Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:27:51 (3517716): wrapper (7.7.26015): starting
21:27:51 (3517716): wrapper: running run_atlas (--nthreads 2)
[2026-01-08 21:27:51] Arguments: --nthreads 2
[2026-01-08 21:27:51] Threads: 2
[2026-01-08 21:27:51] Checking for CVMFS
[2026-01-08 21:27:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 21:27:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 21:27:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 21:27:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 21:27:51] 2.9.2.0 3263997 1399 56252 154919 3 57 18678200 36864001 0 130560 0 663656 99.983 57573 22702 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-08 21:27:51] CVMFS is ok
[2026-01-08 21:27:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 21:27:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 21:27:51] Further information can be found at the LHC@home message board.
[2026-01-08 21:27:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 21:27:51] Checking for apptainer binary...
[2026-01-08 21:27:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 21:27:51] Running /usr/bin/apptainer --version
[2026-01-08 21:27:51] apptainer version 1.4.1-1.1
[2026-01-08 21:27:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 21:27:51] magicA252b
[2026-01-08 21:27:51] apptainer works
[2026-01-08 21:27:51] Set ATHENA_PROC_NUMBER=2
[2026-01-08 21:27:51] Set ATHENA_CORE_NUMBER=2
[2026-01-08 21:27:51] Starting ATLAS job with PandaID=6962915863
[2026-01-08 21:27:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 00:18:23]  *** The last 200 lines of the pilot log: ***
[2026-01-09 00:18:23] 2026-01-08 23:17:38,343 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 00:18:23] 2026-01-08 23:17:38,343 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 00:18:23] 2026-01-08 23:17:38,343 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 00:18:23] 2026-01-08 23:17:38,343 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 00:18:23] 2026-01-08 23:17:38,343 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 00:18:23] 2026-01-08 23:17:38,343 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 00:18:23] 2026-01-08 23:17:38,344 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 00:18:23] 2026-01-08 23:17:38,344 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 00:18:23] 2026-01-08 23:17:38,344 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 00:18:23] 2026-01-08 23:17:38,344 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 00:18:23] 2026-01-08 23:17:38,344 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 00:18:23] 2026-01-08 23:17:38,344 | INFO     | job 6962915863 has completed (purged errors)
[2026-01-09 00:18:23] 2026-01-08 23:17:38,344 | INFO     | overall cleanup function is called
[2026-01-09 00:18:23] 2026-01-08 23:17:39,350 | INFO     | --- collectZombieJob: --- 10, [3527847]
[2026-01-09 00:18:23] 2026-01-08 23:17:39,350 | INFO     | zombie collector waiting for pid 3527847
[2026-01-09 00:18:23] 2026-01-08 23:17:39,350 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 00:18:23] 2026-01-08 23:17:39,351 | INFO     | collected zombie processes
[2026-01-09 00:18:23] 2026-01-08 23:17:39,351 | INFO     | will attempt to kill all subprocesses of pid=3527847
[2026-01-09 00:18:23] 2026-01-08 23:17:39,384 | INFO     | process IDs to be killed: [3527847] (in reverse order)
[2026-01-09 00:18:23] 2026-01-08 23:17:39,403 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 00:18:23] 2026-01-08 23:17:39,403 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 00:18:23] 2026-01-08 23:17:39,404 | INFO     | did not find any defunct processes belonging to 3527847
[2026-01-09 00:18:23] 2026-01-08 23:17:39,405 | INFO     | did not find any defunct processes belonging to 3527847
[2026-01-09 00:18:23] 2026-01-08 23:17:39,405 | INFO     | ready for new job
[2026-01-09 00:18:23] 2026-01-08 23:17:39,405 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 00:18:23] 2026-01-08 23:17:39,405 | INFO     | ***************************************
[2026-01-09 00:18:23] 2026-01-08 23:17:39,405 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 00:18:23] 2026-01-08 23:17:39,405 | INFO     | ***************************************
[2026-01-09 00:18:23] 2026-01-08 23:17:39,405 | INFO     | 
[2026-01-09 00:18:23] 2026-01-08 23:17:39,406 | INFO     | architecture information:
[2026-01-09 00:18:23] 2026-01-08 23:17:39,406 | INFO     | executing command: cat /etc/os-release
[2026-01-09 00:18:23] 2026-01-08 23:17:39,413 | INFO     | cat /etc/os-release:
[2026-01-09 00:18:23] NAME="CentOS Linux"
[2026-01-09 00:18:23] VERSION="7 (Core)"
[2026-01-09 00:18:23] ID="centos"
[2026-01-09 00:18:23] ID_LIKE="rhel fedora"
[2026-01-09 00:18:23] VERSION_ID="7"
[2026-01-09 00:18:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 00:18:23] ANSI_COLOR="0;31"
[2026-01-09 00:18:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 00:18:23] HOME_URL="https://www.centos.org/"
[2026-01-09 00:18:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 00:18:23] 
[2026-01-09 00:18:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 00:18:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 00:18:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 00:18:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 00:18:23] 
[2026-01-09 00:18:23] 2026-01-08 23:17:39,414 | INFO     | ***************************************
[2026-01-09 00:18:23] 2026-01-08 23:17:39,917 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 00:18:23] 2026-01-08 23:17:39,928 | INFO     | sufficient remaining disk space (342430318592 B)
[2026-01-09 00:18:23] 2026-01-08 23:17:39,928 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 00:18:23] 2026-01-08 23:17:39,928 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 00:18:23] 2026-01-08 23:17:39,928 | INFO     | update_server=False
[2026-01-09 00:18:23] 2026-01-08 23:17:39,928 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 00:18:23] 2026-01-08 23:17:39,928 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 00:18:23] 2026-01-08 23:17:39,928 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 00:18:23] 2026-01-08 23:17:39,955 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 00:18:23] 2026-01-08 23:17:39,955 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 00:18:23] 2026-01-08 23:17:39,955 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 00:18:23] 2026-01-08 23:17:39,955 | INFO     | will abort loop
[2026-01-09 00:18:23] 2026-01-08 23:17:39,993 | INFO     | all data control threads have been joined
[2026-01-09 00:18:23] 2026-01-08 23:17:40,223 | INFO     | all payload control threads have been joined
[2026-01-09 00:18:23] 2026-01-08 23:17:40,798 | INFO     | all job control threads have been joined
[2026-01-09 00:18:23] 2026-01-08 23:17:40,933 | INFO     | [job] queue monitor thread has finished
[2026-01-09 00:18:23] 2026-01-08 23:17:40,934 | INFO     | [job] retrieve thread has finished
[2026-01-09 00:18:23] 2026-01-08 23:17:40,960 | INFO     | [job] job monitor thread has finished
[2026-01-09 00:18:23] 2026-01-08 23:17:40,962 | INFO     | [data] copytool_in thread has finished
[2026-01-09 00:18:23] 2026-01-08 23:17:40,999 | INFO     | [data] control thread has finished
[2026-01-09 00:18:23] 2026-01-08 23:17:41,127 | INFO     | [payload] validate_post thread has finished
[2026-01-09 00:18:23] 2026-01-08 23:17:41,229 | INFO     | [payload] control thread has finished
[2026-01-09 00:18:23] 2026-01-08 23:17:41,700 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 00:18:23] 2026-01-08 23:17:41,783 | INFO     | [payload] failed_post thread has finished
[2026-01-09 00:18:23] 2026-01-08 23:17:41,805 | INFO     | [job] control thread has finished
[2026-01-09 00:18:23] 2026-01-08 23:17:41,934 | INFO     | [data] copytool_out thread has finished
[2026-01-09 00:18:23] 2026-01-08 23:17:42,117 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 00:18:23] 2026-01-08 23:17:42,158 | INFO     | [job] validate thread has finished
[2026-01-09 00:18:23] 2026-01-08 23:17:42,343 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 00:18:23] 2026-01-08 23:17:43,219 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 00:18:23] 2026-01-08 23:17:47,226 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 00:18:23] 2026-01-08 23:17:50,636 | INFO     | job.realtimelogging is not enabled
[2026-01-09 00:18:23] 2026-01-08 23:17:51,642 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 00:18:23] 2026-01-08 23:18:10,214 | INFO     | PID=3521421 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 00:18:23] 2026-01-08 23:18:10,214 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 00:18:23] 2026-01-08 23:18:10,214 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 00:18:23] 2026-01-08 23:18:10,214 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 00:18:23] 2026-01-08 23:18:17,804 | INFO     | [monitor] cgroup control has ended
[2026-01-09 00:18:23] 2026-01-08 23:18:18,383 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140539599927104)>', '<ExcThread(monitor, started 140538971940608)>']
[2026-01-09 00:18:23] 2026-01-08 23:18:19,257 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 00:18:23] 2026-01-08 23:18:19,258 | INFO     | [monitor] control thread has ended
[2026-01-09 00:18:23] 2026-01-08 23:18:23,385 | INFO     | all workflow threads have been joined
[2026-01-09 00:18:23] 2026-01-08 23:18:23,386 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 00:18:23] 2026-01-08 23:18:23,386 | INFO     | traces error code: 0
[2026-01-09 00:18:23] 2026-01-08 23:18:23,387 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 00:18:23] 2026-01-08 23:18:23,429 [wrapper] ==== pilot stdout END ====
[2026-01-09 00:18:23] 2026-01-08 23:18:23,431 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 00:18:23] 2026-01-08 23:18:23,434 [wrapper] pilotpid: 3521421
[2026-01-09 00:18:23] 2026-01-08 23:18:23,436 [wrapper] Pilot exit status: 0
[2026-01-09 00:18:23] 2026-01-08 23:18:23,441 [wrapper] pandaids: 6962915863
[2026-01-09 00:18:23] 2026-01-08 23:18:23,454 [wrapper] cleanup supervisor_pilot 3547119 3521422
[2026-01-09 00:18:23] 2026-01-08 23:18:23,456 [wrapper] Test setup, not cleaning
[2026-01-09 00:18:23] 2026-01-08 23:18:23,458 [wrapper] apfmon messages muted
[2026-01-09 00:18:23] 2026-01-08 23:18:23,460 [wrapper] ==== wrapper stdout END ====
[2026-01-09 00:18:23] 2026-01-08 23:18:23,461 [wrapper] ==== wrapper stderr END ====
[2026-01-09 00:18:23]  *** Error codes and diagnostics ***
[2026-01-09 00:18:23]     "exeErrorCode": 0,
[2026-01-09 00:18:23]     "exeErrorDiag": "",
[2026-01-09 00:18:23]     "pilotErrorCode": 0,
[2026-01-09 00:18:23]     "pilotErrorDiag": "",
[2026-01-09 00:18:23]  *** Listing of results directory ***
[2026-01-09 00:18:23] total 445160
[2026-01-09 00:18:23] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-09 00:18:23] -rw-r--r-- 1 boinc boinc      5112 Jan  8 08:58 queuedata.json
[2026-01-09 00:18:23] -rwx------ 1 boinc boinc     36322 Jan  8 08:58 runpilot2-wrapper.sh
[2026-01-09 00:18:23] -rw-r--r-- 1 boinc boinc       100 Jan  8 21:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 00:18:23] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 21:27 run_atlas
[2026-01-09 00:18:23] -rw-r--r-- 1 boinc boinc       105 Jan  8 21:27 job.xml
[2026-01-09 00:18:23] -rw-r--r-- 2 boinc boinc 227218685 Jan  8 21:27 EVNT.47898824._000436.pool.root.1
[2026-01-09 00:18:23] -rw-r--r-- 2 boinc boinc    592388 Jan  8 21:27 input.tar.gz
[2026-01-09 00:18:23] -rw-r--r-- 2 boinc boinc     15847 Jan  8 21:27 start_atlas.sh
[2026-01-09 00:18:23] drwxrwx--x 2 boinc boinc      4096 Jan  8 21:27 shared
[2026-01-09 00:18:23] -rw-r--r-- 1 boinc boinc         0 Jan  8 21:27 boinc_setup_complete
[2026-01-09 00:18:23] -rw-r--r-- 1 boinc boinc      6208 Jan  8 21:27 init_data.xml
[2026-01-09 00:18:23] -rw-r--r-- 1 boinc boinc         0 Jan  8 21:27 boinc_lockfile
[2026-01-09 00:18:23] -rw-r--r-- 1 boinc boinc      2517 Jan  8 21:27 pandaJob.out
[2026-01-09 00:18:23] -rw------- 1 boinc boinc    989845 Jan  8 21:28 agis_schedconf.cvmfs.json
[2026-01-09 00:18:23] -rw------- 1 boinc boinc   1516240 Jan  8 21:28 agis_ddmendpoints.agis.ALL.json
[2026-01-09 00:18:23] drwx------ 5 boinc boinc      4096 Jan  8 21:28 pilot3
[2026-01-09 00:18:23] -rw------- 1 boinc boinc 221235368 Jan  9 00:17 HITS.47898826._018451.pool.root.1
[2026-01-09 00:18:23] -rw-r--r-- 1 boinc boinc       530 Jan  9 00:17 boinc_task_state.xml
[2026-01-09 00:18:23] -rw------- 1 boinc boinc      1021 Jan  9 00:17 memory_monitor_summary.json
[2026-01-09 00:18:23] -rw------- 1 boinc boinc    298010 Jan  9 00:17 log.47898826._018451.job.log.tgz.1
[2026-01-09 00:18:23] -rw------- 1 boinc boinc      7770 Jan  9 00:17 heartbeat.json
[2026-01-09 00:18:23] -rw-r--r-- 1 boinc boinc      8192 Jan  9 00:18 boinc_mmap_file
[2026-01-09 00:18:23] -rw-r--r-- 1 boinc boinc        28 Jan  9 00:18 wrapper_checkpoint.txt
[2026-01-09 00:18:23] -rw------- 1 boinc boinc        95 Jan  9 00:18 pilot_heartbeat.json
[2026-01-09 00:18:23] -rw------- 1 boinc boinc      5010 Jan  9 00:18 pilotlog.txt
[2026-01-09 00:18:23] -rw------- 1 boinc boinc   1448773 Jan  9 00:18 log.47898826._018451.job.log.1
[2026-01-09 00:18:23] -rw------- 1 boinc boinc       357 Jan  9 00:18 output.list
[2026-01-09 00:18:23] -rw-r--r-- 1 boinc boinc       620 Jan  9 00:18 runtime_log
[2026-01-09 00:18:23] -rw------- 1 boinc boinc   1761280 Jan  9 00:18 result.tar.gz
[2026-01-09 00:18:23] -rw-r--r-- 1 boinc boinc      8918 Jan  9 00:18 runtime_log.err
[2026-01-09 00:18:23] -rw------- 1 boinc boinc       665 Jan  9 00:18 UJTKDm95zx8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoJjKDmQGK4Qm.diag
[2026-01-09 00:18:23] -rw-r--r-- 1 boinc boinc     12261 Jan  9 00:18 stderr.txt
[2026-01-09 00:18:23] HITS file was successfully produced:
[2026-01-09 00:18:23] -rw------- 1 boinc boinc 221235368 Jan  9 00:17 shared/HITS.pool.root.1
[2026-01-09 00:18:23]  *** Contents of shared directory: ***
[2026-01-09 00:18:23] total 440272
[2026-01-09 00:18:23] -rw-r--r-- 2 boinc boinc 227218685 Jan  8 21:27 ATLAS.root_0
[2026-01-09 00:18:23] -rw-r--r-- 2 boinc boinc    592388 Jan  8 21:27 input.tar.gz
[2026-01-09 00:18:23] -rw-r--r-- 2 boinc boinc     15847 Jan  8 21:27 start_atlas.sh
[2026-01-09 00:18:23] -rw------- 1 boinc boinc 221235368 Jan  9 00:17 HITS.pool.root.1
[2026-01-09 00:18:23] -rw------- 1 boinc boinc   1761280 Jan  9 00:18 result.tar.gz
00:18:25 (3517716): run_atlas exited; CPU time 19952.163508
00:18:25 (3517716): called boinc_finish(0)

</stderr_txt>
]]>

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