Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:31:48 (1894975): wrapper (7.7.26015): starting
20:31:48 (1894975): wrapper: running run_atlas (--nthreads 3)
[2026-01-08 20:31:48] Arguments: --nthreads 3
[2026-01-08 20:31:48] Threads: 3
[2026-01-08 20:31:48] Checking for CVMFS
[2026-01-08 20:31:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 20:31:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 20:31:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 20:31:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 20:31:48] 2.9.2.0 1566360 1339 72484 154918 0 57 22674635 36864000 0 130560 0 858645 99.986 55095 22046 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 20:31:48] CVMFS is ok
[2026-01-08 20:31:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 20:31:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 20:31:48] Further information can be found at the LHC@home message board.
[2026-01-08 20:31:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 20:31:48] Checking for apptainer binary...
[2026-01-08 20:31:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 20:31:48] Running /usr/bin/apptainer --version
[2026-01-08 20:31:48] apptainer version 1.4.1-1.1
[2026-01-08 20:31:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 20:31:48] magicA161a
[2026-01-08 20:31:48] apptainer works
[2026-01-08 20:31:48] Set ATHENA_PROC_NUMBER=3
[2026-01-08 20:31:48] Set ATHENA_CORE_NUMBER=3
[2026-01-08 20:31:48] Starting ATLAS job with PandaID=6962917896
[2026-01-08 20:31:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 22:19:07]  *** The last 200 lines of the pilot log: ***
[2026-01-08 22:19:07] 2026-01-08 21:18:17,807 | INFO     | will attempt to kill all subprocesses of pid=1905152
[2026-01-08 22:19:07] 2026-01-08 21:18:17,849 | INFO     | process IDs to be killed: [1905152] (in reverse order)
[2026-01-08 22:19:07] 2026-01-08 21:18:17,872 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 22:19:07] 2026-01-08 21:18:17,873 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 22:19:07] 2026-01-08 21:18:17,874 | INFO     | did not find any defunct processes belonging to 1905152
[2026-01-08 22:19:07] 2026-01-08 21:18:17,875 | INFO     | did not find any defunct processes belonging to 1905152
[2026-01-08 22:19:07] 2026-01-08 21:18:17,875 | INFO     | ready for new job
[2026-01-08 22:19:07] 2026-01-08 21:18:17,875 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 22:19:07] 2026-01-08 21:18:17,876 | INFO     | ***************************************
[2026-01-08 22:19:07] 2026-01-08 21:18:17,876 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 22:19:07] 2026-01-08 21:18:17,876 | INFO     | ***************************************
[2026-01-08 22:19:07] 2026-01-08 21:18:17,876 | INFO     | 
[2026-01-08 22:19:07] 2026-01-08 21:18:17,876 | INFO     | architecture information:
[2026-01-08 22:19:07] 2026-01-08 21:18:17,877 | INFO     | executing command: cat /etc/os-release
[2026-01-08 22:19:07] 2026-01-08 21:18:17,884 | INFO     | cat /etc/os-release:
[2026-01-08 22:19:07] NAME="CentOS Linux"
[2026-01-08 22:19:07] VERSION="7 (Core)"
[2026-01-08 22:19:07] ID="centos"
[2026-01-08 22:19:07] ID_LIKE="rhel fedora"
[2026-01-08 22:19:07] VERSION_ID="7"
[2026-01-08 22:19:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 22:19:07] ANSI_COLOR="0;31"
[2026-01-08 22:19:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 22:19:07] HOME_URL="https://www.centos.org/"
[2026-01-08 22:19:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 22:19:07] 
[2026-01-08 22:19:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 22:19:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 22:19:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 22:19:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 22:19:07] 
[2026-01-08 22:19:07] 2026-01-08 21:18:17,885 | INFO     | ***************************************
[2026-01-08 22:19:07] 2026-01-08 21:18:18,388 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-08 22:19:07] 2026-01-08 21:18:18,400 | INFO     | sufficient remaining disk space (381894524928 B)
[2026-01-08 22:19:07] 2026-01-08 21:18:18,400 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 22:19:07] 2026-01-08 21:18:18,400 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 22:19:07] 2026-01-08 21:18:18,400 | INFO     | update_server=False
[2026-01-08 22:19:07] 2026-01-08 21:18:18,400 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 22:19:07] 2026-01-08 21:18:18,400 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 22:19:07] 2026-01-08 21:18:18,400 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 22:19:07] 2026-01-08 21:18:18,400 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 22:19:07] 2026-01-08 21:18:18,413 | INFO     | all payload control threads have been joined
[2026-01-08 22:19:07] 2026-01-08 21:18:18,419 | INFO     | all data control threads have been joined
[2026-01-08 22:19:07] 2026-01-08 21:18:18,973 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 22:19:07] 2026-01-08 21:18:18,973 | INFO     | aborting loop
[2026-01-08 22:19:07] 2026-01-08 21:18:19,406 | INFO     | [job] queue monitor thread has finished
[2026-01-08 22:19:07] 2026-01-08 21:18:19,406 | INFO     | [job] retrieve thread has finished
[2026-01-08 22:19:07] 2026-01-08 21:18:19,419 | INFO     | [payload] control thread has finished
[2026-01-08 22:19:07] 2026-01-08 21:18:19,425 | INFO     | [data] control thread has finished
[2026-01-08 22:19:07] 2026-01-08 21:18:19,484 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 22:19:07] 2026-01-08 21:18:19,518 | INFO     | all job control threads have been joined
[2026-01-08 22:19:07] 2026-01-08 21:18:19,918 | INFO     | [payload] validate_post thread has finished
[2026-01-08 22:19:07] 2026-01-08 21:18:19,979 | INFO     | [job] job monitor thread has finished
[2026-01-08 22:19:07] 2026-01-08 21:18:20,287 | INFO     | [data] copytool_in thread has finished
[2026-01-08 22:19:07] 2026-01-08 21:18:20,407 | INFO     | [data] copytool_out thread has finished
[2026-01-08 22:19:07] 2026-01-08 21:18:20,524 | INFO     | [job] control thread has finished
[2026-01-08 22:19:07] 2026-01-08 21:18:20,696 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 22:19:07] 2026-01-08 21:18:20,814 | INFO     | [job] validate thread has finished
[2026-01-08 22:19:07] 2026-01-08 21:18:20,870 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 22:19:07] 2026-01-08 21:18:20,941 | INFO     | [payload] failed_post thread has finished
[2026-01-08 22:19:07] 2026-01-08 21:18:22,408 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 22:19:07] 2026-01-08 21:18:28,953 | INFO     | job.realtimelogging is not enabled
[2026-01-08 22:19:07] 2026-01-08 21:18:29,958 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 22:19:07] 2026-01-08 21:18:48,484 | INFO     | PID=1898699 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 22:19:07] 2026-01-08 21:18:48,484 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 22:19:07] 2026-01-08 21:18:48,484 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 22:19:07] 2026-01-08 21:18:48,484 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 22:19:07] 2026-01-08 21:19:01,614 | INFO     | [monitor] cgroup control has ended
[2026-01-08 22:19:07] 2026-01-08 21:19:02,620 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140709346961216)>', '<ExcThread(monitor, started 140708539254528)>']
[2026-01-08 22:19:07] 2026-01-08 21:19:03,561 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 22:19:07] 2026-01-08 21:19:03,561 | INFO     | [monitor] control thread has ended
[2026-01-08 22:19:07] 2026-01-08 21:19:07,646 | INFO     | all workflow threads have been joined
[2026-01-08 22:19:07] 2026-01-08 21:19:07,646 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 22:19:07] 2026-01-08 21:19:07,646 | INFO     | traces error code: 0
[2026-01-08 22:19:07] 2026-01-08 21:19:07,646 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 22:19:07] 2026-01-08 21:19:07,695 [wrapper] ==== pilot stdout END ====
[2026-01-08 22:19:07] 2026-01-08 21:19:07,697 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 22:19:07] 2026-01-08 21:19:07,700 [wrapper] pilotpid: 1898699
[2026-01-08 22:19:07] 2026-01-08 21:19:07,702 [wrapper] Pilot exit status: 0
[2026-01-08 22:19:07] 2026-01-08 21:19:07,709 [wrapper] pandaids: 6962917896
[2026-01-08 22:19:07] 2026-01-08 21:19:07,725 [wrapper] cleanup supervisor_pilot 1919698 1898700
[2026-01-08 22:19:07] 2026-01-08 21:19:07,728 [wrapper] Test setup, not cleaning
[2026-01-08 22:19:07] 2026-01-08 21:19:07,730 [wrapper] apfmon messages muted
[2026-01-08 22:19:07] 2026-01-08 21:19:07,732 [wrapper] ==== wrapper stdout END ====
[2026-01-08 22:19:07] 2026-01-08 21:19:07,734 [wrapper] ==== wrapper stderr END ====
[2026-01-08 22:19:07]  *** Error codes and diagnostics ***
[2026-01-08 22:19:07]     "exeErrorCode": 0,
[2026-01-08 22:19:07]     "exeErrorDiag": "",
[2026-01-08 22:19:07]     "pilotErrorCode": 0,
[2026-01-08 22:19:07]     "pilotErrorDiag": "",
[2026-01-08 22:19:07]  *** Listing of results directory ***
[2026-01-08 22:19:07] total 433904
[2026-01-08 22:19:07] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-08 22:19:07] -rwx------ 1 boinc boinc     36322 Jan  8 09:04 runpilot2-wrapper.sh
[2026-01-08 22:19:07] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:07 queuedata.json
[2026-01-08 22:19:07] -rw-r--r-- 1 boinc boinc       100 Jan  8 20:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 22:19:07] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 20:31 run_atlas
[2026-01-08 22:19:07] -rw-r--r-- 1 boinc boinc       105 Jan  8 20:31 job.xml
[2026-01-08 22:19:07] -rw-r--r-- 2 boinc boinc 226878077 Jan  8 20:31 EVNT.47898824._000662.pool.root.1
[2026-01-08 22:19:07] drwxrwx--x 2 boinc boinc      4096 Jan  8 20:31 shared
[2026-01-08 22:19:07] -rw-r--r-- 2 boinc boinc    592397 Jan  8 20:31 input.tar.gz
[2026-01-08 22:19:07] -rw-r--r-- 2 boinc boinc     15847 Jan  8 20:31 start_atlas.sh
[2026-01-08 22:19:07] -rw-r--r-- 1 boinc boinc         0 Jan  8 20:31 boinc_setup_complete
[2026-01-08 22:19:07] -rw-r--r-- 1 boinc boinc      6448 Jan  8 20:31 init_data.xml
[2026-01-08 22:19:07] -rw-r--r-- 1 boinc boinc         0 Jan  8 20:31 boinc_lockfile
[2026-01-08 22:19:07] -rw-r--r-- 1 boinc boinc      2518 Jan  8 20:31 pandaJob.out
[2026-01-08 22:19:07] -rw------- 1 boinc boinc    989845 Jan  8 20:31 agis_schedconf.cvmfs.json
[2026-01-08 22:19:07] -rw------- 1 boinc boinc   1516240 Jan  8 20:31 agis_ddmendpoints.agis.ALL.json
[2026-01-08 22:19:07] drwx------ 5 boinc boinc      4096 Jan  8 20:31 pilot3
[2026-01-08 22:19:07] -rw------- 1 boinc boinc 211160998 Jan  8 22:17 HITS.47898826._019976.pool.root.1
[2026-01-08 22:19:07] -rw-r--r-- 1 boinc boinc       529 Jan  8 22:17 boinc_task_state.xml
[2026-01-08 22:19:07] -rw------- 1 boinc boinc      1015 Jan  8 22:18 memory_monitor_summary.json
[2026-01-08 22:19:07] -rw------- 1 boinc boinc    262073 Jan  8 22:18 log.47898826._019976.job.log.tgz.1
[2026-01-08 22:19:07] -rw------- 1 boinc boinc      7753 Jan  8 22:18 heartbeat.json
[2026-01-08 22:19:07] -rw------- 1 boinc boinc        95 Jan  8 22:18 pilot_heartbeat.json
[2026-01-08 22:19:07] -rw-r--r-- 1 boinc boinc      8192 Jan  8 22:18 boinc_mmap_file
[2026-01-08 22:19:07] -rw-r--r-- 1 boinc boinc        27 Jan  8 22:18 wrapper_checkpoint.txt
[2026-01-08 22:19:07] -rw------- 1 boinc boinc      4824 Jan  8 22:19 pilotlog.txt
[2026-01-08 22:19:07] -rw------- 1 boinc boinc    925872 Jan  8 22:19 log.47898826._019976.job.log.1
[2026-01-08 22:19:07] -rw------- 1 boinc boinc       357 Jan  8 22:19 output.list
[2026-01-08 22:19:07] -rw-r--r-- 1 boinc boinc       620 Jan  8 22:19 runtime_log
[2026-01-08 22:19:07] -rw------- 1 boinc boinc   1208320 Jan  8 22:19 result.tar.gz
[2026-01-08 22:19:07] -rw------- 1 boinc boinc       663 Jan  8 22:19 xZLODmBB0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEVeKDmv4eGjn.diag
[2026-01-08 22:19:07] -rw-r--r-- 1 boinc boinc      8917 Jan  8 22:19 runtime_log.err
[2026-01-08 22:19:07] -rw-r--r-- 1 boinc boinc     10293 Jan  8 22:19 stderr.txt
[2026-01-08 22:19:07] HITS file was successfully produced:
[2026-01-08 22:19:07] -rw------- 1 boinc boinc 211160998 Jan  8 22:17 shared/HITS.pool.root.1
[2026-01-08 22:19:07]  *** Contents of shared directory: ***
[2026-01-08 22:19:07] total 429560
[2026-01-08 22:19:07] -rw-r--r-- 2 boinc boinc 226878077 Jan  8 20:31 ATLAS.root_0
[2026-01-08 22:19:07] -rw-r--r-- 2 boinc boinc    592397 Jan  8 20:31 input.tar.gz
[2026-01-08 22:19:07] -rw-r--r-- 2 boinc boinc     15847 Jan  8 20:31 start_atlas.sh
[2026-01-08 22:19:07] -rw------- 1 boinc boinc 211160998 Jan  8 22:17 HITS.pool.root.1
[2026-01-08 22:19:07] -rw------- 1 boinc boinc   1208320 Jan  8 22:19 result.tar.gz
22:19:08 (1894975): run_atlas exited; CPU time 18455.551426
22:19:08 (1894975): called boinc_finish(0)

</stderr_txt>
]]>

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