Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
14:13:56 (2819893): wrapper (7.7.26015): starting
14:13:56 (2819893): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 14:13:56] Arguments: --nthreads 12
[2026-01-08 14:13:56] Threads: 12
[2026-01-08 14:13:56] Checking for CVMFS
[2026-01-08 14:13:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 14:13:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 14:13:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 14:13:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 14:13:56] 2.13.0.0 2697806 306 70784 154908 2 57 5024695 6144001 0 130560 0 358254 99.991 19160 883 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-08 14:13:56] CVMFS is ok
[2026-01-08 14:13:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 14:13:56] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-08 14:13:56] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-08 14:13:56] Further information can be found at the LHC@home message board.
[2026-01-08 14:13:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 14:13:56] Checking for apptainer binary...
[2026-01-08 14:13:56] apptainer is not installed, using version from CVMFS
[2026-01-08 14:13:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 14:13:57] Debian-bookworm-latest-amd64-base
[2026-01-08 14:13:57] apptainer works
[2026-01-08 14:13:57] Set ATHENA_PROC_NUMBER=12
[2026-01-08 14:13:57] Set ATHENA_CORE_NUMBER=12
[2026-01-08 14:13:57] Starting ATLAS job with PandaID=6962914735
[2026-01-08 14:13:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 15:15:15]  *** The last 200 lines of the pilot log: ***
[2026-01-08 15:15:15]  protocol_id=None
[2026-01-08 15:15:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-08 15:15:15]  replicas=None
[2026-01-08 15:15:15]  scope=mc23_13p6TeV
[2026-01-08 15:15:15]  status=None
[2026-01-08 15:15:15]  status_code=0
[2026-01-08 15:15:15]  storage_token=
[2026-01-08 15:15:15]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-6962914735/log.47898826._017795.job.log.tgz.1
[2026-01-08 15:15:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/65/log.47898826._017795.job.log.tgz.1
[2026-01-08 15:15:15]  workdir=None
[2026-01-08 15:15:15] ]
[2026-01-08 15:15:15] 2026-01-08 14:14:31,797 | INFO     | transferring file log.47898826._017795.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6962914735/log.47898826._017795.job.log.tgz.1 to /var/lib/boinc
[2026-01-08 15:15:15] 2026-01-08 14:14:31,797 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6962914735/log.47898826._017795.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.478988
[2026-01-08 15:15:15] 2026-01-08 14:14:31,822 | INFO     | adding to output.list: log.47898826._017795.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/65/log.47898826._017795.job.log.tg
[2026-01-08 15:15:15] 2026-01-08 14:14:31,822 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-08 15:15:15] 2026-01-08 14:14:31,822 | INFO     | summary of transferred files:
[2026-01-08 15:15:15] 2026-01-08 14:14:31,822 | INFO     |  -- lfn=log.47898826._017795.job.log.tgz.1, status_code=0, status=transferred
[2026-01-08 15:15:15] 2026-01-08 14:14:31,822 | INFO     | stage-out finished correctly
[2026-01-08 15:15:15] 2026-01-08 14:14:32,266 | INFO     | time since job start (3629s) is within the limit (174528.0s)
[2026-01-08 15:15:15] 2026-01-08 14:14:33,717 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-08 15:15:15] 2026-01-08 14:14:34,271 | INFO     | time since job start (3631s) is within the limit (174528.0s)
[2026-01-08 15:15:15] 2026-01-08 14:14:34,295 | INFO     | job 6962914735 has state=finished
[2026-01-08 15:15:15] 2026-01-08 14:14:34,295 | INFO     | preparing for final server update for job 6962914735 in state='finished'
[2026-01-08 15:15:15] 2026-01-08 14:14:34,296 | INFO     | this job has now completed (state=finished)
[2026-01-08 15:15:15] 2026-01-08 14:14:34,296 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-08 15:15:15] 2026-01-08 14:14:34,296 | INFO     | log transfer has been attempted: DONE
[2026-01-08 15:15:15] 2026-01-08 14:14:34,296 | INFO     | job 6962914735 has finished - writing final server update
[2026-01-08 15:15:15] 2026-01-08 14:14:34,296 | INFO     | total number of processed events: 400 (read)
[2026-01-08 15:15:15] 2026-01-08 14:14:34,297 | INFO     | executing command: lscpu
[2026-01-08 15:15:15] 2026-01-08 14:14:34,317 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-08 15:15:15] 2026-01-08 14:14:35,526 | WARNING  | process 2830456 can no longer be monitored (due to stat problems) - aborting
[2026-01-08 15:15:15] 2026-01-08 14:14:35,526 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6962914735/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 15:15:15] 2026-01-08 14:14:35,564 | INFO     | number of running child processes to parent process 2830456: 1
[2026-01-08 15:15:15] 2026-01-08 14:14:35,564 | INFO     | maximum number of monitored processes: 6
[2026-01-08 15:15:15] 2026-01-08 14:14:36,276 | INFO     | time since job start (3633s) is within the limit (174528.0s)
[2026-01-08 15:15:15] 2026-01-08 14:14:38,065 | INFO     | monitor loop #271: job 0:6962914735 is in state 'finished'
[2026-01-08 15:15:15] 2026-01-08 14:14:38,066 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 15:15:15] 2026-01-08 14:14:38,278 | INFO     | time since job start (3635s) is within the limit (174528.0s)
[2026-01-08 15:15:15] 2026-01-08 14:14:39,324 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 15:15:15] 2026-01-08 14:14:39,325 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3822.8986250000003
[2026-01-08 15:15:15] 2026-01-08 14:14:39,327 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6962914735/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 15:15:15] 2026-01-08 14:14:39,327 | INFO     | extracted standard info from prmon json
[2026-01-08 15:15:15] 2026-01-08 14:14:39,327 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 15:15:15] 2026-01-08 14:14:39,327 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 15:15:15] 2026-01-08 14:14:39,327 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 15:15:15] 2026-01-08 14:14:39,327 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 15:15:15] 2026-01-08 14:14:39,328 | INFO     | fitting pss+swap vs Time
[2026-01-08 15:15:15] 2026-01-08 14:14:39,328 | INFO     | sum of square deviations: 46147842.0
[2026-01-08 15:15:15] 2026-01-08 14:14:39,328 | INFO     | sum of deviations: 925944986.0
[2026-01-08 15:15:15] 2026-01-08 14:14:39,328 | INFO     | mean x: 1767879953.0
[2026-01-08 15:15:15] 2026-01-08 14:14:39,328 | INFO     | mean y: 2842081.886792453
[2026-01-08 15:15:15] 2026-01-08 14:14:39,328 | INFO     | intersect: -35469230010.46079
[2026-01-08 15:15:15] 2026-01-08 14:14:39,328 | INFO     | chi2: 0.00028076371748513934
[2026-01-08 15:15:15] 2026-01-08 14:14:39,328 | INFO     | current memory leak: 20.06 B/s (using 53 data points, chi2=0.00)
[2026-01-08 15:15:15] 2026-01-08 14:14:39,328 | INFO     | could have reported an average CPU frequency of 3864 MHz (5 samples)
[2026-01-08 15:15:15] 2026-01-08 14:14:39,328 | INFO     | ..............................
[2026-01-08 15:15:15] 2026-01-08 14:14:39,328 | INFO     | . Timing measurements:
[2026-01-08 15:15:15] 2026-01-08 14:14:39,328 | INFO     | . get job = 0 s
[2026-01-08 15:15:15] 2026-01-08 14:14:39,328 | INFO     | . initial setup = 1 s
[2026-01-08 15:15:15] 2026-01-08 14:14:39,328 | INFO     | . payload setup = 2 s
[2026-01-08 15:15:15] 2026-01-08 14:14:39,328 | INFO     | . stage-in = 0 s
[2026-01-08 15:15:15] 2026-01-08 14:14:39,328 | INFO     | . payload execution = 3609 s
[2026-01-08 15:15:15] 2026-01-08 14:14:39,329 | INFO     | . stage-out = 0 s
[2026-01-08 15:15:15] 2026-01-08 14:14:39,329 | INFO     | . log creation = 0 s
[2026-01-08 15:15:15] 2026-01-08 14:14:39,329 | INFO     | ..............................
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | 
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | job summary report
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | --------------------------------------------------
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | PanDA job id: 6962914735
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | task id: 47898826
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | errors: (none)
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | pilot state: finished 
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | transexitcode: 0
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | exeerrorcode: 0
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | exeerrordiag: 
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | exitcode: 0
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | exitmsg: OK
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | cpuconsumptiontime: 39592 s
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | nevents: 400
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | neventsw: 0
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | pid: 2830456
[2026-01-08 15:15:15] 2026-01-08 14:14:39,370 | INFO     | pgrp: 2830456
[2026-01-08 15:15:15] 2026-01-08 14:14:39,371 | INFO     | corecount: 12
[2026-01-08 15:15:15] 2026-01-08 14:14:39,371 | INFO     | event service: False
[2026-01-08 15:15:15] 2026-01-08 14:14:39,371 | INFO     | sizes: {0: 2283975, 2: 2284237, 11: 2284265, 3615: 2319040, 3617: 2319040, 3623: 2319266}
[2026-01-08 15:15:15] 2026-01-08 14:14:39,371 | INFO     | --------------------------------------------------
[2026-01-08 15:15:15] 2026-01-08 14:14:39,371 | INFO     | 
[2026-01-08 15:15:15] 2026-01-08 14:14:39,371 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-01-08 15:15:15] 2026-01-08 14:14:39,382 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,382 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,382 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,382 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,382 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,382 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,382 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,382 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,382 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,382 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,382 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,382 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,382 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,383 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,383 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,383 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,383 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,383 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 15:15:15] 2026-01-08 14:14:39,383 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,383 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 15:15:15] 2026-01-08 14:14:39,383 | INFO     | job 6962914735 has completed (purged errors)
[2026-01-08 15:15:15] 2026-01-08 14:14:39,383 | INFO     | overall cleanup function is called
[2026-01-08 15:15:15] 2026-01-08 14:14:40,390 | INFO     | --- collectZombieJob: --- 10, [2830456]
[2026-01-08 15:15:15] 2026-01-08 14:14:40,390 | INFO     | zombie collector waiting for pid 2830456
[2026-01-08 15:15:15] 2026-01-08 14:14:40,390 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 15:15:15] 2026-01-08 14:14:40,390 | INFO     | collected zombie processes
[2026-01-08 15:15:15] 2026-01-08 14:14:40,390 | INFO     | will attempt to kill all subprocesses of pid=2830456
[2026-01-08 15:15:15] 2026-01-08 14:14:40,454 | INFO     | process IDs to be killed: [2830456] (in reverse order)
[2026-01-08 15:15:15] 2026-01-08 14:14:40,481 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 15:15:15] 2026-01-08 14:14:40,481 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 15:15:15] 2026-01-08 14:14:40,483 | INFO     | did not find any defunct processes belonging to 2830456
[2026-01-08 15:15:15] 2026-01-08 14:14:40,484 | INFO     | did not find any defunct processes belonging to 2830456
[2026-01-08 15:15:15] 2026-01-08 14:14:40,485 | INFO     | ready for new job
[2026-01-08 15:15:15] 2026-01-08 14:14:40,485 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 15:15:15] 2026-01-08 14:14:40,486 | INFO     | ***************************************
[2026-01-08 15:15:15] 2026-01-08 14:14:40,486 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 15:15:15] 2026-01-08 14:14:40,486 | INFO     | ***************************************
[2026-01-08 15:15:15] 2026-01-08 14:14:40,486 | INFO     | 
[2026-01-08 15:15:15] 2026-01-08 14:14:40,487 | INFO     | architecture information:
[2026-01-08 15:15:15] 2026-01-08 14:14:40,487 | INFO     | executing command: cat /etc/os-release
[2026-01-08 15:15:15] 2026-01-08 14:14:40,497 | INFO     | cat /etc/os-release:
[2026-01-08 15:15:15] NAME="CentOS Linux"
[2026-01-08 15:15:15] VERSION="7 (Core)"
[2026-01-08 15:15:15] ID="centos"
[2026-01-08 15:15:15] ID_LIKE="rhel fedora"
[2026-01-08 15:15:15] VERSION_ID="7"
[2026-01-08 15:15:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 15:15:15] ANSI_COLOR="0;31"
[2026-01-08 15:15:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 15:15:15] HOME_URL="https://www.centos.org/"
[2026-01-08 15:15:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 15:15:15] 
[2026-01-08 15:15:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 15:15:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 15:15:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 15:15:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 15:15:15] 
[2026-01-08 15:15:15] 2026-01-08 14:14:40,498 | INFO     | ***************************************
[2026-01-08 15:15:15] 2026-01-08 14:14:41,000 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-01-08 15:15:15] 2026-01-08 14:14:41,017 | INFO     | sufficient remaining disk space (710682869760 B)
[2026-01-08 15:15:15] 2026-01-08 14:14:41,018 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 15:15:15] 2026-01-08 14:14:41,018 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 15:15:15] 2026-01-08 14:14:41,018 | INFO     | update_server=False
[2026-01-08 15:15:15] 2026-01-08 14:14:41,018 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 15:15:15] 2026-01-08 14:14:41,018 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 15:15:15] 2026-01-08 14:14:41,403 | INFO     | all data control threads have been joined
[2026-01-08 15:15:15] 2026-01-08 14:14:41,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 15:15:15] 2026-01-08 14:14:41,574 | INFO     | aborting loop
[2026-01-08 15:15:15] 2026-01-08 14:14:41,586 | INFO     | all payload control threads have been joined
[2026-01-08 15:15:15] 2026-01-08 14:14:41,876 | INFO     | all job control threads have been joined
[2026-01-08 15:15:15] 2026-01-08 14:14:42,023 | INFO     | [job] retrieve thread has finished
[2026-01-08 15:15:15] 2026-01-08 14:14:42,023 | INFO     | [job] queue monitor thread has finished
[2026-01-08 15:15:15] 2026-01-08 14:14:42,293 | INFO     | [data] copytool_in thread has finished
[2026-01-08 15:15:15] 2026-01-08 14:14:42,375 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 15:15:15] 2026-01-08 14:14:42,407 | INFO     | [data] control thread has finished
[2026-01-08 15:15:15] 2026-01-08 14:14:42,579 | INFO     | [job] job monitor thread has finished
[2026-01-08 15:15:15] 2026-01-08 14:14:42,589 | INFO     | [payload] control thread has finished
[2026-01-08 15:15:15] 2026-01-08 14:14:42,592 | INFO     | [payload] failed_post thread has finished
[2026-01-08 15:15:15] 2026-01-08 14:14:42,873 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 15:15:15] 2026-01-08 14:14:42,881 | INFO     | [job] control thread has finished
[2026-01-08 15:15:15] 2026-01-08 14:14:42,912 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 15:15:15] 2026-01-08 14:14:42,948 | INFO     | [job] validate thread has finished
[2026-01-08 15:15:15] 2026-01-08 14:14:42,949 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 15:15:15] 2026-01-08 14:14:43,618 | INFO     | [payload] validate_post thread has finished
[2026-01-08 15:15:15] 2026-01-08 14:14:44,293 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 15:15:15] 2026-01-08 14:14:44,381 | INFO     | [data] copytool_out thread has finished
[2026-01-08 15:15:15] 2026-01-08 14:14:48,299 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 15:15:15] 2026-01-08 14:14:51,750 | INFO     | job.realtimelogging is not enabled
[2026-01-08 15:15:15] 2026-01-08 14:14:52,753 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 15:15:15] 2026-01-08 14:15:08,662 | INFO     | [monitor] cgroup control has ended
[2026-01-08 15:15:15] 2026-01-08 14:15:10,622 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140054692878144)>', '<ExcThread(monitor, started 140054160721664)>']
[2026-01-08 15:15:15] 2026-01-08 14:15:11,429 | INFO     | PID=2823682 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 15:15:15] 2026-01-08 14:15:11,443 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 15:15:15] 2026-01-08 14:15:11,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 15:15:15] 2026-01-08 14:15:11,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 15:15:15] 2026-01-08 14:15:11,443 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 15:15:15] 2026-01-08 14:15:11,443 | INFO     | [monitor] control thread has ended
[2026-01-08 15:15:15] 2026-01-08 14:15:15,645 | INFO     | all workflow threads have been joined
[2026-01-08 15:15:15] 2026-01-08 14:15:15,646 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 15:15:15] 2026-01-08 14:15:15,646 | INFO     | traces error code: 0
[2026-01-08 15:15:15] 2026-01-08 14:15:15,646 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 15:15:15] 2026-01-08 14:15:15,717 [wrapper] ==== pilot stdout END ====
[2026-01-08 15:15:15] 2026-01-08 14:15:15,718 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 15:15:15] 2026-01-08 14:15:15,720 [wrapper] pilotpid: 2823682
[2026-01-08 15:15:15] 2026-01-08 14:15:15,721 [wrapper] Pilot exit status: 0
[2026-01-08 15:15:15] 2026-01-08 14:15:15,726 [wrapper] pandaids: 6962914735
[2026-01-08 15:15:15] 2026-01-08 14:15:15,739 [wrapper] cleanup supervisor_pilot 2840910 2823683
[2026-01-08 15:15:15] 2026-01-08 14:15:15,740 [wrapper] Test setup, not cleaning
[2026-01-08 15:15:15] 2026-01-08 14:15:15,741 [wrapper] apfmon messages muted
[2026-01-08 15:15:15] 2026-01-08 14:15:15,743 [wrapper] ==== wrapper stdout END ====
[2026-01-08 15:15:15] 2026-01-08 14:15:15,744 [wrapper] ==== wrapper stderr END ====
[2026-01-08 15:15:15]  *** Error codes and diagnostics ***
[2026-01-08 15:15:15]     "exeErrorCode": 0,
[2026-01-08 15:15:15]     "exeErrorDiag": "",
[2026-01-08 15:15:15]     "pilotErrorCode": 0,
[2026-01-08 15:15:15]     "pilotErrorDiag": "",
[2026-01-08 15:15:15]  *** Listing of results directory ***
[2026-01-08 15:15:15] total 440816
[2026-01-08 15:15:15] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-08 15:15:15] -rwx------ 1 boinc boinc     36322 Jan  8 09:01 runpilot2-wrapper.sh
[2026-01-08 15:15:15] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:01 queuedata.json
[2026-01-08 15:15:15] -rw-r--r-- 1 boinc boinc       100 Jan  8 14:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 15:15:15] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 14:13 run_atlas
[2026-01-08 15:15:15] -rw-r--r-- 1 boinc boinc       105 Jan  8 14:13 job.xml
[2026-01-08 15:15:15] -rw-r--r-- 2 boinc boinc     15847 Jan  8 14:13 start_atlas.sh
[2026-01-08 15:15:15] drwxrwx--x 2 boinc boinc      4096 Jan  8 14:13 shared
[2026-01-08 15:15:15] -rw-r--r-- 2 boinc boinc    592402 Jan  8 14:13 input.tar.gz
[2026-01-08 15:15:15] -rw-r--r-- 1 boinc boinc      6726 Jan  8 14:13 init_data.xml
[2026-01-08 15:15:15] -rw-r--r-- 2 boinc boinc 225083259 Jan  8 14:13 EVNT.47898824._000384.pool.root.1
[2026-01-08 15:15:15] -rw-r--r-- 1 boinc boinc         0 Jan  8 14:13 boinc_lockfile
[2026-01-08 15:15:15] -rw-r--r-- 1 boinc boinc      2518 Jan  8 14:13 pandaJob.out
[2026-01-08 15:15:15] -rw------- 1 boinc boinc    989843 Jan  8 14:14 agis_schedconf.cvmfs.json
[2026-01-08 15:15:15] -rw------- 1 boinc boinc   1516240 Jan  8 14:14 agis_ddmendpoints.agis.ALL.json
[2026-01-08 15:15:15] drwx------ 5 boinc boinc      4096 Jan  8 14:14 pilot3
[2026-01-08 15:15:15] -rw------- 1 boinc boinc 220555641 Jan  8 15:14 HITS.47898826._017795.pool.root.1
[2026-01-08 15:15:15] -rw-r--r-- 1 boinc boinc       530 Jan  8 15:14 boinc_task_state.xml
[2026-01-08 15:15:15] -rw------- 1 boinc boinc      1011 Jan  8 15:14 memory_monitor_summary.json
[2026-01-08 15:15:15] -rw------- 1 boinc boinc    382410 Jan  8 15:14 log.47898826._017795.job.log.tgz.1
[2026-01-08 15:15:15] -rw------- 1 boinc boinc      7773 Jan  8 15:14 heartbeat.json
[2026-01-08 15:15:15] -rw-r--r-- 1 boinc boinc        27 Jan  8 15:15 wrapper_checkpoint.txt
[2026-01-08 15:15:15] -rw------- 1 boinc boinc        95 Jan  8 15:15 pilot_heartbeat.json
[2026-01-08 15:15:15] -rw-r--r-- 1 boinc boinc      8192 Jan  8 15:15 boinc_mmap_file
[2026-01-08 15:15:15] -rw------- 1 boinc boinc      4828 Jan  8 15:15 pilotlog.txt
[2026-01-08 15:15:15] -rw------- 1 boinc boinc    539671 Jan  8 15:15 log.47898826._017795.job.log.1
[2026-01-08 15:15:15] -rw------- 1 boinc boinc       357 Jan  8 15:15 output.list
[2026-01-08 15:15:15] -rw-r--r-- 1 boinc boinc       620 Jan  8 15:15 runtime_log
[2026-01-08 15:15:15] -rw------- 1 boinc boinc    942080 Jan  8 15:15 result.tar.gz
[2026-01-08 15:15:15] -rw------- 1 boinc boinc       706 Jan  8 15:15 zlqMDmI8zx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpQjKDmDiBXBn.diag
[2026-01-08 15:15:15] -rw-r--r-- 1 boinc boinc      9132 Jan  8 15:15 runtime_log.err
[2026-01-08 15:15:15] -rw-r--r-- 1 boinc boinc     21974 Jan  8 15:15 stderr.txt
[2026-01-08 15:15:15] HITS file was successfully produced:
[2026-01-08 15:15:15] -rw------- 1 boinc boinc 220555641 Jan  8 15:14 shared/HITS.pool.root.1
[2026-01-08 15:15:15]  *** Contents of shared directory: ***
[2026-01-08 15:15:15] total 436720
[2026-01-08 15:15:15] -rw-r--r-- 2 boinc boinc     15847 Jan  8 14:13 start_atlas.sh
[2026-01-08 15:15:15] -rw-r--r-- 2 boinc boinc    592402 Jan  8 14:13 input.tar.gz
[2026-01-08 15:15:15] -rw-r--r-- 2 boinc boinc 225083259 Jan  8 14:13 ATLAS.root_0
[2026-01-08 15:15:15] -rw------- 1 boinc boinc 220555641 Jan  8 15:14 HITS.pool.root.1
[2026-01-08 15:15:15] -rw------- 1 boinc boinc    942080 Jan  8 15:15 result.tar.gz
15:15:17 (2819893): run_atlas exited; CPU time 39614.603830
15:15:17 (2819893): called boinc_finish(0)

</stderr_txt>
]]>

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