Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:19:11 (1922236): wrapper (7.7.26015): starting
22:19:11 (1922236): wrapper: running run_atlas (--nthreads 3)
[2026-01-08 22:19:11] Arguments: --nthreads 3
[2026-01-08 22:19:11] Threads: 3
[2026-01-08 22:19:11] Checking for CVMFS
[2026-01-08 22:19:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 22:19:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 22:19:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 22:19:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 22:19:11] 2.9.2.0 1566360 1446 73468 154920 0 56 22684616 36864000 0 130560 0 930140 99.987 57853 19908 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 22:19:11] CVMFS is ok
[2026-01-08 22:19:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 22:19:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 22:19:11] Further information can be found at the LHC@home message board.
[2026-01-08 22:19:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 22:19:11] Checking for apptainer binary...
[2026-01-08 22:19:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 22:19:11] Running /usr/bin/apptainer --version
[2026-01-08 22:19:11] apptainer version 1.4.1-1.1
[2026-01-08 22:19:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 22:19:11] magicA161a
[2026-01-08 22:19:11] apptainer works
[2026-01-08 22:19:11] Set ATHENA_PROC_NUMBER=3
[2026-01-08 22:19:11] Set ATHENA_CORE_NUMBER=3
[2026-01-08 22:19:11] Starting ATLAS job with PandaID=6962915805
[2026-01-08 22:19:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 00:09:31]  *** The last 200 lines of the pilot log: ***
[2026-01-09 00:09:31] 2026-01-08 23:08:41,578 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 00:09:31] 2026-01-08 23:08:41,578 | INFO     | collected zombie processes
[2026-01-09 00:09:31] 2026-01-08 23:08:41,578 | INFO     | will attempt to kill all subprocesses of pid=1932400
[2026-01-09 00:09:31] 2026-01-08 23:08:41,621 | INFO     | process IDs to be killed: [1932400] (in reverse order)
[2026-01-09 00:09:31] 2026-01-08 23:08:41,645 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 00:09:31] 2026-01-08 23:08:41,645 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 00:09:31] 2026-01-08 23:08:41,646 | INFO     | did not find any defunct processes belonging to 1932400
[2026-01-09 00:09:31] 2026-01-08 23:08:41,647 | INFO     | did not find any defunct processes belonging to 1932400
[2026-01-09 00:09:31] 2026-01-08 23:08:41,647 | INFO     | ready for new job
[2026-01-09 00:09:31] 2026-01-08 23:08:41,647 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 00:09:31] 2026-01-08 23:08:41,648 | INFO     | ***************************************
[2026-01-09 00:09:31] 2026-01-08 23:08:41,648 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 00:09:31] 2026-01-08 23:08:41,648 | INFO     | ***************************************
[2026-01-09 00:09:31] 2026-01-08 23:08:41,648 | INFO     | 
[2026-01-09 00:09:31] 2026-01-08 23:08:41,648 | INFO     | architecture information:
[2026-01-09 00:09:31] 2026-01-08 23:08:41,649 | INFO     | executing command: cat /etc/os-release
[2026-01-09 00:09:31] 2026-01-08 23:08:41,657 | INFO     | cat /etc/os-release:
[2026-01-09 00:09:31] NAME="CentOS Linux"
[2026-01-09 00:09:31] VERSION="7 (Core)"
[2026-01-09 00:09:31] ID="centos"
[2026-01-09 00:09:31] ID_LIKE="rhel fedora"
[2026-01-09 00:09:31] VERSION_ID="7"
[2026-01-09 00:09:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 00:09:31] ANSI_COLOR="0;31"
[2026-01-09 00:09:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 00:09:31] HOME_URL="https://www.centos.org/"
[2026-01-09 00:09:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 00:09:31] 
[2026-01-09 00:09:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 00:09:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 00:09:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 00:09:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 00:09:31] 
[2026-01-09 00:09:31] 2026-01-08 23:08:41,657 | INFO     | ***************************************
[2026-01-09 00:09:31] 2026-01-08 23:08:42,160 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 00:09:31] 2026-01-08 23:08:42,172 | INFO     | sufficient remaining disk space (382100045824 B)
[2026-01-09 00:09:31] 2026-01-08 23:08:42,172 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 00:09:31] 2026-01-08 23:08:42,172 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 00:09:31] 2026-01-08 23:08:42,172 | INFO     | update_server=False
[2026-01-09 00:09:31] 2026-01-08 23:08:42,172 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 00:09:31] 2026-01-08 23:08:42,172 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 00:09:31] 2026-01-08 23:08:42,201 | INFO     | all job control threads have been joined
[2026-01-09 00:09:31] 2026-01-08 23:08:42,546 | INFO     | all payload control threads have been joined
[2026-01-09 00:09:31] 2026-01-08 23:08:42,622 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 00:09:31] 2026-01-08 23:08:42,622 | INFO     | aborting loop
[2026-01-09 00:09:31] 2026-01-08 23:08:43,006 | INFO     | all data control threads have been joined
[2026-01-09 00:09:31] 2026-01-08 23:08:43,178 | INFO     | [job] retrieve thread has finished
[2026-01-09 00:09:31] 2026-01-08 23:08:43,207 | INFO     | [job] control thread has finished
[2026-01-09 00:09:31] 2026-01-08 23:08:43,242 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 00:09:31] 2026-01-08 23:08:43,552 | INFO     | [payload] control thread has finished
[2026-01-09 00:09:31] 2026-01-08 23:08:43,571 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 00:09:31] 2026-01-08 23:08:43,578 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 00:09:31] 2026-01-08 23:08:43,628 | INFO     | [job] job monitor thread has finished
[2026-01-09 00:09:31] 2026-01-08 23:08:43,924 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 00:09:31] 2026-01-08 23:08:43,946 | INFO     | [payload] failed_post thread has finished
[2026-01-09 00:09:31] 2026-01-08 23:08:44,012 | INFO     | [data] control thread has finished
[2026-01-09 00:09:31] 2026-01-08 23:08:44,100 | INFO     | [data] copytool_in thread has finished
[2026-01-09 00:09:31] 2026-01-08 23:08:44,500 | INFO     | [payload] validate_post thread has finished
[2026-01-09 00:09:31] 2026-01-08 23:08:44,627 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 00:09:31] 2026-01-08 23:08:44,628 | INFO     | [job] validate thread has finished
[2026-01-09 00:09:31] 2026-01-08 23:08:45,166 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 00:09:31] 2026-01-08 23:08:45,584 | INFO     | [data] copytool_out thread has finished
[2026-01-09 00:09:31] 2026-01-08 23:08:46,171 | INFO     | [job] queue monitor thread has finished
[2026-01-09 00:09:31] 2026-01-08 23:08:46,179 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 00:09:31] 2026-01-08 23:09:12,555 | INFO     | PID=1925956 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 00:09:31] 2026-01-08 23:09:12,555 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 00:09:31] 2026-01-08 23:09:12,555 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 00:09:31] 2026-01-08 23:09:12,555 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 00:09:31] 2026-01-08 23:09:25,196 | INFO     | [monitor] cgroup control has ended
[2026-01-09 00:09:31] 2026-01-08 23:09:26,777 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139974009460544)>', '<ExcThread(monitor, started 139973378434816)>']
[2026-01-09 00:09:31] 2026-01-08 23:09:27,630 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 00:09:31] 2026-01-08 23:09:27,630 | INFO     | [monitor] control thread has ended
[2026-01-09 00:09:31] 2026-01-08 23:09:31,793 | INFO     | all workflow threads have been joined
[2026-01-09 00:09:31] 2026-01-08 23:09:31,793 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 00:09:31] 2026-01-08 23:09:31,793 | INFO     | traces error code: 0
[2026-01-09 00:09:31] 2026-01-08 23:09:31,793 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 00:09:31] 2026-01-08 23:09:31,843 [wrapper] ==== pilot stdout END ====
[2026-01-09 00:09:31] 2026-01-08 23:09:31,845 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 00:09:31] 2026-01-08 23:09:31,847 [wrapper] pilotpid: 1925956
[2026-01-09 00:09:31] 2026-01-08 23:09:31,850 [wrapper] Pilot exit status: 0
[2026-01-09 00:09:31] 2026-01-08 23:09:31,857 [wrapper] pandaids: 6962915805
[2026-01-09 00:09:31] 2026-01-08 23:09:31,873 [wrapper] cleanup supervisor_pilot 1947163 1925957
[2026-01-09 00:09:31] 2026-01-08 23:09:31,875 [wrapper] Test setup, not cleaning
[2026-01-09 00:09:31] 2026-01-08 23:09:31,877 [wrapper] apfmon messages muted
[2026-01-09 00:09:31] 2026-01-08 23:09:31,880 [wrapper] ==== wrapper stdout END ====
[2026-01-09 00:09:31] 2026-01-08 23:09:31,882 [wrapper] ==== wrapper stderr END ====
[2026-01-09 00:09:31]  *** Error codes and diagnostics ***
[2026-01-09 00:09:31]     "exeErrorCode": 0,
[2026-01-09 00:09:31]     "exeErrorDiag": "",
[2026-01-09 00:09:31]     "pilotErrorCode": 0,
[2026-01-09 00:09:31]     "pilotErrorDiag": "",
[2026-01-09 00:09:31]  *** Listing of results directory ***
[2026-01-09 00:09:31] total 444080
[2026-01-09 00:09:31] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-09 00:09:31] -rwx------ 1 boinc boinc     36322 Jan  8 09:02 runpilot2-wrapper.sh
[2026-01-09 00:09:31] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:04 queuedata.json
[2026-01-09 00:09:31] -rw-r--r-- 1 boinc boinc       100 Jan  8 22:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 00:09:31] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 22:19 run_atlas
[2026-01-09 00:09:31] -rw-r--r-- 1 boinc boinc       105 Jan  8 22:19 job.xml
[2026-01-09 00:09:31] -rw-r--r-- 2 boinc boinc 227021340 Jan  8 22:19 EVNT.47898824._000433.pool.root.1
[2026-01-09 00:09:31] -rw-r--r-- 2 boinc boinc    592403 Jan  8 22:19 input.tar.gz
[2026-01-09 00:09:31] -rw-r--r-- 2 boinc boinc     15847 Jan  8 22:19 start_atlas.sh
[2026-01-09 00:09:31] drwxrwx--x 2 boinc boinc      4096 Jan  8 22:19 shared
[2026-01-09 00:09:31] -rw-r--r-- 1 boinc boinc         0 Jan  8 22:19 boinc_setup_complete
[2026-01-09 00:09:31] -rw-r--r-- 1 boinc boinc      6448 Jan  8 22:19 init_data.xml
[2026-01-09 00:09:31] -rw-r--r-- 1 boinc boinc         0 Jan  8 22:19 boinc_lockfile
[2026-01-09 00:09:31] -rw-r--r-- 1 boinc boinc      2518 Jan  8 22:19 pandaJob.out
[2026-01-09 00:09:31] -rw------- 1 boinc boinc    989845 Jan  8 22:19 agis_schedconf.cvmfs.json
[2026-01-09 00:09:31] -rw------- 1 boinc boinc   1516240 Jan  8 22:19 agis_ddmendpoints.agis.ALL.json
[2026-01-09 00:09:31] drwx------ 5 boinc boinc      4096 Jan  8 22:19 pilot3
[2026-01-09 00:09:31] -rw-r--r-- 1 boinc boinc       529 Jan  9 00:08 boinc_task_state.xml
[2026-01-09 00:09:31] -rw------- 1 boinc boinc 221336248 Jan  9 00:08 HITS.47898826._018393.pool.root.1
[2026-01-09 00:09:31] -rw------- 1 boinc boinc      1012 Jan  9 00:08 memory_monitor_summary.json
[2026-01-09 00:09:31] -rw------- 1 boinc boinc    285481 Jan  9 00:08 log.47898826._018393.job.log.tgz.1
[2026-01-09 00:09:31] -rw------- 1 boinc boinc      7751 Jan  9 00:08 heartbeat.json
[2026-01-09 00:09:31] -rw-r--r-- 1 boinc boinc      8192 Jan  9 00:09 boinc_mmap_file
[2026-01-09 00:09:31] -rw-r--r-- 1 boinc boinc        27 Jan  9 00:09 wrapper_checkpoint.txt
[2026-01-09 00:09:31] -rw------- 1 boinc boinc        95 Jan  9 00:09 pilot_heartbeat.json
[2026-01-09 00:09:31] -rw------- 1 boinc boinc      4752 Jan  9 00:09 pilotlog.txt
[2026-01-09 00:09:31] -rw------- 1 boinc boinc    950423 Jan  9 00:09 log.47898826._018393.job.log.1
[2026-01-09 00:09:31] -rw------- 1 boinc boinc       357 Jan  9 00:09 output.list
[2026-01-09 00:09:31] -rw-r--r-- 1 boinc boinc       620 Jan  9 00:09 runtime_log
[2026-01-09 00:09:31] -rw------- 1 boinc boinc   1259520 Jan  9 00:09 result.tar.gz
[2026-01-09 00:09:31] -rw-r--r-- 1 boinc boinc      8917 Jan  9 00:09 runtime_log.err
[2026-01-09 00:09:31] -rw------- 1 boinc boinc       663 Jan  9 00:09 grtMDmE9zx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNNeKDmfPBHam.diag
[2026-01-09 00:09:31] -rw-r--r-- 1 boinc boinc     10418 Jan  9 00:09 stderr.txt
[2026-01-09 00:09:31] HITS file was successfully produced:
[2026-01-09 00:09:31] -rw------- 1 boinc boinc 221336248 Jan  9 00:08 shared/HITS.pool.root.1
[2026-01-09 00:09:31]  *** Contents of shared directory: ***
[2026-01-09 00:09:31] total 439688
[2026-01-09 00:09:31] -rw-r--r-- 2 boinc boinc 227021340 Jan  8 22:19 ATLAS.root_0
[2026-01-09 00:09:31] -rw-r--r-- 2 boinc boinc    592403 Jan  8 22:19 input.tar.gz
[2026-01-09 00:09:31] -rw-r--r-- 2 boinc boinc     15847 Jan  8 22:19 start_atlas.sh
[2026-01-09 00:09:31] -rw------- 1 boinc boinc 221336248 Jan  9 00:08 HITS.pool.root.1
[2026-01-09 00:09:31] -rw------- 1 boinc boinc   1259520 Jan  9 00:09 result.tar.gz
00:09:33 (1922236): run_atlas exited; CPU time 19033.230568
00:09:33 (1922236): called boinc_finish(0)

</stderr_txt>
]]>

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