 09:28:45]     "exeErrorCode": 0,
[2026-01-09 09:28:45]     "exeErrorDiag": "",
[2026-01-09 09:28:45]     "pilotErrorCode": 0,
[2026-01-09 09:28:45]     "pilotErrorDiag": "",
[2026-01-09 09:28:45]  *** Listing of results directory ***
[2026-01-09 09:28:45] total 455076
[2026-01-09 09:28:45] -rwx------. 1 boincer umatlas     36322 Jan  8 03:04 runpilot2-wrapper.sh
[2026-01-09 09:28:45] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:07 queuedata.json
[2026-01-09 09:28:45] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 03:09 pilot3.tar.gz
[2026-01-09 09:28:45] -rw-r--r--. 1 boincer umatlas       100 Jan  8 12:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 09:28:45] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 12:40 run_atlas
[2026-01-09 09:28:45] -rw-r--r--. 1 boincer umatlas       105 Jan  8 12:40 job.xml
[2026-01-09 09:28:45] -rw-r--r--. 2 boincer umatlas 224668912 Jan  8 12:40 EVNT.47898824._000802.pool.root.1
[2026-01-09 09:28:45] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 12:40 start_atlas.sh
[2026-01-09 09:28:45] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 12:40 shared
[2026-01-09 09:28:45] -rw-r--r--. 2 boincer umatlas    592399 Jan  8 12:40 input.tar.gz
[2026-01-09 09:28:45] -rw-r--r--. 1 boincer umatlas         0 Jan  8 12:40 boinc_lockfile
[2026-01-09 09:28:45] -rw-r--r--. 1 boincer umatlas      2519 Jan  8 12:40 pandaJob.out
[2026-01-09 09:28:45] -rw-------. 1 boincer umatlas        57 Jan  8 12:40 setup.sh.local
[2026-01-09 09:28:45] -rw-------. 1 boincer umatlas    989837 Jan  8 12:42 agis_schedconf.cvmfs.json
[2026-01-09 09:28:45] drwx------. 5 boincer umatlas      4096 Jan  8 12:42 pilot3
[2026-01-09 09:28:45] -rw-------. 1 boincer umatlas 224569884 Jan  9 01:41 HITS.47898826._020665.pool.root.1
[2026-01-09 09:28:45] -rw-r--r--. 1 boincer umatlas       532 Jan  9 01:41 boinc_task_state.xml
[2026-01-09 09:28:45] -rw-------. 1 boincer umatlas      1028 Jan  9 01:43 memory_monitor_summary.json
[2026-01-09 09:28:45] -rw-------. 1 boincer umatlas   1516240 Jan  9 01:43 agis_ddmendpoints.agis.ALL.json
[2026-01-09 09:28:45] -rw-------. 1 boincer umatlas    855882 Jan  9 01:43 log.47898826._020665.job.log.tgz.1
[2026-01-09 09:28:45] -rw-------. 1 boincer umatlas      7774 Jan  9 01:44 heartbeat.json
[2026-01-09 09:28:45] -rw-------. 1 boincer umatlas        95 Jan  9 01:44 pilot_heartbeat.json
[2026-01-09 09:28:45] -rw-------. 1 boincer umatlas      4824 Jan  9 01:44 pilotlog.txt
[2026-01-09 09:28:45] -rw-------. 1 boincer umatlas   5568992 Jan  9 01:44 log.47898826._020665.job.log.1
[2026-01-09 09:28:45] -rw-------. 1 boincer umatlas       357 Jan  9 01:44 output.list
[2026-01-09 09:28:45] -rw-r--r--. 1 boincer umatlas       620 Jan  9 01:44 runtime_log
[2026-01-09 09:28:45] -rw-------. 1 boincer umatlas   6440960 Jan  9 01:44 result.tar.gz
[2026-01-09 09:28:45] -rw-r--r--. 1 boincer umatlas      9343 Jan  9 01:44 runtime_log.err
[2026-01-09 09:28:45] -rw-------. 1 boincer umatlas       660 Jan  9 01:44 lmSNDmbB0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLhjKDmJzCVAn.diag
[2026-01-09 09:28:45] -rw-r--r--. 1 boincer umatlas      6903 Jan  9 09:28 init_data.xml
[2026-01-09 09:28:45] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 09:28 boinc_mmap_file
[2026-01-09 09:28:45] -rw-r--r--. 1 boincer umatlas        29 Jan  9 09:28 wrapper_checkpoint.txt
[2026-01-09 09:28:45] -rw-r--r--. 1 boincer umatlas     21532 Jan  9 09:28 stderr.txt
[2026-01-09 09:28:46] HITS file was successfully produced:
[2026-01-09 09:28:46] -rw-------. 1 boincer umatlas 224569884 Jan  9 01:41 shared/HITS.pool.root.1
[2026-01-09 09:28:46]  *** Contents of shared directory: ***
[2026-01-09 09:28:46] total 445604
[2026-01-09 09:28:46] -rw-r--r--. 2 boincer umatlas 224668912 Jan  8 12:40 ATLAS.root_0
[2026-01-09 09:28:46] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 12:40 start_atlas.sh
[2026-01-09 09:28:46] -rw-r--r--. 2 boincer umatlas    592399 Jan  8 12:40 input.tar.gz
[2026-01-09 09:28:46] -rw-------. 1 boincer umatlas 224569884 Jan  9 01:41 HITS.pool.root.1
[2026-01-09 09:28:46] -rw-------. 1 boincer umatlas   6440960 Jan  9 01:44 result.tar.gz
09:28:47 (2981137): run_atlas exited; CPU time 141902.022103
09:28:47 (2981137): called boinc_finish(0)

</stderr_txt>
]]>

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