Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:32:32 (29038): wrapper (7.7.26015): starting
23:32:32 (29038): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 23:32:32] Arguments: --nthreads 8
[2026-01-08 23:32:32] Threads: 8
[2026-01-08 23:32:32] Checking for CVMFS
[2026-01-08 23:32:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 23:32:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 23:32:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 23:32:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 23:32:36] 2.11.2.0 5643 34562 105300 154922 2 60 19468938 25165824 96 130560 0 7880612 99.725 8488097 3079 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-08 23:32:36] CVMFS is ok
[2026-01-08 23:32:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 23:32:36] Checking for apptainer binary...
[2026-01-08 23:32:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 23:32:36] Running /usr/bin/apptainer --version
[2026-01-08 23:32:36] apptainer version 1.3.2-1.el7
[2026-01-08 23:32:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 23:32:57] cg-vwn380.simple-grid.lan
[2026-01-08 23:32:57] apptainer works
[2026-01-08 23:32:57] Set ATHENA_PROC_NUMBER=8
[2026-01-08 23:32:57] Set ATHENA_CORE_NUMBER=8
[2026-01-08 23:32:57] Starting ATLAS job with PandaID=6962918882
[2026-01-08 23:32:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 04:53:11]  *** The last 200 lines of the pilot log: ***
[2026-01-09 04:53:11] 2026-01-09 03:52:23,146 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 04:53:11] 2026-01-09 03:52:23,148 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6962918882/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 04:53:11] 2026-01-09 03:52:23,149 | INFO     | extracted standard info from prmon json
[2026-01-09 04:53:11] 2026-01-09 03:52:23,149 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 04:53:11] 2026-01-09 03:52:23,149 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 04:53:11] 2026-01-09 03:52:23,149 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 04:53:11] 2026-01-09 03:52:23,149 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 04:53:11] 2026-01-09 03:52:23,156 | INFO     | fitting pss+swap vs Time
[2026-01-09 04:53:11] 2026-01-09 03:52:23,157 | INFO     | sum of square deviations: 8288713550.0
[2026-01-09 04:53:11] 2026-01-09 03:52:23,160 | INFO     | sum of deviations: 160510971582.99997
[2026-01-09 04:53:11] 2026-01-09 03:52:23,160 | INFO     | mean x: 1767921475.0
[2026-01-09 04:53:11] 2026-01-09 03:52:23,160 | INFO     | mean y: 2427081.143812709
[2026-01-09 04:53:11] 2026-01-09 03:52:23,160 | INFO     | intersect: -34233379467.473175
[2026-01-09 04:53:11] 2026-01-09 03:52:23,161 | INFO     | chi2: 7.492407537024359
[2026-01-09 04:53:11] 2026-01-09 03:52:23,161 | INFO     | sum of square deviations: 7879803557.5
[2026-01-09 04:53:11] 2026-01-09 03:52:23,164 | INFO     | sum of deviations: 177490043087.5
[2026-01-09 04:53:11] 2026-01-09 03:52:23,165 | INFO     | mean x: 1767921322.5
[2026-01-09 04:53:11] 2026-01-09 03:52:23,165 | INFO     | mean y: 2433311.180272109
[2026-01-09 04:53:11] 2026-01-09 03:52:23,165 | INFO     | intersect: -39819426385.71167
[2026-01-09 04:53:11] 2026-01-09 03:52:23,166 | INFO     | chi2: 6.74044024998952
[2026-01-09 04:53:11] 2026-01-09 03:52:23,166 | INFO     | current chi2=6.74044024998952 (change=10.036390617020361 %)
[2026-01-09 04:53:11] 2026-01-09 03:52:23,166 | INFO     | right removable region: 293
[2026-01-09 04:53:11] 2026-01-09 03:52:23,167 | INFO     | sum of square deviations: 7879803557.5
[2026-01-09 04:53:11] 2026-01-09 03:52:23,170 | INFO     | sum of deviations: 58454903008.500015
[2026-01-09 04:53:11] 2026-01-09 03:52:23,170 | INFO     | mean x: 1767921627.5
[2026-01-09 04:53:11] 2026-01-09 03:52:23,170 | INFO     | mean y: 2465118.397959184
[2026-01-09 04:53:11] 2026-01-09 03:52:23,170 | INFO     | intersect: -13112542953.570972
[2026-01-09 04:53:11] 2026-01-09 03:52:23,171 | INFO     | chi2: 2.8260676139814223
[2026-01-09 04:53:11] 2026-01-09 03:52:23,171 | INFO     | current chi2=2.8260676139814223 (change=62.28091437877381 %)
[2026-01-09 04:53:11] 2026-01-09 03:52:23,171 | INFO     | sum of square deviations: 7484568240.0
[2026-01-09 04:53:11] 2026-01-09 03:52:23,174 | INFO     | sum of deviations: -6043529981.999996
[2026-01-09 04:53:11] 2026-01-09 03:52:23,174 | INFO     | mean x: 1767921780.0
[2026-01-09 04:53:11] 2026-01-09 03:52:23,175 | INFO     | mean y: 2489928.0484429067
[2026-01-09 04:53:11] 2026-01-09 03:52:23,175 | INFO     | intersect: 1430025617.5701675
[2026-01-09 04:53:11] 2026-01-09 03:52:23,175 | INFO     | chi2: 0.8847302287039549
[2026-01-09 04:53:11] 2026-01-09 03:52:23,175 | INFO     | current chi2=0.8847302287039549 (change=68.69394687066497 %)
[2026-01-09 04:53:11] 2026-01-09 03:52:23,176 | INFO     | sum of square deviations: 7102775035.0
[2026-01-09 04:53:11] 2026-01-09 03:52:23,179 | INFO     | sum of deviations: -13254060663.0
[2026-01-09 04:53:11] 2026-01-09 03:52:23,179 | INFO     | mean x: 1767921932.5
[2026-01-09 04:53:11] 2026-01-09 03:52:23,179 | INFO     | mean y: 2492790.88028169
[2026-01-09 04:53:11] 2026-01-09 03:52:23,179 | INFO     | intersect: 3301505419.79472
[2026-01-09 04:53:11] 2026-01-09 03:52:23,180 | INFO     | chi2: 0.8532858685661572
[2026-01-09 04:53:11] 2026-01-09 03:52:23,180 | INFO     | current chi2=0.8532858685661572 (change=3.5541184326730537 %)
[2026-01-09 04:53:11] 2026-01-09 03:52:23,180 | INFO     | left removable region: 30
[2026-01-09 04:53:11] 2026-01-09 03:52:23,181 | INFO     | sum of square deviations: 5640782972.0
[2026-01-09 04:53:11] 2026-01-09 03:52:23,183 | INFO     | sum of deviations: 7837674731.000007
[2026-01-09 04:53:11] 2026-01-09 03:52:23,183 | INFO     | mean x: 1767922207.0
[2026-01-09 04:53:11] 2026-01-09 03:52:23,183 | INFO     | mean y: 2499617.0874524713
[2026-01-09 04:53:11] 2026-01-09 03:52:23,184 | INFO     | intersect: -2453967734.5122724
[2026-01-09 04:53:11] 2026-01-09 03:52:23,184 | INFO     | chi2: 0.0015604953288691208
[2026-01-09 04:53:11] 2026-01-09 03:52:23,184 | INFO     | current memory leak: 1.39 B/s (using 263 data points, chi2=0.00)
[2026-01-09 04:53:11] 2026-01-09 03:52:23,185 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-01-09 04:53:11] 2026-01-09 03:52:23,185 | INFO     | ..............................
[2026-01-09 04:53:11] 2026-01-09 03:52:23,185 | INFO     | . Timing measurements:
[2026-01-09 04:53:11] 2026-01-09 03:52:23,185 | INFO     | . get job = 0 s
[2026-01-09 04:53:11] 2026-01-09 03:52:23,186 | INFO     | . initial setup = 11 s
[2026-01-09 04:53:11] 2026-01-09 03:52:23,186 | INFO     | . payload setup = 152 s
[2026-01-09 04:53:11] 2026-01-09 03:52:23,186 | INFO     | . stage-in = 0 s
[2026-01-09 04:53:11] 2026-01-09 03:52:23,186 | INFO     | . payload execution = 18411 s
[2026-01-09 04:53:11] 2026-01-09 03:52:23,186 | INFO     | . stage-out = 4 s
[2026-01-09 04:53:11] 2026-01-09 03:52:23,186 | INFO     | . log creation = 2 s
[2026-01-09 04:53:11] 2026-01-09 03:52:23,186 | INFO     | ..............................
[2026-01-09 04:53:11] 2026-01-09 03:52:23,729 | INFO     | time since job start (18894s) is within the limit (174528.0s)
[2026-01-09 04:53:11] 2026-01-09 03:52:23,827 | INFO     | 
[2026-01-09 04:53:11] 2026-01-09 03:52:23,827 | INFO     | job summary report
[2026-01-09 04:53:11] 2026-01-09 03:52:23,827 | INFO     | --------------------------------------------------
[2026-01-09 04:53:11] 2026-01-09 03:52:23,827 | INFO     | PanDA job id: 6962918882
[2026-01-09 04:53:11] 2026-01-09 03:52:23,828 | INFO     | task id: 47898826
[2026-01-09 04:53:11] 2026-01-09 03:52:23,828 | INFO     | errors: (none)
[2026-01-09 04:53:11] 2026-01-09 03:52:23,828 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 04:53:11] 2026-01-09 03:52:23,828 | INFO     | pilot state: finished 
[2026-01-09 04:53:11] 2026-01-09 03:52:23,828 | INFO     | transexitcode: 0
[2026-01-09 04:53:11] 2026-01-09 03:52:23,828 | INFO     | exeerrorcode: 0
[2026-01-09 04:53:11] 2026-01-09 03:52:23,828 | INFO     | exeerrordiag: 
[2026-01-09 04:53:11] 2026-01-09 03:52:23,828 | INFO     | exitcode: 0
[2026-01-09 04:53:11] 2026-01-09 03:52:23,828 | INFO     | exitmsg: OK
[2026-01-09 04:53:11] 2026-01-09 03:52:23,828 | INFO     | cpuconsumptiontime: 82782 s
[2026-01-09 04:53:11] 2026-01-09 03:52:23,829 | INFO     | nevents: 400
[2026-01-09 04:53:11] 2026-01-09 03:52:23,829 | INFO     | neventsw: 0
[2026-01-09 04:53:11] 2026-01-09 03:52:23,829 | INFO     | pid: 6905
[2026-01-09 04:53:11] 2026-01-09 03:52:23,829 | INFO     | pgrp: 6905
[2026-01-09 04:53:11] 2026-01-09 03:52:23,829 | INFO     | corecount: 8
[2026-01-09 04:53:11] 2026-01-09 03:52:23,829 | INFO     | event service: False
[2026-01-09 04:53:11] 2026-01-09 03:52:23,829 | INFO     | sizes: {0: 2283740, 1: 2283995, 12: 2283995, 23: 2284023, 34: 2284051, 44: 2284079, 55: 2284235, 66: 2284263, 77: 2284291, 87: 2284347, 98: 2284375, 106: 2284945, 
[2026-01-09 04:53:11] 2026-01-09 03:52:23,829 | INFO     | --------------------------------------------------
[2026-01-09 04:53:11] 2026-01-09 03:52:23,829 | INFO     | 
[2026-01-09 04:53:11] 2026-01-09 03:52:23,830 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-01-09 04:53:11] 2026-01-09 03:52:24,483 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,484 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,484 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,484 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,484 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,484 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,484 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,484 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,484 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,484 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,485 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,485 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,485 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,485 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 04:53:11] 2026-01-09 03:52:24,485 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,485 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 04:53:11] 2026-01-09 03:52:24,486 | INFO     | job 6962918882 has completed (purged errors)
[2026-01-09 04:53:11] 2026-01-09 03:52:24,486 | INFO     | overall cleanup function is called
[2026-01-09 04:53:11] 2026-01-09 03:52:25,494 | INFO     | --- collectZombieJob: --- 10, [6905]
[2026-01-09 04:53:11] 2026-01-09 03:52:25,494 | INFO     | zombie collector waiting for pid 6905
[2026-01-09 04:53:11] 2026-01-09 03:52:25,494 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 04:53:11] 2026-01-09 03:52:25,495 | INFO     | collected zombie processes
[2026-01-09 04:53:11] 2026-01-09 03:52:25,495 | INFO     | will attempt to kill all subprocesses of pid=6905
[2026-01-09 04:53:11] 2026-01-09 03:52:25,582 | INFO     | process IDs to be killed: [6905] (in reverse order)
[2026-01-09 04:53:11] 2026-01-09 03:52:26,092 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 04:53:11] 2026-01-09 03:52:26,092 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 04:53:11] 2026-01-09 03:52:26,094 | INFO     | did not find any defunct processes belonging to 6905
[2026-01-09 04:53:11] 2026-01-09 03:52:26,096 | INFO     | did not find any defunct processes belonging to 6905
[2026-01-09 04:53:11] 2026-01-09 03:52:26,096 | INFO     | ready for new job
[2026-01-09 04:53:11] 2026-01-09 03:52:26,096 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 04:53:11] 2026-01-09 03:52:26,098 | INFO     | ***************************************
[2026-01-09 04:53:11] 2026-01-09 03:52:26,099 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 04:53:11] 2026-01-09 03:52:26,099 | INFO     | ***************************************
[2026-01-09 04:53:11] 2026-01-09 03:52:26,099 | INFO     | 
[2026-01-09 04:53:11] 2026-01-09 03:52:26,099 | INFO     | pilot is running in a VM
[2026-01-09 04:53:11] 2026-01-09 03:52:26,100 | INFO     | architecture information:
[2026-01-09 04:53:11] 2026-01-09 03:52:26,107 | INFO     | executing command: cat /etc/os-release
[2026-01-09 04:53:11] 2026-01-09 03:52:26,286 | INFO     | cat /etc/os-release:
[2026-01-09 04:53:11] NAME="CentOS Linux"
[2026-01-09 04:53:11] VERSION="7 (Core)"
[2026-01-09 04:53:11] ID="centos"
[2026-01-09 04:53:11] ID_LIKE="rhel fedora"
[2026-01-09 04:53:11] VERSION_ID="7"
[2026-01-09 04:53:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 04:53:11] ANSI_COLOR="0;31"
[2026-01-09 04:53:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 04:53:11] HOME_URL="https://www.centos.org/"
[2026-01-09 04:53:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 04:53:11] 
[2026-01-09 04:53:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 04:53:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 04:53:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 04:53:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 04:53:11] 
[2026-01-09 04:53:11] 2026-01-09 03:52:26,287 | INFO     | ***************************************
[2026-01-09 04:53:11] 2026-01-09 03:52:26,790 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-01-09 04:53:11] 2026-01-09 03:52:27,061 | INFO     | sufficient remaining disk space (497473814528 B)
[2026-01-09 04:53:11] 2026-01-09 03:52:27,061 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 04:53:11] 2026-01-09 03:52:27,061 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 04:53:11] 2026-01-09 03:52:27,061 | INFO     | update_server=False
[2026-01-09 04:53:11] 2026-01-09 03:52:27,061 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 04:53:11] 2026-01-09 03:52:27,063 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 04:53:11] 2026-01-09 03:52:27,063 | INFO     | aborting loop
[2026-01-09 04:53:11] 2026-01-09 03:52:27,064 | INFO     | all job control threads have been joined
[2026-01-09 04:53:11] 2026-01-09 03:52:27,230 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 04:53:11] 2026-01-09 03:52:27,480 | INFO     | all data control threads have been joined
[2026-01-09 04:53:11] 2026-01-09 03:52:28,068 | INFO     | [job] retrieve thread has finished
[2026-01-09 04:53:11] 2026-01-09 03:52:28,069 | INFO     | [job] job monitor thread has finished
[2026-01-09 04:53:11] 2026-01-09 03:52:28,070 | INFO     | [job] control thread has finished
[2026-01-09 04:53:11] 2026-01-09 03:52:28,085 | INFO     | all payload control threads have been joined
[2026-01-09 04:53:11] 2026-01-09 03:52:28,155 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 04:53:11] 2026-01-09 03:52:28,234 | INFO     | [payload] validate_post thread has finished
[2026-01-09 04:53:11] 2026-01-09 03:52:28,260 | INFO     | [data] copytool_in thread has finished
[2026-01-09 04:53:11] 2026-01-09 03:52:28,339 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 04:53:11] 2026-01-09 03:52:28,364 | INFO     | [job] validate thread has finished
[2026-01-09 04:53:11] 2026-01-09 03:52:28,486 | INFO     | [data] control thread has finished
[2026-01-09 04:53:11] 2026-01-09 03:52:28,539 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 04:53:11] 2026-01-09 03:52:29,022 | INFO     | [payload] failed_post thread has finished
[2026-01-09 04:53:11] 2026-01-09 03:52:29,091 | INFO     | [payload] control thread has finished
[2026-01-09 04:53:11] 2026-01-09 03:52:29,237 | INFO     | [data] copytool_out thread has finished
[2026-01-09 04:53:11] 2026-01-09 03:52:29,345 | INFO     | [job] queue monitor thread has finished
[2026-01-09 04:53:11] 2026-01-09 03:52:29,414 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 04:53:11] 2026-01-09 03:52:30,257 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 04:53:11] 2026-01-09 03:52:34,265 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 04:53:11] 2026-01-09 03:52:37,274 | INFO     | job.realtimelogging is not enabled
[2026-01-09 04:53:11] 2026-01-09 03:52:38,280 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 04:53:11] 2026-01-09 03:52:56,863 | INFO     | PID=321 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-01-09 04:53:11] 2026-01-09 03:52:56,863 | INFO     | .. there are 2 such processes running
[2026-01-09 04:53:11] 2026-01-09 03:52:56,863 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 04:53:11] 2026-01-09 03:52:56,863 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 04:53:11] 2026-01-09 03:52:56,863 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 04:53:11] 2026-01-09 03:53:00,538 | INFO     | [monitor] cgroup control has ended
[2026-01-09 04:53:11] 2026-01-09 03:53:00,887 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140414418122560)>', '<ExcThread(monitor, started 140414107490048)>']
[2026-01-09 04:53:11] 2026-01-09 03:53:00,891 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 04:53:11] 2026-01-09 03:53:00,891 | INFO     | [monitor] control thread has ended
[2026-01-09 04:53:11] 2026-01-09 03:53:05,913 | INFO     | all workflow threads have been joined
[2026-01-09 04:53:11] 2026-01-09 03:53:05,913 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 04:53:11] 2026-01-09 03:53:05,914 | INFO     | traces error code: 0
[2026-01-09 04:53:11] 2026-01-09 03:53:05,914 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 04:53:11] 2026-01-09 03:53:06,277 [wrapper] ==== pilot stdout END ====
[2026-01-09 04:53:11] 2026-01-09 03:53:06,359 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 04:53:11] 2026-01-09 03:53:06,452 [wrapper] pilotpid: 321
[2026-01-09 04:53:11] 2026-01-09 03:53:06,514 [wrapper] Pilot exit status: 0
[2026-01-09 04:53:11] 2026-01-09 03:53:07,043 [wrapper] pandaids: 6962918882
[2026-01-09 04:53:11] 2026-01-09 03:53:08,037 [wrapper] cleanup supervisor_pilot 21377 322
[2026-01-09 04:53:11] 2026-01-09 03:53:08,151 [wrapper] Test setup, not cleaning
[2026-01-09 04:53:11] 2026-01-09 03:53:08,261 [wrapper] apfmon messages muted
[2026-01-09 04:53:11] 2026-01-09 03:53:08,376 [wrapper] ==== wrapper stdout END ====
[2026-01-09 04:53:11] 2026-01-09 03:53:08,478 [wrapper] ==== wrapper stderr END ====
[2026-01-09 04:53:11]  *** Error codes and diagnostics ***
[2026-01-09 04:53:11]     "exeErrorCode": 0,
[2026-01-09 04:53:11]     "exeErrorDiag": "",
[2026-01-09 04:53:11]     "pilotErrorCode": 0,
[2026-01-09 04:53:11]     "pilotErrorDiag": "",
[2026-01-09 04:53:11]  *** Listing of results directory ***
[2026-01-09 04:53:11] total 445284
[2026-01-09 04:53:11] -rwx------. 1 boinc boinc     36322 Jan  8 09:04 runpilot2-wrapper.sh
[2026-01-09 04:53:11] -rw-r--r--. 1 boinc boinc    579449 Jan  8 09:09 pilot3.tar.gz
[2026-01-09 04:53:11] -rw-r--r--. 1 boinc boinc      5112 Jan  8 09:09 queuedata.json
[2026-01-09 04:53:11] -rw-r--r--. 1 boinc boinc       100 Jan  8 23:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 04:53:11] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 23:32 run_atlas
[2026-01-09 04:53:11] -rw-r--r--. 1 boinc boinc       105 Jan  8 23:32 job.xml
[2026-01-09 04:53:11] -rw-r--r--. 1 boinc boinc      6390 Jan  8 23:32 init_data.xml
[2026-01-09 04:53:11] -rw-r--r--. 2 boinc boinc 226779200 Jan  8 23:32 EVNT.47898824._000834.pool.root.1
[2026-01-09 04:53:11] -rw-r--r--. 2 boinc boinc     15847 Jan  8 23:32 start_atlas.sh
[2026-01-09 04:53:11] drwxrwx--x. 2 boinc boinc        68 Jan  8 23:32 shared
[2026-01-09 04:53:11] -rw-r--r--. 2 boinc boinc    592398 Jan  8 23:32 input.tar.gz
[2026-01-09 04:53:11] -rw-r--r--. 1 boinc boinc         0 Jan  8 23:32 boinc_lockfile
[2026-01-09 04:53:11] -rw-r--r--. 1 boinc boinc      2518 Jan  8 23:32 pandaJob.out
[2026-01-09 04:53:11] -rw-------. 1 boinc boinc    989837 Jan  8 23:37 agis_schedconf.cvmfs.json
[2026-01-09 04:53:11] drwx------. 5 boinc boinc      4096 Jan  8 23:37 pilot3
[2026-01-09 04:53:11] -rw-------. 1 boinc boinc 219209145 Jan  9 04:48 HITS.47898826._020902.pool.root.1
[2026-01-09 04:53:11] -rw-r--r--. 1 boinc boinc       531 Jan  9 04:49 boinc_task_state.xml
[2026-01-09 04:53:11] -rw-------. 1 boinc boinc      1020 Jan  9 04:50 memory_monitor_summary.json
[2026-01-09 04:53:11] -rw-------. 1 boinc boinc   1516240 Jan  9 04:50 agis_ddmendpoints.agis.ALL.json
[2026-01-09 04:53:11] -rw-------. 1 boinc boinc    506555 Jan  9 04:50 log.47898826._020902.job.log.tgz.1
[2026-01-09 04:53:11] -rw-------. 1 boinc boinc        95 Jan  9 04:52 pilot_heartbeat.json
[2026-01-09 04:53:11] -rw-------. 1 boinc boinc      7783 Jan  9 04:52 heartbeat.json
[2026-01-09 04:53:11] -rw-r--r--. 1 boinc boinc      8192 Jan  9 04:52 boinc_mmap_file
[2026-01-09 04:53:11] -rw-r--r--. 1 boinc boinc        28 Jan  9 04:52 wrapper_checkpoint.txt
[2026-01-09 04:53:11] -rw-------. 1 boinc boinc      4954 Jan  9 04:53 pilotlog.txt
[2026-01-09 04:53:11] -rw-------. 1 boinc boinc   2534897 Jan  9 04:53 log.47898826._020902.job.log.1
[2026-01-09 04:53:11] -rw-------. 1 boinc boinc       357 Jan  9 04:53 output.list
[2026-01-09 04:53:11] -rw-r--r--. 1 boinc boinc       620 Jan  9 04:53 runtime_log
[2026-01-09 04:53:11] -rw-------. 1 boinc boinc   3061760 Jan  9 04:53 result.tar.gz
[2026-01-09 04:53:11] -rw-------. 1 boinc boinc       657 Jan  9 04:53 WyiLDmmB0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmFaeKDm7l8E1n.diag
[2026-01-09 04:53:11] -rw-r--r--. 1 boinc boinc      8817 Jan  9 04:53 runtime_log.err
[2026-01-09 04:53:11] -rw-r--r--. 1 boinc boinc     20758 Jan  9 04:53 stderr.txt
[2026-01-09 04:53:11] HITS file was successfully produced:
[2026-01-09 04:53:11] -rw-------. 1 boinc boinc 219209145 Jan  9 04:48 shared/HITS.pool.root.1
[2026-01-09 04:53:11]  *** Contents of shared directory: ***
[2026-01-09 04:53:11] total 439128
[2026-01-09 04:53:11] -rw-r--r--. 2 boinc boinc 226779200 Jan  8 23:32 ATLAS.root_0
[2026-01-09 04:53:11] -rw-r--r--. 2 boinc boinc     15847 Jan  8 23:32 start_atlas.sh
[2026-01-09 04:53:11] -rw-r--r--. 2 boinc boinc    592398 Jan  8 23:32 input.tar.gz
[2026-01-09 04:53:11] -rw-------. 1 boinc boinc 219209145 Jan  9 04:48 HITS.pool.root.1
[2026-01-09 04:53:11] -rw-------. 1 boinc boinc   3061760 Jan  9 04:53 result.tar.gz
04:53:13 (29038): run_atlas exited; CPU time 82967.577491
04:53:13 (29038): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN